Wall clock time and date at job start Mon Mar 30 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47192 * 2 1 4 4 N 1.46505 * 109.47215 * 120.00486 * 2 1 3 5 5 C 1.36916 * 124.98267 * 300.29915 * 4 2 1 6 6 C 1.34234 * 109.90623 * 180.18809 * 5 4 2 7 7 C 1.50700 * 126.56219 * 179.83415 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.68205 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.46381 * 106.86831 * 359.56825 * 6 5 4 17 17 C 1.39698 * 134.31834 * 180.26429 * 16 6 5 18 18 C 1.38199 * 118.03840 * 179.97438 * 17 16 6 19 19 C 1.38659 * 119.41357 * 0.02562 * 18 17 16 20 20 N 1.31589 * 121.58268 * 359.97438 * 19 18 17 21 21 C 1.32654 * 121.67209 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.46722 * 299.99515 * 1 2 3 23 23 H 1.08992 * 109.47373 * 59.99751 * 1 2 3 24 24 H 1.09006 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46901 * 240.00052 * 2 1 3 26 26 H 1.09000 * 109.47407 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47413 * 300.00727 * 3 2 1 28 28 H 1.09007 * 109.47155 * 60.00208 * 3 2 1 29 29 H 1.07993 * 125.05137 * 0.03864 * 5 4 2 30 30 H 1.09004 * 109.47210 * 144.68498 * 7 6 5 31 31 H 1.08994 * 109.47551 * 24.68151 * 7 6 5 32 32 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.07997 * 120.97532 * 0.02562 * 17 16 6 34 34 H 1.07997 * 120.29389 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.21340 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7465 -0.3164 2.4848 6 6 2.3480 -1.1568 3.3414 7 6 2.3010 -1.0904 4.8462 8 6 3.5125 -0.3521 5.3545 9 1 4.2431 0.0312 4.6575 10 6 3.6850 -0.1603 6.7090 11 7 2.7951 -0.6267 7.5576 12 14 5.1827 0.7615 7.3385 13 1 5.1893 2.1367 6.7779 14 1 5.1340 0.8312 8.8211 15 1 6.4157 0.0493 6.9171 16 6 3.0529 -2.1537 2.5340 17 6 3.8413 -3.2686 2.8294 18 6 4.3563 -3.9979 1.7745 19 6 4.0780 -3.6043 0.4744 20 7 3.3329 -2.5505 0.2179 21 6 2.8118 -1.8127 1.1894 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.1403 0.5307 2.7698 30 1 2.2938 -2.1011 5.2545 31 1 1.3983 -0.5658 5.1588 32 1 2.9166 -0.4921 8.5106 33 1 4.0416 -3.5525 3.8519 34 1 4.9701 -4.8667 1.9611 35 1 4.4825 -4.1764 -0.3475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260735170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:56 Heat of formation + Delta-G solvation = 57.906493 kcal Electronic energy + Delta-G solvation = -17179.550332 eV Core-core repulsion = 14563.692956 eV Total energy + Delta-G solvation = -2615.857376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04149 -37.70634 -35.04850 -33.05809 -31.97221 -29.98382 -28.77278 -27.27522 -26.76502 -23.32238 -22.99801 -22.21757 -20.41388 -18.65180 -16.74546 -16.30253 -16.10409 -15.35658 -14.81493 -14.48086 -14.40631 -14.04547 -13.15527 -12.98108 -12.47691 -12.37369 -12.34106 -12.13212 -11.96386 -11.74802 -11.61260 -11.03464 -10.98373 -10.88018 -10.67051 -10.39510 -9.87457 -9.65676 -9.24626 -8.81857 -8.37058 -7.79597 -7.05118 -5.98518 -4.02240 1.59986 1.91678 3.03593 3.33839 3.37483 3.38918 3.49311 4.42216 4.51484 4.66858 4.76737 5.02956 5.16538 5.32659 5.36371 5.38569 5.49490 5.56048 5.63888 5.70317 5.71417 5.85241 6.00445 6.08064 6.15958 6.29628 6.41238 6.64653 6.86794 7.15768 7.23013 7.55414 7.62405 7.79063 7.93877 7.97356 8.41178 8.50180 9.02796 9.61180 11.10139 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.007351 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.853699 B = 3808.019790 C = 4595.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.470 5.470 5 C 0.022 3.978 6 C -0.099 4.099 7 C 0.081 3.919 8 C -0.507 4.507 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.896 5.896 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.143 4.143 17 C -0.012 4.012 18 C -0.223 4.223 19 C 0.124 3.876 20 N -0.511 5.511 21 C 0.282 3.718 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.165 0.835 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -1.185 -13.772 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.220 4.220 4 N -0.159 5.159 5 C -0.099 4.099 6 C -0.105 4.105 7 C 0.044 3.956 8 C -0.545 4.545 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.151 4.151 17 C -0.039 4.039 18 C -0.245 4.245 19 C -0.041 4.041 20 N -0.225 5.225 21 C 0.049 3.951 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.182 0.818 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.408 -0.686 -14.675 14.887 hybrid contribution 1.058 0.324 1.248 1.668 sum -1.350 -0.362 -13.427 13.500 Atomic orbital electron populations 1.22167 0.94252 1.02753 1.02701 1.21231 0.94616 0.93492 0.87328 1.22169 1.02084 0.95016 1.02686 1.43797 1.43372 1.22735 1.05979 1.21453 1.05603 1.02135 0.80729 1.21186 0.97875 0.93723 0.97712 1.17723 0.97415 0.97722 0.82785 1.21073 1.06826 1.35250 0.91393 0.92749 1.24991 0.96446 0.95936 0.96936 1.69945 1.35043 1.46169 1.02391 0.86655 0.83390 0.80418 0.77550 1.20303 1.21272 1.20253 1.19955 1.03064 0.98663 0.93409 1.21068 0.91665 0.91394 0.99738 1.21695 1.06018 1.03152 0.93614 1.22196 0.94182 0.91986 0.95784 1.66344 1.12926 1.07339 1.35893 1.18385 0.95977 0.90359 0.90354 0.91687 0.91225 0.92100 0.88498 0.92023 0.91250 0.91624 0.81774 0.95435 0.95440 0.92887 0.84745 0.85423 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.23 37.16 0.34 -1.47 16 2 C 0.14 1.84 3.53 -67.93 -0.24 1.60 16 3 C -0.16 -1.92 9.23 37.15 0.34 -1.58 16 4 N -0.47 -8.31 2.65 -109.16 -0.29 -8.60 16 5 C 0.02 0.42 10.06 -16.69 -0.17 0.25 16 6 C -0.10 -2.20 5.51 -102.76 -0.57 -2.77 16 7 C 0.08 2.09 5.51 -29.03 -0.16 1.93 16 8 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 16 9 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 12 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.14 -3.04 6.37 -105.11 -0.67 -3.71 16 17 C -0.01 -0.24 10.22 -39.05 -0.40 -0.64 16 18 C -0.22 -3.50 10.10 -39.44 -0.40 -3.90 16 19 C 0.12 1.93 11.14 -17.50 -0.20 1.74 16 20 N -0.51 -9.31 10.35 -12.27 -0.13 -9.44 16 21 C 0.28 5.54 7.86 -155.69 -1.22 4.32 16 22 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 1.33 8.02 -51.92 -0.42 0.91 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.79 7.90 -51.92 -0.41 0.38 16 29 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -31.41 301.37 -8.91 -40.32 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.00 Total: -0.59 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -3.74 Total: -17.22 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.32 Total: -43.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.41 -8.91 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260735170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.226 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds