Wall clock time and date at job start Mon Mar 30 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47458 * 2 1 4 4 C 1.50704 * 109.47111 * 120.00229 * 2 1 3 5 5 C 1.38899 * 125.36700 * 305.37063 * 4 2 1 6 6 C 1.40888 * 126.98774 * 0.02562 * 5 4 2 7 7 H 1.08002 * 119.99780 * 329.35422 * 6 5 4 8 8 C 1.39763 * 120.00134 * 149.08908 * 6 5 4 9 9 N 1.31042 * 119.99816 * 341.00653 * 8 6 5 10 10 Si 1.86797 * 120.00349 * 161.01319 * 8 6 5 11 11 H 1.48496 * 109.47196 * 89.99813 * 10 8 6 12 12 H 1.48502 * 109.47219 * 209.99693 * 10 8 6 13 13 H 1.48495 * 109.46784 * 329.99693 * 10 8 6 14 14 C 1.47561 * 106.02231 * 180.25911 * 5 4 2 15 15 C 1.39255 * 134.09548 * 180.54687 * 14 5 4 16 16 C 1.38447 * 118.07520 * 179.55395 * 15 14 5 17 17 C 1.38523 * 119.28546 * 359.69958 * 16 15 14 18 18 N 1.31650 * 121.52887 * 359.97438 * 17 16 15 19 19 C 1.32703 * 121.73827 * 0.02562 * 18 17 16 20 20 N 1.35750 * 125.37362 * 125.36936 * 4 2 1 21 21 C 1.46505 * 124.62917 * 359.97438 * 20 4 2 22 22 H 1.08996 * 109.47047 * 300.00152 * 1 2 3 23 23 H 1.09005 * 109.46758 * 59.99905 * 1 2 3 24 24 H 1.08996 * 109.47565 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46997 * 239.99748 * 2 1 3 26 26 H 1.09008 * 109.47452 * 180.65766 * 3 2 1 27 27 H 1.08997 * 109.47216 * 300.66107 * 3 2 1 28 28 H 1.08999 * 109.47509 * 60.66262 * 3 2 1 29 29 H 0.96994 * 120.00065 * 184.63061 * 9 8 6 30 30 H 1.08001 * 120.96509 * 359.24814 * 15 14 5 31 31 H 1.07998 * 120.36082 * 179.67284 * 16 15 14 32 32 H 1.07991 * 119.23439 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47331 * 84.63632 * 21 20 4 34 34 H 1.08999 * 109.47571 * 204.64315 * 21 20 4 35 35 H 1.09001 * 109.46634 * 324.64043 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6821 -0.3989 2.5380 6 6 0.8067 0.6206 2.9610 7 1 0.7149 1.5280 2.3825 8 6 0.0529 0.4555 4.1263 9 7 -0.1372 -0.7437 4.6193 10 14 -0.6839 1.9442 4.9810 11 1 -2.0407 2.2060 4.4372 12 1 -0.7775 1.6816 6.4396 13 1 0.1807 3.1283 4.7456 14 6 2.4179 -1.3492 3.3941 15 6 2.4883 -1.5611 4.7687 16 6 3.3023 -2.5816 5.2298 17 6 4.0055 -3.3519 4.3182 18 7 3.9177 -3.1366 3.0224 19 6 3.1531 -2.1726 2.5252 20 7 2.8984 -1.7558 1.2358 21 6 3.4823 -2.3594 0.0353 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0118 27 1 1.6671 1.9597 -0.8840 28 1 1.6865 1.9529 0.8958 29 1 -0.7151 -0.8658 5.3886 30 1 1.9280 -0.9439 5.4554 31 1 3.3884 -2.7749 6.2889 32 1 4.6398 -4.1480 4.6788 33 1 4.3657 -1.7945 -0.2624 34 1 3.7648 -3.3905 0.2476 35 1 2.7507 -2.3421 -0.7725 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260834979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:44 Heat of formation + Delta-G solvation = 42.070458 kcal Electronic energy + Delta-G solvation = -17923.214106 eV Core-core repulsion = 15306.670028 eV Total energy + Delta-G solvation = -2616.544078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -41.85378 -38.71816 -35.99878 -35.21201 -33.18083 -31.91541 -29.50835 -28.34680 -27.77455 -25.83083 -24.19985 -22.69210 -22.03290 -19.90544 -18.61761 -17.78209 -17.04543 -16.45539 -16.35494 -16.10375 -15.23333 -14.78958 -14.42456 -14.11207 -14.01506 -13.79631 -13.71279 -13.36252 -13.13135 -12.85746 -12.81228 -12.55710 -12.35380 -12.12230 -11.90458 -11.87341 -11.62054 -11.16799 -10.72330 -10.64374 -9.95037 -8.78457 -8.52335 -8.21283 -5.88067 0.55756 0.84077 1.38810 1.45290 1.55656 2.15885 2.22753 2.36354 3.21350 3.58088 3.84108 4.15275 4.17229 4.25191 4.38315 4.48172 4.57958 4.61479 4.67917 4.73712 4.79964 4.95617 4.97696 5.11058 5.17153 5.26097 5.31660 5.39211 5.54042 5.62855 5.74912 5.79107 6.01433 6.29766 6.45394 6.75753 6.81585 7.21971 7.24289 7.49033 8.64241 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.012726 C = 0.007855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.060636 B = 2199.734195 C = 3563.954127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 C -0.134 4.134 4 C -0.095 4.095 5 C 0.041 3.959 6 C -0.469 4.469 7 H 0.082 0.918 8 C 0.039 3.961 9 N -0.845 5.845 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.263 1.263 14 C -0.180 4.180 15 C 0.000 4.000 16 C -0.251 4.251 17 C 0.116 3.884 18 N -0.536 5.536 19 C 0.243 3.757 20 N -0.466 5.466 21 C 0.087 3.913 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.276 0.724 30 H 0.113 0.887 31 H 0.147 0.853 32 H 0.184 0.816 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 0.431 -4.359 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.011 4.011 3 C -0.192 4.192 4 C -0.198 4.198 5 C 0.035 3.965 6 C -0.501 4.501 7 H 0.099 0.901 8 C -0.172 4.172 9 N -0.474 5.474 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.189 4.189 15 C -0.026 4.026 16 C -0.273 4.273 17 C -0.049 4.049 18 N -0.252 5.252 19 C 0.010 3.990 20 N -0.154 5.154 21 C -0.055 4.055 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.165 0.835 32 H 0.200 0.800 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.517 -0.246 -5.146 6.238 hybrid contribution -0.928 0.789 1.325 1.799 sum 2.589 0.543 -3.822 4.648 Atomic orbital electron populations 1.21726 0.94754 1.00581 1.02175 1.19237 0.95390 0.94840 0.91586 1.21777 0.99923 0.95459 1.02006 1.20841 1.05661 0.97101 0.96205 1.18045 0.95366 0.94431 0.88676 1.18727 1.21796 1.02081 1.07504 0.90051 1.26363 0.95968 0.98222 0.96627 1.70021 1.31512 1.23698 1.22186 0.85558 0.78901 0.79670 0.77718 1.19276 1.20270 1.18674 1.20303 1.02208 1.02321 0.94053 1.21096 0.92583 0.94898 0.94052 1.21935 1.03729 1.00165 1.01499 1.22680 0.97519 0.98429 0.86294 1.66382 1.21943 1.19873 1.16970 1.18652 0.98338 0.95748 0.86268 1.42990 1.40439 1.28944 1.02986 1.21844 0.98922 0.98702 0.86004 0.92487 0.90989 0.95098 0.90960 0.93933 0.90640 0.93313 0.91438 0.86940 0.83477 0.79954 0.91404 0.90658 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 8.99 71.98 0.65 -4.27 16 2 C 0.01 0.32 3.02 -11.54 -0.03 0.29 16 3 C -0.13 -4.49 9.09 71.98 0.65 -3.83 16 4 C -0.09 -4.38 5.70 42.11 0.24 -4.14 16 5 C 0.04 2.17 5.55 -20.01 -0.11 2.06 16 6 C -0.47 -24.34 6.98 23.29 0.16 -24.18 16 7 H 0.08 4.05 5.52 -2.91 -0.02 4.03 16 8 C 0.04 1.99 4.95 85.18 0.42 2.41 16 9 N -0.84 -44.85 10.29 21.81 0.22 -44.62 16 10 Si 0.96 39.11 29.60 68.60 2.03 41.14 16 11 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 14 C -0.18 -9.59 5.80 -20.03 -0.12 -9.71 16 15 C 0.00 -0.01 8.85 22.56 0.20 0.19 16 16 C -0.25 -10.24 10.11 22.39 0.23 -10.02 16 17 C 0.12 4.57 11.15 84.79 0.94 5.51 16 18 N -0.54 -24.31 10.39 -192.68 -2.00 -26.31 16 19 C 0.24 12.07 7.84 133.68 1.05 13.11 16 20 N -0.47 -20.94 3.14 -527.22 -1.66 -22.60 16 21 C 0.09 2.89 10.59 127.77 1.35 4.25 16 22 H 0.06 2.39 5.79 -2.39 -0.01 2.37 16 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 2.30 6.62 -2.38 -0.02 2.29 16 26 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.84 5.83 -2.39 -0.01 1.83 16 29 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 30 H 0.11 5.75 6.40 -2.91 -0.02 5.73 16 31 H 0.15 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.18 5.32 8.06 -2.92 -0.02 5.30 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 35 H 0.09 2.53 7.05 -2.39 -0.02 2.51 16 Total: -1.00 -63.41 283.80 5.32 -58.09 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.09 Total: 22.63 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.64 Total: -28.32 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.43 Total: -93.53 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -63.41 5.32 -58.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260834979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.156 kcal (2) G-P(sol) polarization free energy of solvation -63.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds