Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 C 1.52992 * 109.47636 * 239.99423 * 2 1 3 5 5 C 1.50698 * 109.46769 * 119.99234 * 2 1 3 6 6 N 1.35590 * 125.35727 * 0.03115 * 5 2 1 7 7 H 0.97001 * 124.72296 * 0.02562 * 6 5 2 8 8 C 1.38030 * 110.54555 * 179.97438 * 6 5 2 9 9 C 1.39282 * 133.09795 * 180.02562 * 8 6 5 10 10 C 1.38376 * 118.32466 * 180.02562 * 9 8 6 11 11 C 1.38596 * 119.62932 * 359.92639 * 10 9 8 12 12 N 1.31634 * 121.14306 * 0.03691 * 11 10 9 13 13 C 1.32623 * 121.46279 * 359.97438 * 12 11 10 14 14 C 1.38889 * 125.35423 * 179.97438 * 5 2 1 15 15 C 1.40961 * 126.88683 * 0.02562 * 14 5 2 16 16 H 1.08001 * 120.00020 * 0.02562 * 15 14 5 17 17 C 1.39757 * 120.00013 * 179.97438 * 15 14 5 18 18 N 1.31044 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46861 * 60.00238 * 19 17 15 21 21 H 1.48500 * 109.46706 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47432 * 300.00148 * 19 17 15 23 23 H 1.08998 * 109.47390 * 300.00453 * 1 2 3 24 24 H 1.09000 * 109.46457 * 60.00372 * 1 2 3 25 25 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47143 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47234 * 299.99152 * 3 2 1 28 28 H 1.08998 * 109.47441 * 59.99578 * 3 2 1 29 29 H 1.09002 * 109.47394 * 300.00591 * 4 2 1 30 30 H 1.09005 * 109.46803 * 60.00149 * 4 2 1 31 31 H 1.08997 * 109.47615 * 180.02562 * 4 2 1 32 32 H 1.07997 * 120.84157 * 359.97438 * 9 8 6 33 33 H 1.08001 * 120.18361 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.42484 * 180.32218 * 11 10 9 35 35 H 0.96998 * 119.99747 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7102 1.2306 6 7 1.2512 -1.2648 2.1902 7 1 0.2812 -1.2617 2.1831 8 6 2.0286 -1.8353 3.1778 9 6 1.7242 -2.5156 4.3544 10 6 2.7694 -2.9686 5.1401 11 6 4.0765 -2.7382 4.7409 12 7 4.3438 -2.0937 3.6247 13 6 3.3768 -1.6402 2.8386 14 6 3.3681 -0.9007 1.5596 15 6 4.4905 -0.4745 0.8210 16 1 4.3546 0.0617 -0.1066 17 6 5.7791 -0.7450 1.2895 18 7 5.9440 -1.3952 2.4152 19 14 7.2665 -0.1808 0.3103 20 1 7.2374 1.2977 0.1736 21 1 8.5076 -0.5877 1.0169 22 1 7.2369 -0.8031 -1.0376 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1391 31 1 3.1301 -0.7217 -1.2488 32 1 0.6984 -2.6847 4.6467 33 1 2.5677 -3.4993 6.0588 34 1 4.8896 -3.0977 5.3539 35 1 6.8384 -1.5825 2.7406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260766553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = 74.845358 kcal Electronic energy + Delta-G solvation = -17939.072066 eV Core-core repulsion = 15323.949214 eV Total energy + Delta-G solvation = -2615.122852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96299 -37.09667 -34.72112 -33.61537 -30.87774 -29.25165 -27.73996 -26.41160 -26.41068 -24.86005 -22.41396 -21.08778 -19.91167 -18.17555 -16.72275 -16.12288 -14.97999 -14.72649 -14.62181 -13.75886 -13.70379 -13.32649 -13.02990 -12.52321 -12.41542 -11.85594 -11.73259 -11.64049 -11.14996 -11.11418 -10.98495 -10.95801 -10.84874 -10.62691 -10.15868 -10.14152 -10.01581 -9.42613 -9.20109 -8.50019 -7.70437 -6.92123 -6.84033 -5.79712 -3.83875 2.40863 2.82148 3.15021 3.22565 3.24313 4.07170 4.14148 4.47626 5.17299 5.50635 5.64503 5.64613 5.81062 5.85419 5.91689 6.10436 6.12848 6.27063 6.29707 6.36646 6.41218 6.45285 6.63292 6.66434 6.74191 6.84290 7.01526 7.04893 7.17990 7.30238 7.43036 7.48980 7.52465 8.30557 8.33800 8.66815 8.77994 9.14661 9.19065 9.88886 10.56711 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.014187 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.279064 B = 1973.210930 C = 3668.429180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.147 4.147 6 N -0.573 5.573 7 H 0.389 0.611 8 C 0.046 3.954 9 C -0.149 4.149 10 C -0.157 4.157 11 C -0.012 4.012 12 N -0.317 5.317 13 C 0.091 3.909 14 C 0.083 3.917 15 C -0.427 4.427 16 H 0.082 0.918 17 C 0.053 3.947 18 N -0.710 5.710 19 Si 0.892 3.108 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.270 1.270 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 0.714 -1.247 5.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.251 4.251 6 N -0.175 5.175 7 H 0.223 0.777 8 C -0.069 4.069 9 C -0.179 4.179 10 C -0.178 4.178 11 C -0.178 4.178 12 N -0.025 5.025 13 C -0.049 4.049 14 C 0.076 3.924 15 C -0.458 4.458 16 H 0.100 0.900 17 C -0.168 4.168 18 N -0.334 5.334 19 Si 0.717 3.283 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.195 1.195 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.777 0.836 -1.459 5.064 hybrid contribution -0.728 -0.065 0.112 0.740 sum -5.505 0.772 -1.347 5.720 Atomic orbital electron populations 1.21874 0.96777 1.00625 1.00727 1.18386 0.92374 0.93779 0.91430 1.21914 1.03243 0.95116 0.99340 1.21913 1.03246 0.99087 0.95367 1.19443 0.89078 1.19530 0.97062 1.40708 1.06328 1.50943 1.19494 0.77671 1.19190 0.93844 1.01421 0.92454 1.19992 0.98092 1.04846 0.94935 1.21557 0.94479 1.02299 0.99487 1.22665 0.93810 1.03992 0.97370 1.68370 1.33194 1.01481 0.99410 1.20183 0.85549 1.02018 0.97114 1.17671 0.90431 0.94360 0.89910 1.18839 0.89067 1.31513 1.06366 0.90003 1.26230 1.00281 0.94892 0.95380 1.70692 1.22443 1.25732 1.14486 0.86645 0.81343 0.79765 0.80512 1.19462 1.20666 1.19455 0.93431 0.93152 0.93437 0.90725 0.94414 0.93731 0.93734 0.94414 0.90720 0.87977 0.87523 0.85600 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.46 37.16 0.28 -1.92 16 2 C 0.04 0.77 0.75 -155.66 -0.12 0.65 16 3 C -0.14 -2.51 8.30 37.16 0.31 -2.20 16 4 C -0.14 -2.51 8.30 37.15 0.31 -2.20 16 5 C -0.15 -3.31 5.64 -80.69 -0.46 -3.76 16 6 N -0.57 -12.18 5.76 -6.14 -0.04 -12.22 16 7 H 0.39 6.95 7.79 -40.82 -0.32 6.63 16 8 C 0.05 1.08 7.25 -83.88 -0.61 0.47 16 9 C -0.15 -3.08 10.20 -39.14 -0.40 -3.48 16 10 C -0.16 -3.16 10.09 -39.40 -0.40 -3.56 16 11 C -0.01 -0.28 11.17 -17.50 -0.20 -0.47 16 12 N -0.32 -8.37 6.53 -9.65 -0.06 -8.44 16 13 C 0.09 2.42 6.84 -82.84 -0.57 1.86 16 14 C 0.08 2.17 5.91 -104.74 -0.62 1.55 16 15 C -0.43 -11.05 7.56 -37.98 -0.29 -11.34 16 16 H 0.08 1.99 4.59 -52.49 -0.24 1.75 16 17 C 0.05 1.36 5.49 -17.32 -0.10 1.26 16 18 N -0.71 -19.00 8.83 55.54 0.49 -18.51 16 19 Si 0.89 19.13 29.56 -169.99 -5.02 14.11 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 26 H 0.07 1.49 5.64 -51.93 -0.29 1.20 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.49 5.64 -51.93 -0.29 1.20 16 32 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 2.51 8.06 -52.49 -0.42 2.08 16 35 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 279.84 15.07 4.22 4.22 Total: -1.00 -28.55 279.84 -7.76 -36.30 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.49 Total: 7.68 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.85 Total: -23.15 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.39 Total: -39.16 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.55 -7.76 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260766553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds