Wall clock time and date at job start Mon Mar 30 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47069 * 2 1 4 4 C 1.50700 * 109.46977 * 119.99524 * 2 1 3 5 5 C 1.38884 * 125.35439 * 299.97530 * 4 2 1 6 6 C 1.40953 * 126.88889 * 0.06199 * 5 4 2 7 7 H 1.07999 * 120.00024 * 359.97438 * 6 5 4 8 8 C 1.39762 * 119.99957 * 179.97438 * 6 5 4 9 9 N 1.31047 * 120.00054 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00055 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46865 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46962 * 120.00050 * 10 8 6 13 13 H 1.48505 * 109.47109 * 240.00098 * 10 8 6 14 14 C 1.47740 * 106.22278 * 180.02562 * 5 4 2 15 15 N 1.32626 * 133.52828 * 180.32207 * 14 5 4 16 16 C 1.31629 * 121.46596 * 180.16325 * 15 14 5 17 17 C 1.38601 * 121.14493 * 359.47628 * 16 15 14 18 18 C 1.38369 * 119.62745 * 0.25896 * 17 16 15 19 19 C 1.39282 * 118.32327 * 359.97438 * 18 17 16 20 20 N 1.35593 * 125.34992 * 120.01621 * 4 2 1 21 21 C 1.46501 * 124.73185 * 359.94647 * 20 4 2 22 22 H 1.09003 * 109.46972 * 300.00169 * 1 2 3 23 23 H 1.08999 * 109.46989 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.47304 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47598 * 239.99803 * 2 1 3 26 26 H 1.08999 * 109.47262 * 299.99890 * 3 2 1 27 27 H 1.08996 * 109.47529 * 59.99755 * 3 2 1 28 28 H 1.09001 * 109.47307 * 180.02562 * 3 2 1 29 29 H 0.97004 * 119.99501 * 180.02562 * 9 8 6 30 30 H 1.08002 * 119.43153 * 179.76099 * 16 15 14 31 31 H 1.08000 * 120.18503 * 180.28492 * 17 16 15 32 32 H 1.07998 * 120.84194 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.46886 * 270.04821 * 21 20 4 34 34 H 1.08998 * 109.46706 * 30.04444 * 21 20 4 35 35 H 1.09001 * 109.47335 * 150.04228 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.7666 -0.3336 2.5406 6 6 0.9900 0.7636 2.9646 7 1 0.5297 1.4135 2.2350 8 6 0.8155 1.0106 4.3291 9 7 1.3735 0.2218 5.2144 10 14 -0.2132 2.4652 4.8909 11 1 -0.7285 3.1947 3.7045 12 1 -1.3540 1.9786 5.7076 13 1 0.6259 3.3789 5.7073 14 6 2.4604 -1.3141 3.4008 15 7 2.5620 -1.4661 4.7144 16 6 3.2628 -2.4484 5.2403 17 6 3.9156 -3.3721 4.4392 18 6 3.8363 -3.2604 3.0623 19 6 3.0938 -2.2111 2.5261 20 7 2.8154 -1.8172 1.2327 21 6 3.2977 -2.5007 0.0300 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.2520 0.3931 6.1614 30 1 3.3265 -2.5390 6.3146 31 1 4.4826 -4.1747 4.8872 32 1 4.3369 -3.9694 2.4196 33 1 2.5780 -3.2632 -0.2679 34 1 3.4153 -1.7771 -0.7766 35 1 4.2588 -2.9704 0.2397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260730773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:05 Heat of formation + Delta-G solvation = 84.713932 kcal Electronic energy + Delta-G solvation = -17965.485019 eV Core-core repulsion = 15350.790101 eV Total energy + Delta-G solvation = -2614.694918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99946 -36.83624 -34.35770 -33.37204 -31.11988 -30.19054 -27.74326 -26.60462 -26.28687 -24.01088 -22.37690 -20.84314 -20.31117 -18.16367 -16.80034 -15.87362 -15.27461 -14.69162 -14.50006 -14.36144 -13.55862 -13.22402 -12.71833 -12.42628 -12.38603 -12.25192 -11.93166 -11.82772 -11.40080 -11.13802 -11.12738 -10.89977 -10.58007 -10.54899 -10.31983 -10.06544 -9.98100 -9.42010 -9.13753 -8.50442 -7.70187 -6.87409 -6.79032 -5.80474 -3.83338 2.40009 2.80013 3.11969 3.23687 3.26251 4.03632 4.04720 4.19482 5.14530 5.47370 5.66235 5.70095 5.76308 5.79930 5.83567 5.90078 5.97291 6.12119 6.13854 6.32421 6.36081 6.50230 6.56533 6.61148 6.74428 6.84291 6.96929 7.05420 7.14030 7.31570 7.44473 7.51245 7.52818 8.31020 8.38541 8.58035 8.73499 9.08931 9.18841 9.88384 10.56033 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.012977 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.534445 B = 2157.217813 C = 3607.695600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.017 3.983 3 C -0.144 4.144 4 C -0.154 4.154 5 C 0.084 3.916 6 C -0.426 4.426 7 H 0.084 0.916 8 C 0.053 3.947 9 N -0.710 5.710 10 Si 0.892 3.108 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.092 3.908 15 N -0.317 5.317 16 C -0.012 4.012 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.049 3.951 20 N -0.464 5.464 21 C 0.091 3.909 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -2.341 -5.456 6.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 C -0.201 4.201 4 C -0.257 4.257 5 C 0.078 3.922 6 C -0.456 4.456 7 H 0.101 0.899 8 C -0.168 4.168 9 N -0.333 5.333 10 Si 0.717 3.283 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.047 4.047 15 N -0.024 5.024 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.176 4.176 19 C -0.065 4.065 20 N -0.148 5.148 21 C -0.053 4.053 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.386 -1.824 -4.990 5.491 hybrid contribution 0.194 -0.290 -0.219 0.412 sum 1.580 -2.114 -5.210 5.840 Atomic orbital electron populations 1.21873 0.95914 1.00941 1.01347 1.18923 0.94453 0.94182 0.92650 1.21877 1.00167 0.96698 1.01365 1.19577 1.14271 0.97222 0.94582 1.17696 0.94666 0.92917 0.86938 1.18911 1.26285 1.08813 0.91591 0.89861 1.26242 0.95811 0.96996 0.97766 1.70721 1.30668 1.29849 1.02067 0.86517 0.80159 0.82132 0.79446 1.18865 1.20331 1.20335 1.20201 1.00308 0.96259 0.87975 1.68380 1.08339 1.13895 1.11822 1.22669 1.01018 0.94931 0.99152 1.21560 1.02225 1.00641 0.93400 1.19974 1.04166 0.98756 0.94752 1.19192 1.02619 0.99099 0.85567 1.42598 1.44921 1.25022 1.02274 1.21547 0.98781 0.97080 0.87879 0.90727 0.94495 0.93854 0.93695 0.94497 0.90712 0.93860 0.91890 0.85555 0.87503 0.88039 0.93312 0.91250 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.02 37.16 0.34 -2.30 16 2 C 0.02 0.33 2.97 -91.77 -0.27 0.06 16 3 C -0.14 -2.64 9.02 37.16 0.34 -2.30 16 4 C -0.15 -3.58 5.69 -80.69 -0.46 -4.04 16 5 C 0.08 2.24 5.91 -104.75 -0.62 1.62 16 6 C -0.43 -11.09 7.56 -37.98 -0.29 -11.38 16 7 H 0.08 2.05 4.59 -52.49 -0.24 1.81 16 8 C 0.05 1.35 5.49 -17.32 -0.10 1.26 16 9 N -0.71 -19.06 8.83 55.54 0.49 -18.57 16 10 Si 0.89 19.18 29.56 -169.99 -5.02 14.16 16 11 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 C 0.09 2.49 6.84 -82.83 -0.57 1.92 16 15 N -0.32 -8.44 6.53 -9.64 -0.06 -8.50 16 16 C -0.01 -0.27 11.17 -17.50 -0.20 -0.46 16 17 C -0.16 -3.19 10.09 -39.40 -0.40 -3.59 16 18 C -0.15 -3.09 10.03 -39.15 -0.39 -3.48 16 19 C 0.05 1.17 6.78 -83.87 -0.57 0.60 16 20 N -0.46 -10.24 3.15 -116.17 -0.37 -10.60 16 21 C 0.09 1.50 10.61 59.85 0.63 2.13 16 22 H 0.07 1.51 5.64 -51.93 -0.29 1.22 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.79 6.54 -51.93 -0.34 0.45 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.51 5.64 -51.93 -0.29 1.22 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.82 8.05 -52.49 -0.42 1.40 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.03 6.86 -51.93 -0.36 0.67 16 35 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -29.34 281.07 -7.73 -37.07 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.46 Total: 2.17 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.55 Total: -19.96 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.06 Total: -37.66 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.34 -7.73 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.783 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds