Wall clock time and date at job start Mon Mar 30 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36627 * 120.06891 * 2 1 4 4 C 1.38923 * 120.81234 * 179.97438 * 3 2 1 5 5 C 1.36501 * 120.63154 * 0.06149 * 4 3 2 6 6 C 1.39910 * 119.63132 * 359.91663 * 5 4 3 7 7 C 1.45931 * 134.03402 * 180.02562 * 6 5 4 8 8 C 1.50706 * 126.10344 * 359.97438 * 7 6 5 9 9 H 1.08995 * 109.47415 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.46708 * 119.99862 * 8 7 6 11 11 C 1.50700 * 109.46871 * 239.99525 * 8 7 6 12 12 H 1.08001 * 120.00017 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99556 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00032 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99730 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47254 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47191 * 119.99885 * 15 13 11 18 18 H 1.48493 * 109.47336 * 240.00322 * 15 13 11 19 19 N 1.30236 * 107.78654 * 180.24243 * 7 6 5 20 20 N 1.39870 * 110.09311 * 359.61774 * 19 7 6 21 21 C 1.46507 * 125.45917 * 180.15197 * 20 19 7 22 22 C 1.37045 * 109.08243 * 0.39230 * 20 19 7 23 23 H 1.08999 * 109.47198 * 270.02376 * 1 2 3 24 24 H 1.08995 * 109.47140 * 30.02578 * 1 2 3 25 25 H 1.08997 * 109.46642 * 150.02264 * 1 2 3 26 26 H 1.08003 * 119.59959 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.68618 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.18369 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46792 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47539 * 299.99802 * 10 8 7 31 31 H 1.09005 * 109.47120 * 60.00102 * 10 8 7 32 32 H 0.97006 * 119.99631 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.46816 * 270.28646 * 21 20 19 34 34 H 1.09001 * 109.47060 * 30.28200 * 21 20 19 35 35 H 1.09002 * 109.47077 * 150.28617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1824 0.0000 4 6 3.5807 1.2004 0.0005 5 6 4.2914 0.0350 -0.0002 6 6 3.6132 -1.1887 0.0003 7 6 4.0392 -2.5845 0.0003 8 6 5.4630 -3.0784 -0.0009 9 1 6.1431 -2.2267 -0.0013 10 6 5.7095 -3.9266 1.2484 11 6 5.7036 -3.9146 -1.2313 12 1 4.9054 -4.0723 -1.9416 13 6 6.9427 -4.4784 -1.4502 14 7 7.9144 -4.2868 -0.5850 15 14 7.2411 -5.5143 -2.9757 16 1 5.9966 -5.5756 -3.7838 17 1 8.3263 -4.9032 -3.7845 18 1 7.6377 -6.8872 -2.5720 19 7 2.9692 -3.3270 -0.0044 20 7 1.8256 -2.5218 0.0012 21 6 0.4436 -3.0083 0.0015 22 6 2.2048 -1.2049 0.0009 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6462 2.1146 -0.0004 27 1 4.1034 2.1456 0.0001 28 1 5.3711 0.0575 -0.0002 29 1 6.7392 -4.2842 1.2473 30 1 5.5355 -3.3218 2.1384 31 1 5.0294 -4.7784 1.2492 32 1 8.7860 -4.6838 -0.7388 33 1 0.1009 -3.1292 -1.0261 34 1 0.3965 -3.9683 0.5155 35 1 -0.1946 -2.2893 0.5152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:50 Heat of formation + Delta-G solvation = 76.710611 kcal Electronic energy + Delta-G solvation = -17320.012862 eV Core-core repulsion = 14704.970894 eV Total energy + Delta-G solvation = -2615.041968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76309 -36.97060 -34.88519 -33.21574 -31.29304 -30.04137 -29.20936 -27.24760 -25.21282 -24.98915 -22.37628 -21.62204 -21.09722 -18.33464 -16.59379 -16.18955 -15.77335 -15.06839 -14.95448 -14.58829 -14.00364 -13.36636 -13.17924 -13.02921 -12.75638 -12.58480 -12.40875 -12.00090 -11.57458 -11.14264 -11.10000 -10.93458 -10.73245 -10.67610 -10.46008 -10.19043 -9.96552 -9.53679 -9.27018 -8.81139 -8.37219 -8.10187 -7.18761 -6.00450 -4.05702 1.43514 1.95091 2.99588 3.26835 3.31914 3.39580 3.46230 4.22543 4.46496 4.89947 4.92116 5.04496 5.24609 5.31887 5.36891 5.43798 5.54561 5.61592 5.64630 5.75269 5.84737 5.90776 6.23825 6.28491 6.43245 6.77385 6.88283 6.91180 6.99077 7.17791 7.22963 7.42491 7.59188 7.65565 7.88741 8.08382 8.32327 8.56323 8.95226 9.57986 11.05661 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.006725 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.525339 B = 4162.814249 C = 4536.350056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.175 4.175 5 C -0.030 4.030 6 C -0.174 4.174 7 C 0.152 3.848 8 C 0.112 3.888 9 H 0.049 0.951 10 C -0.130 4.130 11 C -0.501 4.501 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 N -0.260 5.260 20 N -0.425 5.425 21 C 0.111 3.889 22 C 0.127 3.873 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.066 8.670 2.240 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C -0.100 4.100 4 C -0.195 4.195 5 C -0.050 4.050 6 C -0.182 4.182 7 C -0.025 4.025 8 C 0.092 3.908 9 H 0.067 0.933 10 C -0.189 4.189 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 N -0.070 5.070 20 N -0.211 5.211 21 C -0.031 4.031 22 C 0.012 3.988 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.560 7.315 2.262 14.710 hybrid contribution 0.337 0.204 -0.875 0.959 sum -12.223 7.519 1.387 14.417 Atomic orbital electron populations 1.20839 0.91764 1.02518 1.01685 1.18490 0.95180 0.90215 1.08820 1.20450 0.94269 0.96165 0.99121 1.20508 0.93817 0.97726 1.07430 1.20446 1.00004 0.90176 0.94418 1.20113 0.91913 0.94686 1.11473 1.24690 0.97044 0.88008 0.92792 1.17516 0.81443 0.96068 0.95770 0.93340 1.21759 1.04135 0.98433 0.94559 1.21044 0.96823 1.30670 1.05424 0.92389 1.24909 0.95904 0.96360 0.96688 1.69882 1.02781 1.45042 1.35270 0.86470 0.78136 0.80037 0.83013 1.19848 1.20968 1.20938 1.76780 0.91109 1.17684 1.21473 1.48246 1.05571 1.01360 1.65971 1.21743 0.78126 1.01064 1.02146 1.18688 0.94105 0.86090 0.99950 0.91837 0.91627 0.91834 0.86247 0.86209 0.85425 0.89163 0.97236 0.94762 0.92909 0.92144 0.90046 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.84 36.01 0.32 -0.92 16 2 C -0.12 -1.87 5.86 -104.83 -0.61 -2.49 16 3 C -0.08 -1.11 9.60 -39.91 -0.38 -1.49 16 4 C -0.17 -2.61 9.97 -39.95 -0.40 -3.00 16 5 C -0.03 -0.54 10.07 -39.58 -0.40 -0.94 16 6 C -0.17 -3.66 6.33 -105.20 -0.67 -4.33 16 7 C 0.15 3.65 5.88 -80.19 -0.47 3.17 16 8 C 0.11 2.91 2.74 -92.92 -0.25 2.65 16 9 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 10 C -0.13 -3.26 8.95 37.16 0.33 -2.93 16 11 C -0.50 -14.09 8.55 -34.44 -0.29 -14.39 16 12 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 15 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 N -0.26 -6.07 12.40 34.84 0.43 -5.64 16 20 N -0.43 -8.22 4.05 -65.47 -0.27 -8.49 16 21 C 0.11 1.51 10.16 59.85 0.61 2.12 16 22 C 0.13 2.42 6.79 -84.18 -0.57 1.85 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.06 0.68 5.56 -51.93 -0.29 0.39 16 26 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.87 5.75 -51.93 -0.30 0.58 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -31.24 292.18 -7.38 -38.62 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.67 Total: -1.95 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.89 Total: -19.05 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.79 Total: -38.64 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.24 -7.38 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.333 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds