Wall clock time and date at job start Mon Mar 30 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47192 * 2 1 4 4 N 1.46505 * 109.47215 * 120.00486 * 2 1 3 5 5 C 1.36916 * 124.98267 * 300.29915 * 4 2 1 6 6 C 1.34234 * 109.90623 * 180.18809 * 5 4 2 7 7 C 1.50700 * 126.56219 * 179.83415 * 6 5 4 8 8 C 1.50702 * 109.46869 * 264.68205 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.46381 * 106.86831 * 359.56825 * 6 5 4 17 17 C 1.39698 * 134.31834 * 180.26429 * 16 6 5 18 18 C 1.38199 * 118.03840 * 179.97438 * 17 16 6 19 19 C 1.38659 * 119.41357 * 0.02562 * 18 17 16 20 20 N 1.31589 * 121.58268 * 359.97438 * 19 18 17 21 21 C 1.32654 * 121.67209 * 0.02562 * 20 19 18 22 22 H 1.09002 * 109.46722 * 299.99515 * 1 2 3 23 23 H 1.08992 * 109.47373 * 59.99751 * 1 2 3 24 24 H 1.09006 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46901 * 240.00052 * 2 1 3 26 26 H 1.09000 * 109.47407 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47413 * 300.00727 * 3 2 1 28 28 H 1.09007 * 109.47155 * 60.00208 * 3 2 1 29 29 H 1.07993 * 125.05137 * 0.03864 * 5 4 2 30 30 H 1.09004 * 109.47210 * 144.68498 * 7 6 5 31 31 H 1.08994 * 109.47551 * 24.68151 * 7 6 5 32 32 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 33 33 H 1.07997 * 120.97532 * 0.02562 * 17 16 6 34 34 H 1.07997 * 120.29389 * 180.02562 * 18 17 16 35 35 H 1.08002 * 119.21340 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7465 -0.3164 2.4848 6 6 2.3480 -1.1568 3.3414 7 6 2.3010 -1.0904 4.8462 8 6 3.5125 -0.3521 5.3545 9 1 4.2431 0.0312 4.6575 10 6 3.6850 -0.1603 6.7090 11 7 2.7951 -0.6267 7.5576 12 14 5.1827 0.7615 7.3385 13 1 5.1893 2.1367 6.7779 14 1 5.1340 0.8312 8.8211 15 1 6.4157 0.0493 6.9171 16 6 3.0529 -2.1537 2.5340 17 6 3.8413 -3.2686 2.8294 18 6 4.3563 -3.9979 1.7745 19 6 4.0780 -3.6043 0.4744 20 7 3.3329 -2.5505 0.2179 21 6 2.8118 -1.8127 1.1894 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.1403 0.5307 2.7698 30 1 2.2938 -2.1011 5.2545 31 1 1.3983 -0.5658 5.1588 32 1 2.9166 -0.4921 8.5106 33 1 4.0416 -3.5525 3.8519 34 1 4.9701 -4.8667 1.9611 35 1 4.4825 -4.1764 -0.3475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260735170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:55 Heat of formation + Delta-G solvation = 41.246712 kcal Electronic energy + Delta-G solvation = -17180.272754 eV Core-core repulsion = 14563.692956 eV Total energy + Delta-G solvation = -2616.579798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.70 seconds Orbital eigenvalues (eV) -42.45550 -39.02563 -36.44512 -34.97564 -33.40549 -31.73047 -30.13781 -28.53037 -28.18979 -25.21845 -24.44837 -23.54894 -21.76594 -20.13762 -18.46036 -18.07160 -17.53614 -16.74805 -16.39384 -16.17064 -15.60506 -15.19982 -14.40264 -14.31405 -14.23638 -14.01484 -13.87626 -13.44576 -13.27485 -13.06077 -12.82323 -12.76131 -12.59379 -12.24570 -12.12603 -12.01319 -11.69575 -11.54698 -11.00151 -10.57852 -10.22860 -9.18603 -8.64396 -8.11483 -6.28046 0.17227 0.54548 1.39084 1.41593 1.49745 1.71478 1.89646 2.43718 3.05541 3.13878 3.46502 3.66953 3.96082 4.02291 4.02693 4.16946 4.23253 4.42156 4.53738 4.66208 4.69206 4.81395 4.82589 4.87590 4.96878 5.07634 5.18690 5.22915 5.34946 5.45320 5.58690 5.72488 5.79373 5.91176 6.20802 6.30318 6.41920 6.83322 7.12856 7.39788 8.92739 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.007351 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.853699 B = 3808.019790 C = 4595.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 C -0.156 4.156 4 N -0.465 5.465 5 C 0.044 3.956 6 C -0.149 4.149 7 C 0.096 3.904 8 C -0.522 4.522 9 H 0.046 0.954 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.959 3.041 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.272 1.272 16 C -0.177 4.177 17 C -0.042 4.042 18 C -0.204 4.204 19 C 0.130 3.870 20 N -0.518 5.518 21 C 0.265 3.735 22 H 0.063 0.937 23 H 0.102 0.898 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.043 0.957 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.184 0.816 30 H -0.003 1.003 31 H 0.008 0.992 32 H 0.265 0.735 33 H 0.122 0.878 34 H 0.167 0.833 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -0.840 -16.026 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.152 5.152 5 C -0.079 4.079 6 C -0.156 4.156 7 C 0.059 3.941 8 C -0.560 4.560 9 H 0.064 0.936 10 C -0.191 4.191 11 N -0.570 5.570 12 Si 0.784 3.216 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.197 1.197 16 C -0.185 4.185 17 C -0.068 4.068 18 C -0.225 4.225 19 C -0.036 4.036 20 N -0.232 5.232 21 C 0.033 3.967 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.201 0.799 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.185 0.815 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.571 -0.334 -16.965 17.041 hybrid contribution 0.797 0.126 1.847 2.015 sum -0.774 -0.208 -15.118 15.140 Atomic orbital electron populations 1.22142 0.92284 1.02486 1.04292 1.21602 0.96155 0.93991 0.85505 1.22153 1.00948 0.94035 1.04244 1.44068 1.42429 1.22240 1.06483 1.21584 1.03824 1.01254 0.81230 1.20870 1.01727 0.96808 0.96167 1.17343 0.95842 0.95221 0.85700 1.21328 1.07405 1.35502 0.91736 0.93580 1.25841 0.99450 0.96704 0.97061 1.70066 1.36903 1.47249 1.02746 0.85595 0.79549 0.79258 0.77214 1.19370 1.20371 1.19725 1.20174 1.04424 0.99622 0.94261 1.21240 0.92997 0.92154 1.00449 1.22111 1.04583 1.03131 0.92715 1.23074 0.92396 0.90994 0.97149 1.66499 1.13420 1.08019 1.35258 1.18587 0.96840 0.91302 0.90000 0.91778 0.87934 0.93286 0.88363 0.93737 0.87823 0.91923 0.79913 0.98516 0.97414 0.92623 0.85998 0.81525 0.78491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.23 71.98 0.66 -2.47 16 2 C 0.13 3.24 3.53 44.99 0.16 3.40 16 3 C -0.16 -3.38 9.23 71.98 0.66 -2.71 16 4 N -0.46 -16.26 2.65 -499.28 -1.32 -17.58 16 5 C 0.04 1.73 10.06 82.98 0.83 2.57 16 6 C -0.15 -7.00 5.51 -18.66 -0.10 -7.10 16 7 C 0.10 5.31 5.51 29.10 0.16 5.47 16 8 C -0.52 -30.46 9.09 25.60 0.23 -30.23 16 9 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 10 C 0.01 0.43 5.46 84.66 0.46 0.89 16 11 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 12 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 C -0.18 -7.78 6.37 -20.18 -0.13 -7.90 16 17 C -0.04 -1.63 10.22 22.61 0.23 -1.40 16 18 C -0.20 -6.00 10.10 22.36 0.23 -5.77 16 19 C 0.13 3.64 11.14 84.83 0.95 4.59 16 20 N -0.52 -17.93 10.35 -192.74 -1.99 -19.93 16 21 C 0.26 10.36 7.86 133.93 1.05 11.41 16 22 H 0.06 1.32 7.88 -2.39 -0.02 1.30 16 23 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.10 2.48 8.02 -2.38 -0.02 2.46 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.39 7.90 -2.38 -0.02 1.38 16 29 H 0.18 6.22 8.06 -2.91 -0.02 6.20 16 30 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.26 15.08 8.31 -92.70 -0.77 14.30 16 33 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.87 301.37 5.46 -65.42 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.06 Total: 10.44 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 5.40 Total: -29.26 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.03 Total: -93.56 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.87 5.46 -65.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260735170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.662 kcal (2) G-P(sol) polarization free energy of solvation -70.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.70 seconds