Wall clock time and date at job start Mon Mar 30 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46829 * 2 1 4 4 C 1.34231 * 125.04295 * 269.99261 * 3 2 1 5 5 C 1.50701 * 126.56375 * 0.05014 * 4 3 2 6 6 C 1.50702 * 109.46961 * 269.94539 * 5 4 3 7 7 H 1.07997 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99898 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00205 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99968 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46759 * 90.00147 * 10 8 6 12 12 H 1.48497 * 109.47293 * 210.00017 * 10 8 6 13 13 H 1.48493 * 109.47156 * 330.00130 * 10 8 6 14 14 C 1.46385 * 106.86595 * 180.02562 * 4 3 2 15 15 C 1.39698 * 134.31877 * 179.97438 * 14 4 3 16 16 C 1.38196 * 118.03853 * 180.02562 * 15 14 4 17 17 C 1.38658 * 119.41532 * 359.97438 * 16 15 14 18 18 N 1.31592 * 121.58140 * 0.02562 * 17 16 15 19 19 C 1.32654 * 121.66740 * 0.02562 * 18 17 16 20 20 N 1.36921 * 125.04573 * 90.02396 * 3 2 1 21 21 C 1.46503 * 124.98530 * 0.24294 * 20 3 2 22 22 H 1.09001 * 109.47100 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47435 * 300.00373 * 1 2 3 24 24 H 1.09010 * 109.46908 * 60.00130 * 1 2 3 25 25 H 1.08994 * 109.47199 * 240.00294 * 2 1 3 26 26 H 1.09000 * 109.46743 * 119.99334 * 2 1 3 27 27 H 1.09000 * 109.47124 * 29.94561 * 5 4 3 28 28 H 1.09004 * 109.47163 * 149.94612 * 5 4 3 29 29 H 0.97000 * 119.99997 * 179.97438 * 9 8 6 30 30 H 1.07997 * 120.97696 * 0.04846 * 15 14 4 31 31 H 1.08000 * 120.29052 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.21081 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.46462 * 269.71876 * 21 20 3 34 34 H 1.08996 * 109.47035 * 29.72221 * 21 20 3 35 35 H 1.09001 * 109.46784 * 149.72691 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2893 2.1475 -1.0990 5 6 2.1300 1.6995 -2.5290 6 6 3.4165 1.0768 -3.0066 7 1 4.2646 1.0117 -2.3411 8 6 3.5110 0.5904 -4.2932 9 7 2.4784 0.6702 -5.1039 10 14 5.1060 -0.1808 -4.8855 11 1 5.0866 -1.6382 -4.6011 12 1 5.2478 0.0364 -6.3476 13 1 6.2514 0.4464 -4.1785 14 6 2.7533 3.4586 -0.6423 15 6 3.1671 4.6266 -1.2875 16 6 3.5477 5.7006 -0.5056 17 6 3.5066 5.5859 0.8756 18 7 3.1135 4.4762 1.4636 19 6 2.7378 3.4131 0.7647 20 7 2.2947 2.1620 1.1210 21 6 2.1333 1.6884 2.4979 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5137 0.8901 27 1 1.3259 0.9663 -2.5926 28 1 1.8882 2.5590 -3.1543 29 1 2.5450 0.3282 -6.0092 30 1 3.1885 4.6884 -2.3655 31 1 3.8742 6.6212 -0.9663 32 1 3.8044 6.4274 1.4835 33 1 1.1247 1.9146 2.8439 34 1 2.2966 0.6113 2.5331 35 1 2.8585 2.1872 3.1410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260807870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:55 Heat of formation + Delta-G solvation = 38.314445 kcal Electronic energy + Delta-G solvation = -17374.520177 eV Core-core repulsion = 14757.813226 eV Total energy + Delta-G solvation = -2616.706951 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48873 -39.05541 -35.83829 -34.36602 -33.98679 -32.36122 -30.62926 -29.18265 -26.94319 -25.38816 -24.55497 -23.18217 -22.20761 -19.96185 -18.45973 -17.98894 -17.47421 -16.81561 -16.52947 -16.41906 -15.27652 -15.01905 -14.50444 -14.42170 -14.26339 -13.99289 -13.84930 -13.51730 -13.38658 -13.28539 -12.86878 -12.63924 -12.54208 -12.19761 -12.03114 -11.78566 -11.70982 -11.54219 -10.99656 -10.56758 -10.24410 -9.13996 -8.58372 -8.09048 -6.26633 0.14900 0.52560 1.38972 1.40132 1.51077 1.71386 1.84110 2.43811 3.04203 3.14804 3.52976 3.75243 3.85100 4.08912 4.18911 4.28006 4.37768 4.40184 4.49461 4.51371 4.66744 4.80237 4.81698 4.90940 5.02752 5.06203 5.19396 5.32732 5.38423 5.44487 5.62601 5.71403 5.80499 5.95123 6.21279 6.31251 6.40535 6.84519 7.11216 7.41064 8.93832 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.008342 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.910889 B = 3355.529722 C = 4258.923954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.072 3.928 4 C -0.153 4.153 5 C 0.102 3.898 6 C -0.517 4.517 7 H 0.044 0.956 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.957 3.043 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.273 1.273 14 C -0.178 4.178 15 C -0.045 4.045 16 C -0.202 4.202 17 C 0.128 3.872 18 N -0.515 5.515 19 C 0.261 3.739 20 N -0.474 5.474 21 C 0.079 3.921 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.010 0.990 28 H -0.009 1.009 29 H 0.264 0.736 30 H 0.122 0.878 31 H 0.168 0.832 32 H 0.199 0.801 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 3.614 13.571 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.034 4.034 4 C -0.160 4.160 5 C 0.065 3.935 6 C -0.555 4.555 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.782 3.218 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.198 1.198 14 C -0.185 4.185 15 C -0.071 4.071 16 C -0.223 4.223 17 C -0.038 4.038 18 N -0.230 5.230 19 C 0.030 3.970 20 N -0.161 5.161 21 C -0.061 4.061 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.029 0.971 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.140 0.860 31 H 0.186 0.814 32 H 0.216 0.784 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.890 3.285 14.649 15.039 hybrid contribution 0.711 -0.242 -1.792 1.943 sum -0.178 3.043 12.857 13.213 Atomic orbital electron populations 1.21659 0.93263 1.02909 1.01483 1.20218 0.97081 0.87957 1.03874 1.20337 1.03729 0.95346 0.83941 1.20720 1.06452 0.92623 0.96169 1.17302 0.95791 0.94105 0.86337 1.21305 0.98415 1.38434 0.97375 0.93817 1.25806 0.99737 0.96570 0.96789 1.70070 1.31784 1.47647 1.07317 0.85570 0.79725 0.79076 0.77436 1.19429 1.20476 1.19754 1.20211 1.07356 0.96517 0.94426 1.21229 0.93976 0.91478 1.00452 1.22118 1.05133 1.00023 0.95017 1.23082 0.93966 0.93765 0.92994 1.66505 1.16185 0.99282 1.40996 1.18502 1.00913 0.88181 0.89434 1.43637 1.56659 1.08531 1.07280 1.22117 1.03545 1.01993 0.78430 0.89866 0.91914 0.94494 0.90750 0.88565 0.97138 0.99025 0.92669 0.85987 0.81426 0.78399 0.90237 0.88055 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.89 71.98 0.71 -3.09 16 2 C -0.05 -1.74 5.68 29.85 0.17 -1.57 16 3 C 0.07 2.85 6.09 40.85 0.25 3.09 16 4 C -0.15 -7.30 5.51 -18.66 -0.10 -7.40 16 5 C 0.10 5.63 5.05 29.10 0.15 5.77 16 6 C -0.52 -30.07 9.09 25.60 0.23 -29.84 16 7 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 10 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 C -0.18 -7.91 6.37 -20.18 -0.13 -8.04 16 15 C -0.04 -1.76 10.22 22.61 0.23 -1.53 16 16 C -0.20 -5.95 10.10 22.36 0.23 -5.73 16 17 C 0.13 3.61 11.14 84.83 0.95 4.55 16 18 N -0.52 -17.99 10.39 -192.74 -2.00 -19.99 16 19 C 0.26 10.38 7.90 133.93 1.06 11.44 16 20 N -0.47 -16.88 3.17 -530.51 -1.68 -18.56 16 21 C 0.08 1.90 10.86 127.77 1.39 3.29 16 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.07 2.85 7.66 -2.39 -0.02 2.83 16 26 H 0.10 2.43 6.90 -2.39 -0.02 2.41 16 27 H 0.01 0.59 7.70 -2.39 -0.02 0.58 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 32 H 0.20 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.10 1.93 6.87 -2.39 -0.02 1.92 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.89 299.27 5.29 -66.60 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.07 Total: 8.82 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.59 Total: -28.07 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.40 Total: -94.16 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.89 5.29 -66.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.913 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds