Wall clock time and date at job start Mon Mar 30 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35107 * 126.40928 * 2 1 4 4 C 1.50697 * 125.68697 * 0.02562 * 3 2 1 5 5 H 1.08989 * 109.47357 * 359.97365 * 4 3 2 6 6 C 1.53000 * 109.47260 * 119.97704 * 4 3 2 7 7 C 1.50701 * 109.46736 * 239.97138 * 4 3 2 8 8 H 1.07999 * 120.00183 * 0.02562 * 7 4 3 9 9 C 1.37880 * 120.00006 * 180.02562 * 7 4 3 10 10 N 1.31520 * 119.99522 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 120.00256 * 180.02562 * 9 7 4 12 12 H 1.48499 * 109.46957 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47109 * 119.99954 * 11 9 7 14 14 H 1.48500 * 109.46947 * 239.99538 * 11 9 7 15 15 N 1.33517 * 108.62417 * 179.97438 * 3 2 1 16 16 C 1.32556 * 109.16253 * 0.02562 * 15 3 2 17 17 C 1.40938 * 132.33137 * 179.97438 * 16 15 3 18 18 C 1.36020 * 119.32817 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.15278 * 180.02562 * 18 17 16 20 20 C 1.40473 * 119.69503 * 0.02562 * 18 17 16 21 21 C 1.34954 * 120.29818 * 359.97438 * 20 18 17 22 22 N 1.36479 * 120.61223 * 359.97438 * 21 20 18 23 23 H 1.09004 * 109.46830 * 89.99693 * 1 2 3 24 24 H 1.08999 * 109.47273 * 209.99953 * 1 2 3 25 25 H 1.08998 * 109.47108 * 330.00621 * 1 2 3 26 26 H 1.08996 * 109.47475 * 179.97438 * 6 4 3 27 27 H 1.09010 * 109.46960 * 299.99625 * 6 4 3 28 28 H 1.09003 * 109.47700 * 59.99337 * 6 4 3 29 29 H 0.97006 * 119.99893 * 180.02562 * 10 9 7 30 30 H 1.07993 * 120.33391 * 0.04253 * 17 16 15 31 31 H 1.08993 * 109.47266 * 269.97759 * 19 18 17 32 32 H 1.08998 * 109.46797 * 29.98249 * 19 18 17 33 33 H 1.09003 * 109.46742 * 149.98042 * 19 18 17 34 34 H 1.07998 * 119.85394 * 180.02562 * 20 18 17 35 35 H 1.08006 * 119.69263 * 179.72270 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3089 1.0873 0.0000 4 6 1.8456 2.5213 0.0005 5 1 0.7562 2.5512 0.0005 6 6 2.3751 3.2279 1.2501 7 6 2.3674 3.2182 -1.2296 8 1 2.9734 2.6767 -1.9408 9 6 2.0711 4.5471 -1.4471 10 7 1.3326 5.2063 -0.5812 11 14 2.7172 5.4107 -2.9722 12 1 3.5160 4.4553 -3.7811 13 1 1.5752 5.9097 -3.7797 14 1 3.5744 6.5539 -2.5679 15 7 3.5803 0.6795 0.0006 16 6 3.6121 -0.6457 0.0004 17 6 4.6765 -1.5694 0.0003 18 6 4.4024 -2.9017 -0.0005 19 6 5.5263 -3.9058 0.0000 20 6 3.0670 -3.3374 -0.0017 21 6 2.0583 -2.4409 -0.0016 22 7 2.3192 -1.1012 0.0002 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 2.0405 4.2652 1.2503 27 1 1.9978 2.7238 2.1399 28 1 3.4647 3.1981 1.2502 29 1 1.1238 6.1412 -0.7343 30 1 5.6994 -1.2230 0.0011 31 1 5.7977 -4.1478 -1.0274 32 1 6.3898 -3.4842 0.5144 33 1 5.2039 -4.8116 0.5136 34 1 2.8464 -4.3947 -0.0018 35 1 1.0351 -2.7867 -0.0071 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:50 Heat of formation + Delta-G solvation = 71.078895 kcal Electronic energy + Delta-G solvation = -17201.454748 eV Core-core repulsion = 14586.168570 eV Total energy + Delta-G solvation = -2615.286178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24359 -37.58155 -34.43034 -33.54886 -31.72054 -30.36813 -28.98826 -28.23918 -25.09254 -24.86648 -23.12602 -21.62971 -20.85157 -18.94229 -16.95533 -16.35438 -15.97786 -15.39341 -14.88428 -14.49178 -14.42851 -13.53531 -13.18127 -12.80505 -12.66007 -12.52926 -12.34526 -11.99947 -11.79054 -11.55106 -11.33747 -11.14532 -10.85782 -10.56690 -10.30253 -10.17926 -10.01671 -9.77256 -9.13009 -8.85973 -8.28809 -7.93557 -7.10378 -5.91776 -3.95250 1.08859 1.67032 3.08042 3.36341 3.43119 3.46086 3.52364 4.08195 4.53518 4.58191 4.68234 5.01771 5.05161 5.25667 5.38890 5.44651 5.52268 5.55402 5.73350 5.73978 5.99216 5.99630 6.12024 6.22141 6.33962 6.48959 6.62138 6.92823 6.98631 7.12876 7.30074 7.52574 7.62617 7.78859 8.00017 8.18905 8.47303 8.76830 9.06029 9.67382 11.14495 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.006146 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.984607 B = 4554.580295 C = 4934.698357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.098 4.098 3 C 0.125 3.875 4 C 0.110 3.890 5 H 0.043 0.957 6 C -0.128 4.128 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 N -0.473 5.473 16 C 0.205 3.795 17 C -0.075 4.075 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.158 4.158 21 C 0.063 3.937 22 N -0.365 5.365 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.004 0.996 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.143 0.857 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -16.920 2.132 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.208 4.208 3 C -0.007 4.007 4 C 0.090 3.910 5 H 0.061 0.939 6 C -0.186 4.186 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 N -0.193 5.193 16 C -0.037 4.037 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.161 4.161 20 C -0.179 4.179 21 C -0.060 4.060 22 N -0.039 5.039 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.161 0.839 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.865 -16.179 2.159 16.428 hybrid contribution -0.364 -0.123 -0.870 0.951 sum 1.501 -16.301 1.289 16.421 Atomic orbital electron populations 1.20068 0.87070 1.02511 1.02247 1.21104 0.94450 0.84733 1.20489 1.21774 0.86927 0.97170 0.94818 1.17442 0.96004 0.82002 0.95535 0.93880 1.21705 0.99418 1.02966 0.94523 1.21042 1.31467 0.95145 1.05335 0.92504 1.24919 0.95253 0.97278 0.96644 1.69894 1.38358 1.09825 1.35330 0.86498 0.78612 0.79526 0.83177 1.19875 1.21146 1.21015 1.70766 1.22456 1.04750 1.21314 1.21050 0.83635 0.91500 1.07517 1.20015 0.97350 0.90260 1.01964 1.19556 0.94716 0.93867 1.01495 1.20674 0.95934 0.97174 1.02308 1.20475 0.91509 0.99281 1.06667 1.21444 1.00740 0.81371 1.02428 1.42738 1.09246 1.05030 1.46924 0.91509 0.93013 0.89514 0.89544 0.97703 0.94649 0.93116 0.83928 0.91171 0.91383 0.91558 0.84152 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 9.94 36.00 0.36 -0.64 16 2 C -0.10 -2.00 7.03 -81.47 -0.57 -2.57 16 3 C 0.13 3.05 5.50 -82.97 -0.46 2.59 16 4 C 0.11 2.90 2.65 -92.92 -0.25 2.65 16 5 H 0.04 1.15 6.77 -51.94 -0.35 0.80 16 6 C -0.13 -3.32 8.95 37.16 0.33 -2.99 16 7 C -0.49 -14.21 8.55 -34.44 -0.29 -14.50 16 8 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 9 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 10 N -0.89 -25.81 11.32 55.43 0.63 -25.19 16 11 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 15 N -0.47 -11.52 11.32 -9.00 -0.10 -11.63 16 16 C 0.20 4.18 7.81 -156.04 -1.22 2.96 16 17 C -0.08 -1.21 9.75 -39.36 -0.38 -1.59 16 18 C -0.09 -1.14 5.88 -104.58 -0.62 -1.76 16 19 C -0.10 -0.91 10.02 36.01 0.36 -0.55 16 20 C -0.16 -1.85 9.67 -39.91 -0.39 -2.24 16 21 C 0.06 0.88 10.85 -16.65 -0.18 0.69 16 22 N -0.36 -6.79 2.94 -58.46 -0.17 -6.96 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.45 7.13 -51.93 -0.37 1.08 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.00 0.09 8.14 -51.92 -0.42 -0.33 16 28 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -32.79 295.43 -8.41 -41.20 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -4.80 Total: -2.63 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.40 Total: -16.35 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.35 Total: -43.77 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.79 -8.41 -41.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.279 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds