Wall clock time and date at job start Mon Mar 30 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46829 * 2 1 4 4 C 1.34231 * 125.04295 * 269.99261 * 3 2 1 5 5 C 1.50701 * 126.56375 * 0.05014 * 4 3 2 6 6 C 1.50702 * 109.46961 * 269.94539 * 5 4 3 7 7 H 1.07997 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99898 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00205 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99968 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46759 * 90.00147 * 10 8 6 12 12 H 1.48497 * 109.47293 * 210.00017 * 10 8 6 13 13 H 1.48493 * 109.47156 * 330.00130 * 10 8 6 14 14 C 1.46385 * 106.86595 * 180.02562 * 4 3 2 15 15 C 1.39698 * 134.31877 * 179.97438 * 14 4 3 16 16 C 1.38196 * 118.03853 * 180.02562 * 15 14 4 17 17 C 1.38658 * 119.41532 * 359.97438 * 16 15 14 18 18 N 1.31592 * 121.58140 * 0.02562 * 17 16 15 19 19 C 1.32654 * 121.66740 * 0.02562 * 18 17 16 20 20 N 1.36921 * 125.04573 * 90.02396 * 3 2 1 21 21 C 1.46503 * 124.98530 * 0.24294 * 20 3 2 22 22 H 1.09001 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47435 * 300.00373 * 1 2 3 24 24 H 1.09010 * 109.46908 * 60.00130 * 1 2 3 25 25 H 1.08994 * 109.47199 * 240.00294 * 2 1 3 26 26 H 1.09000 * 109.46743 * 119.99334 * 2 1 3 27 27 H 1.09000 * 109.47124 * 29.94561 * 5 4 3 28 28 H 1.09004 * 109.47163 * 149.94612 * 5 4 3 29 29 H 0.97000 * 119.99997 * 179.97438 * 9 8 6 30 30 H 1.07997 * 120.97696 * 0.04846 * 15 14 4 31 31 H 1.08000 * 120.29052 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.21081 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.46462 * 269.71876 * 21 20 3 34 34 H 1.08996 * 109.47035 * 29.72221 * 21 20 3 35 35 H 1.09001 * 109.46784 * 149.72691 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2893 2.1475 -1.0990 5 6 2.1300 1.6995 -2.5290 6 6 3.4165 1.0768 -3.0066 7 1 4.2646 1.0117 -2.3411 8 6 3.5110 0.5904 -4.2932 9 7 2.4784 0.6702 -5.1039 10 14 5.1060 -0.1808 -4.8855 11 1 5.0866 -1.6382 -4.6011 12 1 5.2478 0.0364 -6.3476 13 1 6.2514 0.4464 -4.1785 14 6 2.7533 3.4586 -0.6423 15 6 3.1671 4.6266 -1.2875 16 6 3.5477 5.7006 -0.5056 17 6 3.5066 5.5859 0.8756 18 7 3.1135 4.4762 1.4636 19 6 2.7378 3.4131 0.7647 20 7 2.2947 2.1620 1.1210 21 6 2.1333 1.6884 2.4979 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5137 0.8901 27 1 1.3259 0.9663 -2.5926 28 1 1.8882 2.5590 -3.1543 29 1 2.5450 0.3282 -6.0092 30 1 3.1885 4.6884 -2.3655 31 1 3.8742 6.6212 -0.9663 32 1 3.8044 6.4274 1.4835 33 1 1.1247 1.9146 2.8439 34 1 2.2966 0.6113 2.5331 35 1 2.8585 2.1872 3.1410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260807870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:56 Heat of formation + Delta-G solvation = 55.457714 kcal Electronic energy + Delta-G solvation = -17373.776789 eV Core-core repulsion = 14757.813226 eV Total energy + Delta-G solvation = -2615.963563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05788 -37.68131 -34.09344 -32.79163 -32.40213 -30.95030 -28.92004 -27.75346 -25.38689 -23.93114 -22.80594 -21.80097 -20.76425 -18.45335 -16.61426 -16.28628 -16.04113 -15.47284 -15.14958 -14.46915 -13.98174 -13.69054 -13.17601 -13.06794 -12.68326 -12.41355 -12.28106 -12.16511 -11.85228 -11.68545 -11.33766 -10.96438 -10.84718 -10.66542 -10.57791 -10.26394 -9.88146 -9.66254 -9.23186 -8.82706 -8.37396 -7.75655 -6.97502 -5.98672 -4.02645 1.57696 1.90495 3.06073 3.31234 3.35479 3.39022 3.46142 4.41892 4.50676 4.77909 5.07458 5.13061 5.30923 5.34352 5.39688 5.46273 5.62716 5.67139 5.69675 5.74246 5.78416 6.05561 6.11555 6.26495 6.36486 6.48227 6.59775 6.64139 6.85407 7.16564 7.27476 7.56621 7.60708 7.78424 7.94275 7.97534 8.41105 8.49203 9.02710 9.60892 11.09490 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.008342 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.910889 B = 3355.529722 C = 4258.923954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C 0.054 3.946 4 C -0.097 4.097 5 C 0.083 3.917 6 C -0.505 4.505 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.221 4.221 17 C 0.123 3.877 18 N -0.510 5.510 19 C 0.280 3.720 20 N -0.476 5.476 21 C 0.086 3.914 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 3.347 11.314 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.049 4.049 4 C -0.103 4.103 5 C 0.045 3.955 6 C -0.544 4.544 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.149 4.149 15 C -0.041 4.041 16 C -0.243 4.243 17 C -0.043 4.043 18 N -0.224 5.224 19 C 0.048 3.952 20 N -0.164 5.164 21 C -0.056 4.056 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.817 3.018 12.359 12.851 hybrid contribution 1.008 -0.273 -1.153 1.556 sum -0.809 2.746 11.206 11.566 Atomic orbital electron populations 1.21721 0.94993 1.01357 1.02022 1.20139 0.95673 0.89785 1.03590 1.20042 1.06234 0.94620 0.84038 1.20984 1.01904 0.90410 0.97035 1.17727 0.97247 0.96295 0.84191 1.21096 0.97977 1.38184 0.97108 0.92760 1.24981 0.96321 0.96193 0.96757 1.69952 1.29745 1.46819 1.06926 0.86620 0.84095 0.79616 0.77885 1.20683 1.21218 1.19932 1.19948 1.05823 0.96216 0.92957 1.21047 0.92161 0.90451 1.00429 1.21693 1.07677 0.99987 0.94935 1.22195 0.96159 0.93494 0.92445 1.66349 1.15893 0.99064 1.41045 1.18293 0.99994 0.87022 0.89930 1.43403 1.57790 1.09214 1.05990 1.21771 1.02176 1.00490 0.81124 0.92473 0.93646 0.91740 0.87967 0.92063 0.95213 0.95589 0.92957 0.84763 0.85383 0.83256 0.92103 0.90449 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 37.16 0.37 -1.70 16 2 C -0.05 -0.89 5.68 -27.88 -0.16 -1.05 16 3 C 0.05 1.05 6.09 -81.73 -0.50 0.55 16 4 C -0.10 -2.19 5.51 -102.76 -0.57 -2.76 16 5 C 0.08 2.12 5.05 -29.03 -0.15 1.97 16 6 C -0.51 -13.99 9.09 -34.44 -0.31 -14.30 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.14 -3.05 6.37 -105.11 -0.67 -3.72 16 15 C -0.01 -0.28 10.22 -39.05 -0.40 -0.68 16 16 C -0.22 -3.48 10.10 -39.44 -0.40 -3.88 16 17 C 0.12 1.93 11.14 -17.50 -0.20 1.73 16 18 N -0.51 -9.43 10.39 -12.27 -0.13 -9.55 16 19 C 0.28 5.63 7.90 -155.69 -1.23 4.40 16 20 N -0.48 -8.71 3.17 -119.03 -0.38 -9.08 16 21 C 0.09 1.16 10.86 59.85 0.65 1.81 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 25 H 0.10 1.90 7.66 -51.93 -0.40 1.50 16 26 H 0.06 0.85 6.90 -51.93 -0.36 0.49 16 27 H 0.03 0.78 7.70 -51.93 -0.40 0.38 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 30 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.88 6.87 -51.93 -0.36 0.52 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -31.48 299.27 -8.79 -40.27 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.86 Total: -1.20 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -3.65 Total: -16.10 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.23 Total: -43.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.48 -8.79 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.728 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds