Wall clock time and date at job start Mon Mar 30 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36627 * 120.06891 * 2 1 4 4 C 1.38923 * 120.81234 * 179.97438 * 3 2 1 5 5 C 1.36501 * 120.63154 * 0.06149 * 4 3 2 6 6 C 1.39910 * 119.63132 * 359.91663 * 5 4 3 7 7 C 1.45931 * 134.03402 * 180.02562 * 6 5 4 8 8 C 1.50706 * 126.10344 * 359.97438 * 7 6 5 9 9 H 1.08995 * 109.47415 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.46708 * 119.99862 * 8 7 6 11 11 C 1.50700 * 109.46871 * 239.99525 * 8 7 6 12 12 H 1.08001 * 120.00017 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99556 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00032 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99730 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47254 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47191 * 119.99885 * 15 13 11 18 18 H 1.48493 * 109.47336 * 240.00322 * 15 13 11 19 19 N 1.30236 * 107.78654 * 180.24243 * 7 6 5 20 20 N 1.39870 * 110.09311 * 359.61774 * 19 7 6 21 21 C 1.46507 * 125.45917 * 180.15197 * 20 19 7 22 22 C 1.37045 * 109.08243 * 0.39230 * 20 19 7 23 23 H 1.08999 * 109.47198 * 270.02376 * 1 2 3 24 24 H 1.08995 * 109.47140 * 30.02578 * 1 2 3 25 25 H 1.08997 * 109.46642 * 150.02264 * 1 2 3 26 26 H 1.08003 * 119.59959 * 359.97438 * 3 2 1 27 27 H 1.08004 * 119.68618 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.18369 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46792 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47539 * 299.99802 * 10 8 7 31 31 H 1.09005 * 109.47120 * 60.00102 * 10 8 7 32 32 H 0.97006 * 119.99631 * 179.97438 * 14 13 11 33 33 H 1.08994 * 109.46816 * 270.28646 * 21 20 19 34 34 H 1.09001 * 109.47060 * 30.28200 * 21 20 19 35 35 H 1.09002 * 109.47077 * 150.28617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1824 0.0000 4 6 3.5807 1.2004 0.0005 5 6 4.2914 0.0350 -0.0002 6 6 3.6132 -1.1887 0.0003 7 6 4.0392 -2.5845 0.0003 8 6 5.4630 -3.0784 -0.0009 9 1 6.1431 -2.2267 -0.0013 10 6 5.7095 -3.9266 1.2484 11 6 5.7036 -3.9146 -1.2313 12 1 4.9054 -4.0723 -1.9416 13 6 6.9427 -4.4784 -1.4502 14 7 7.9144 -4.2868 -0.5850 15 14 7.2411 -5.5143 -2.9757 16 1 5.9966 -5.5756 -3.7838 17 1 8.3263 -4.9032 -3.7845 18 1 7.6377 -6.8872 -2.5720 19 7 2.9692 -3.3270 -0.0044 20 7 1.8256 -2.5218 0.0012 21 6 0.4436 -3.0083 0.0015 22 6 2.2048 -1.2049 0.0009 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6462 2.1146 -0.0004 27 1 4.1034 2.1456 0.0001 28 1 5.3711 0.0575 -0.0002 29 1 6.7392 -4.2842 1.2473 30 1 5.5355 -3.3218 2.1384 31 1 5.0294 -4.7784 1.2492 32 1 8.7860 -4.6838 -0.7388 33 1 0.1009 -3.1292 -1.0261 34 1 0.3965 -3.9683 0.5155 35 1 -0.1946 -2.2893 0.5152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:49 Heat of formation + Delta-G solvation = 58.510956 kcal Electronic energy + Delta-G solvation = -17320.802058 eV Core-core repulsion = 14704.970894 eV Total energy + Delta-G solvation = -2615.831165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17939 -38.29598 -36.65643 -34.79484 -32.84927 -31.66273 -30.61538 -28.43545 -27.27490 -26.35484 -24.01294 -22.98949 -22.56002 -19.95710 -18.44643 -17.61327 -17.35491 -16.57315 -16.40857 -16.15941 -15.20469 -14.90148 -14.60571 -14.29198 -14.26316 -13.87068 -13.77470 -13.43905 -13.06240 -12.88818 -12.83924 -12.55491 -12.28776 -12.17470 -12.07732 -12.00075 -11.74885 -11.33517 -11.05101 -10.53484 -10.47559 -9.48923 -8.54405 -8.13096 -6.26911 0.10825 0.66485 1.38698 1.39581 1.51462 1.67143 1.69555 2.42293 2.91823 3.13483 3.66140 3.69683 3.84286 4.12044 4.29764 4.37061 4.44523 4.45425 4.59239 4.65704 4.77288 4.84649 4.88734 4.93664 5.01711 5.12395 5.12981 5.29849 5.49615 5.60003 5.63043 5.68762 5.80487 5.97736 6.06964 6.24750 6.32942 6.75728 6.93460 7.39592 8.91636 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.006725 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.525339 B = 4162.814249 C = 4536.350056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C -0.073 4.073 4 C -0.158 4.158 5 C -0.062 4.062 6 C -0.212 4.212 7 C 0.120 3.880 8 C 0.114 3.886 9 H 0.028 0.972 10 C -0.115 4.115 11 C -0.521 4.521 12 H 0.038 0.962 13 C 0.021 3.979 14 N -0.911 5.911 15 Si 0.957 3.043 16 H -0.278 1.278 17 H -0.272 1.272 18 H -0.274 1.274 19 N -0.292 5.292 20 N -0.425 5.425 21 C 0.100 3.900 22 C 0.111 3.889 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.167 0.833 27 H 0.154 0.846 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 10.667 1.874 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.177 4.177 5 C -0.083 4.083 6 C -0.220 4.220 7 C -0.057 4.057 8 C 0.094 3.906 9 H 0.046 0.954 10 C -0.174 4.174 11 C -0.559 4.559 12 H 0.056 0.944 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.783 3.217 16 H -0.203 1.203 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.105 5.105 20 N -0.213 5.213 21 C -0.040 4.040 22 C -0.005 4.005 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.184 0.816 27 H 0.172 0.828 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.846 9.318 1.903 17.630 hybrid contribution 0.938 -0.296 -0.737 1.230 sum -13.907 9.021 1.165 16.618 Atomic orbital electron populations 1.20940 0.88392 1.04103 1.03275 1.19079 0.97650 0.88895 1.06841 1.21028 0.93933 0.97580 0.96751 1.20956 0.94730 0.97683 1.04349 1.20590 1.00064 0.90701 0.96928 1.20340 0.93655 0.94223 1.13768 1.24303 0.96131 0.90066 0.95202 1.17260 0.83226 0.94960 0.95147 0.95360 1.21561 1.02461 0.98159 0.95216 1.21164 0.96738 1.31811 1.06211 0.94361 1.25628 0.95511 0.97259 0.99471 1.69974 1.03094 1.45463 1.36514 0.85521 0.77870 0.78768 0.79578 1.20314 1.19782 1.19988 1.76554 0.92498 1.19532 1.21895 1.48518 1.06010 1.01449 1.65336 1.22169 0.75879 1.02276 1.03630 1.19127 0.93579 0.87047 1.00728 0.90053 0.88901 0.91513 0.81557 0.82805 0.86279 0.90995 0.95750 0.95715 0.92479 0.90788 0.89746 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 8.84 71.24 0.63 -1.29 16 2 C -0.12 -3.27 5.86 -20.00 -0.12 -3.39 16 3 C -0.07 -1.71 9.60 22.06 0.21 -1.50 16 4 C -0.16 -4.28 9.97 22.03 0.22 -4.06 16 5 C -0.06 -2.28 10.07 22.27 0.22 -2.06 16 6 C -0.21 -9.21 6.33 -20.24 -0.13 -9.34 16 7 C 0.12 6.04 5.88 44.79 0.26 6.30 16 8 C 0.11 6.29 2.74 -12.28 -0.03 6.26 16 9 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 10 C -0.12 -6.09 8.95 71.98 0.64 -5.45 16 11 C -0.52 -30.77 8.55 25.60 0.22 -30.56 16 12 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 13 C 0.02 1.18 5.30 84.66 0.45 1.63 16 14 N -0.91 -52.90 11.32 21.45 0.24 -52.66 16 15 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 N -0.29 -14.21 12.40 -43.69 -0.54 -14.75 16 20 N -0.43 -16.39 4.05 -361.04 -1.46 -17.85 16 21 C 0.10 2.57 10.16 127.77 1.30 3.86 16 22 C 0.11 4.12 6.79 39.21 0.27 4.39 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 25 H 0.07 1.13 5.56 -2.39 -0.01 1.12 16 26 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 27 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 30 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.12 2.12 5.75 -2.39 -0.01 2.10 16 Total: -1.00 -71.62 292.18 5.49 -66.13 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.08 Total: 7.00 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 4.15 Total: -35.20 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.76 Total: -85.26 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.62 5.49 -66.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.641 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds