Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 C 1.52992 * 109.47636 * 239.99423 * 2 1 3 5 5 C 1.50698 * 109.46769 * 119.99234 * 2 1 3 6 6 N 1.35590 * 125.35727 * 0.03115 * 5 2 1 7 7 H 0.97001 * 124.72296 * 0.02562 * 6 5 2 8 8 C 1.38030 * 110.54555 * 179.97438 * 6 5 2 9 9 C 1.39282 * 133.09795 * 180.02562 * 8 6 5 10 10 C 1.38376 * 118.32466 * 180.02562 * 9 8 6 11 11 C 1.38596 * 119.62932 * 359.92639 * 10 9 8 12 12 N 1.31634 * 121.14306 * 0.03691 * 11 10 9 13 13 C 1.32623 * 121.46279 * 359.97438 * 12 11 10 14 14 C 1.38889 * 125.35423 * 179.97438 * 5 2 1 15 15 C 1.40961 * 126.88683 * 0.02562 * 14 5 2 16 16 H 1.08001 * 120.00020 * 0.02562 * 15 14 5 17 17 C 1.39757 * 120.00013 * 179.97438 * 15 14 5 18 18 N 1.31044 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46861 * 60.00238 * 19 17 15 21 21 H 1.48500 * 109.46706 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47432 * 300.00148 * 19 17 15 23 23 H 1.08998 * 109.47390 * 300.00453 * 1 2 3 24 24 H 1.09000 * 109.46457 * 60.00372 * 1 2 3 25 25 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47143 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47234 * 299.99152 * 3 2 1 28 28 H 1.08998 * 109.47441 * 59.99578 * 3 2 1 29 29 H 1.09002 * 109.47394 * 300.00591 * 4 2 1 30 30 H 1.09005 * 109.46803 * 60.00149 * 4 2 1 31 31 H 1.08997 * 109.47615 * 180.02562 * 4 2 1 32 32 H 1.07997 * 120.84157 * 359.97438 * 9 8 6 33 33 H 1.08001 * 120.18361 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.42484 * 180.32218 * 11 10 9 35 35 H 0.96998 * 119.99747 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7102 1.2306 6 7 1.2512 -1.2648 2.1902 7 1 0.2812 -1.2617 2.1831 8 6 2.0286 -1.8353 3.1778 9 6 1.7242 -2.5156 4.3544 10 6 2.7694 -2.9686 5.1401 11 6 4.0765 -2.7382 4.7409 12 7 4.3438 -2.0937 3.6247 13 6 3.3768 -1.6402 2.8386 14 6 3.3681 -0.9007 1.5596 15 6 4.4905 -0.4745 0.8210 16 1 4.3546 0.0617 -0.1066 17 6 5.7791 -0.7450 1.2895 18 7 5.9440 -1.3952 2.4152 19 14 7.2665 -0.1808 0.3103 20 1 7.2374 1.2977 0.1736 21 1 8.5076 -0.5877 1.0169 22 1 7.2369 -0.8031 -1.0376 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7490 -1.2491 30 1 1.6768 -0.2075 -2.1391 31 1 3.1301 -0.7217 -1.2488 32 1 0.6984 -2.6847 4.6467 33 1 2.5677 -3.4993 6.0588 34 1 4.8896 -3.0977 5.3539 35 1 6.8384 -1.5825 2.7406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260766553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = 59.000727 kcal Electronic energy + Delta-G solvation = -17939.759140 eV Core-core repulsion = 15323.949214 eV Total energy + Delta-G solvation = -2615.809926 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69649 -38.74304 -36.30834 -35.40696 -32.61579 -31.01143 -29.45955 -27.86702 -27.76274 -26.69317 -24.09560 -22.79808 -21.65456 -19.82194 -18.44180 -17.84417 -16.69892 -16.43833 -16.32489 -15.35852 -15.34535 -14.85932 -14.56971 -14.25422 -13.96627 -13.56155 -13.09004 -13.05076 -12.84267 -12.77064 -12.61747 -12.53113 -12.38101 -12.27793 -11.81729 -11.61657 -11.59985 -11.21054 -10.85996 -10.27503 -9.45527 -8.70010 -8.63006 -7.60161 -5.69940 0.71628 1.07021 1.43506 1.45251 1.53758 2.27180 2.36907 2.80367 3.36383 3.95417 3.99949 4.22737 4.29282 4.34921 4.35516 4.54487 4.66679 4.84255 4.90203 4.94039 4.98514 5.04035 5.10472 5.16028 5.25066 5.26827 5.37003 5.50313 5.63713 5.69954 5.71603 5.78587 5.85307 6.49796 6.53665 6.83412 7.04677 7.31846 7.44787 8.14060 8.75066 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.014187 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.279064 B = 1973.210930 C = 3668.429180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.119 4.119 6 N -0.562 5.562 7 H 0.408 0.592 8 C 0.023 3.977 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.024 4.024 12 N -0.358 5.358 13 C 0.040 3.960 14 C 0.028 3.972 15 C -0.454 4.454 16 H 0.085 0.915 17 C 0.006 3.994 18 N -0.748 5.748 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 0.839 -1.465 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.032 3.968 3 C -0.191 4.191 4 C -0.191 4.191 5 C -0.225 4.225 6 N -0.165 5.165 7 H 0.245 0.755 8 C -0.092 4.092 9 C -0.169 4.169 10 C -0.172 4.172 11 C -0.192 4.192 12 N -0.065 5.065 13 C -0.098 4.098 14 C 0.021 3.979 15 C -0.486 4.486 16 H 0.103 0.897 17 C -0.211 4.211 18 N -0.372 5.372 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.195 0.970 -1.692 7.455 hybrid contribution -0.175 -0.146 0.254 0.342 sum -7.371 0.823 -1.438 7.555 Atomic orbital electron populations 1.21814 0.93615 1.01520 1.02386 1.18615 0.94956 0.93547 0.89696 1.21846 1.01562 0.95028 1.00711 1.21845 1.01566 0.99233 0.96505 1.20138 0.88503 1.16451 0.97395 1.40698 1.07181 1.49998 1.18648 0.75469 1.19454 0.93158 1.02638 0.93953 1.20492 1.00286 1.02714 0.93361 1.21956 0.93116 1.01441 1.00722 1.23178 0.95986 1.03288 0.96757 1.68266 1.34495 1.02914 1.00830 1.20547 0.87247 1.03880 0.98125 1.18195 0.92138 0.96454 0.91096 1.19031 0.89774 1.32813 1.06940 0.89701 1.26933 1.02674 0.95120 0.96347 1.70937 1.22178 1.27976 1.16154 0.85655 0.78035 0.79252 0.79060 1.19076 1.20672 1.19067 0.92924 0.90450 0.92929 0.93377 0.91082 0.94226 0.94229 0.91082 0.93372 0.83962 0.82977 0.83880 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 7.46 71.98 0.54 -3.16 16 2 C 0.03 1.17 0.75 -52.93 -0.04 1.13 16 3 C -0.13 -4.66 8.30 71.98 0.60 -4.07 16 4 C -0.13 -4.66 8.30 71.98 0.60 -4.07 16 5 C -0.12 -5.31 5.64 42.13 0.24 -5.07 16 6 N -0.56 -23.18 5.76 -173.32 -1.00 -24.18 16 7 H 0.41 13.49 7.79 -92.71 -0.72 12.77 16 8 C 0.02 1.06 7.25 38.94 0.28 1.34 16 9 C -0.14 -5.39 10.20 22.55 0.23 -5.16 16 10 C -0.15 -5.72 10.09 22.39 0.23 -5.50 16 11 C -0.02 -1.11 11.17 84.81 0.95 -0.16 16 12 N -0.36 -19.54 6.53 -184.44 -1.20 -20.74 16 13 C 0.04 2.17 6.84 42.06 0.29 2.46 16 14 C 0.03 1.49 5.91 -19.94 -0.12 1.37 16 15 C -0.45 -24.64 7.56 23.30 0.18 -24.46 16 16 H 0.09 4.33 4.59 -2.91 -0.01 4.31 16 17 C 0.01 0.31 5.49 85.18 0.47 0.78 16 18 N -0.75 -42.33 8.83 21.80 0.19 -42.14 16 19 Si 0.96 41.24 29.56 68.60 2.03 43.27 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H 0.05 1.38 8.02 -2.39 -0.02 1.36 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.38 8.02 -2.39 -0.02 1.36 16 26 H 0.05 1.93 5.64 -2.38 -0.01 1.92 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.05 1.93 5.64 -2.39 -0.01 1.92 16 32 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 33 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.14 5.69 8.06 -2.91 -0.02 5.66 16 35 H 0.26 14.13 8.30 -92.71 -0.77 13.36 16 Total: -1.00 -65.66 279.84 4.83 -60.83 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.38 Total: 27.53 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 4.43 Total: -44.57 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.01 Total: -87.06 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -65.66 4.83 -60.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260766553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.833 kcal (2) G-P(sol) polarization free energy of solvation -65.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds