Wall clock time and date at job start Mon Mar 30 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37900 * 120.15818 * 2 1 4 4 C 1.38727 * 120.45249 * 179.74646 * 3 2 1 5 5 C 1.36642 * 120.67137 * 0.56674 * 4 3 2 6 6 C 1.39702 * 119.88260 * 359.43317 * 5 4 3 7 7 N 1.35793 * 133.60536 * 180.27485 * 6 5 4 8 8 C 1.30103 * 109.64372 * 180.02562 * 7 6 5 9 9 C 1.50708 * 124.94287 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46922 * 270.04394 * 9 8 7 11 11 C 1.50698 * 109.46918 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99913 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00009 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99857 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47229 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46992 * 119.99823 * 15 13 11 18 18 H 1.48500 * 109.47076 * 239.99694 * 15 13 11 19 19 N 1.36040 * 110.11167 * 0.02562 * 8 7 6 20 20 C 1.46496 * 126.34558 * 180.02562 * 19 8 7 21 21 C 1.38061 * 107.30236 * 359.97438 * 19 8 7 22 22 H 1.08996 * 109.46664 * 269.97469 * 1 2 3 23 23 H 1.08999 * 109.47155 * 29.97680 * 1 2 3 24 24 H 1.09000 * 109.47025 * 149.97576 * 1 2 3 25 25 H 1.08001 * 119.77025 * 0.02562 * 3 2 1 26 26 H 1.08003 * 119.66828 * 180.30108 * 4 3 2 27 27 H 1.08002 * 120.06256 * 179.72022 * 5 4 3 28 28 H 1.08993 * 109.47281 * 30.04086 * 9 8 7 29 29 H 1.09000 * 109.47005 * 150.04563 * 9 8 7 30 30 H 1.08997 * 109.47326 * 300.00094 * 10 9 8 31 31 H 1.09000 * 109.47142 * 60.00254 * 10 9 8 32 32 H 0.96996 * 120.00419 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.47563 * 269.96966 * 20 19 8 34 34 H 1.08996 * 109.47466 * 29.97450 * 20 19 8 35 35 H 1.09007 * 109.47114 * 149.97194 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1923 0.0000 4 6 3.5870 1.1995 0.0053 5 6 4.2901 0.0278 -0.0010 6 6 3.6096 -1.1923 -0.0010 7 7 4.0122 -2.4891 -0.0015 8 6 2.9716 -3.2701 -0.0017 9 6 3.0228 -4.7763 -0.0028 10 6 3.0407 -5.2849 -1.4457 11 6 3.0925 -6.7910 -1.4468 12 1 3.1105 -7.3314 -0.5120 13 6 3.1171 -7.4790 -2.6415 14 7 3.0948 -6.8210 -3.7799 15 14 3.1806 -9.3460 -2.6429 16 1 3.1967 -9.8418 -1.2431 17 1 1.9863 -9.8813 -3.3444 18 1 4.4098 -9.7989 -3.3422 19 7 1.8307 -2.5292 -0.0019 20 6 0.4599 -3.0459 -0.0016 21 6 2.2042 -1.2001 -0.0012 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6586 2.1270 0.0004 26 1 4.1168 2.1406 0.0102 27 1 5.3700 0.0449 -0.0014 28 1 3.9244 -5.1096 0.5110 29 1 2.1455 -5.1700 0.5103 30 1 2.1392 -4.9516 -1.9597 31 1 3.9181 -4.8912 -1.9589 32 1 3.1117 -7.3050 -4.6203 33 1 0.1196 -3.1740 -1.0292 34 1 0.4339 -4.0069 0.5121 35 1 -0.1939 -2.3413 0.5125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:32 Heat of formation + Delta-G solvation = 53.944830 kcal Electronic energy + Delta-G solvation = -16968.367394 eV Core-core repulsion = 14352.338227 eV Total energy + Delta-G solvation = -2616.029167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85801 -37.46709 -34.47077 -33.88082 -31.64454 -31.54348 -28.54898 -27.81931 -25.89100 -25.26656 -22.14587 -21.95381 -20.43726 -19.28796 -17.07091 -16.61572 -16.24406 -15.52870 -15.06671 -14.49592 -14.22373 -13.49667 -13.45463 -13.16437 -13.07748 -12.93059 -12.72680 -12.26472 -12.05488 -11.50331 -11.34932 -11.20056 -11.00139 -10.94014 -10.60964 -10.05344 -9.95733 -9.67652 -9.49194 -9.21303 -8.42544 -7.91855 -7.67389 -6.06426 -4.10716 1.21211 1.76755 2.95104 3.16762 3.28000 3.35953 3.39496 4.12330 4.39985 4.58177 4.81033 4.89451 4.98685 5.10350 5.27759 5.29724 5.33689 5.51004 5.56172 5.60635 5.67247 5.82015 5.84230 6.02238 6.14209 6.36986 6.41647 6.68479 6.72491 6.76201 6.83128 7.16205 7.50684 7.55570 7.67911 7.91053 8.28372 8.38775 8.95714 9.53987 11.04741 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.005067 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.571218 B = 5524.126917 C = 5843.603178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.120 4.120 4 C -0.130 4.130 5 C -0.075 4.075 6 C 0.056 3.944 7 N -0.505 5.505 8 C 0.316 3.684 9 C -0.043 4.043 10 C 0.032 3.968 11 C -0.524 4.524 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 N -0.491 5.491 20 C 0.074 3.926 21 C 0.039 3.961 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 13.336 8.233 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.151 4.151 5 C -0.094 4.094 6 C -0.064 4.064 7 N -0.224 5.224 8 C 0.051 3.949 9 C -0.082 4.082 10 C -0.006 4.006 11 C -0.562 4.562 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 N -0.180 5.180 20 C -0.068 4.068 21 C -0.070 4.070 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.350 13.004 8.050 16.203 hybrid contribution -0.823 -0.753 -0.254 1.144 sum -6.173 12.251 7.797 15.779 Atomic orbital electron populations 1.20892 0.91631 1.02909 1.01966 1.18728 0.95184 0.89962 1.03987 1.20622 0.94104 0.96088 1.03203 1.20500 0.93941 0.97394 1.03229 1.19953 0.99673 0.89179 1.00630 1.19184 0.90058 0.92677 1.04438 1.70538 1.28150 0.99509 1.24226 1.24434 0.79500 0.96919 0.94031 1.20618 1.03012 0.81153 1.03429 1.19066 0.97995 0.95935 0.87625 1.21178 1.51339 0.91086 0.92601 0.92224 1.25017 0.95066 0.98627 0.95560 1.69980 1.50232 1.35517 0.97349 0.86496 0.77650 0.85457 0.78172 1.19610 1.21021 1.20909 1.45217 1.07809 1.04321 1.60650 1.22131 0.79954 1.00906 1.03818 1.18717 0.95535 0.84860 1.07922 0.91470 0.91290 0.91603 0.85914 0.85873 0.85753 0.89215 0.91027 0.96662 0.95551 0.92900 0.90524 0.89107 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.94 36.00 0.32 -0.92 16 2 C -0.08 -1.07 5.89 -104.54 -0.62 -1.69 16 3 C -0.12 -1.52 9.69 -39.52 -0.38 -1.90 16 4 C -0.13 -1.69 9.96 -39.98 -0.40 -2.09 16 5 C -0.07 -1.19 10.05 -39.61 -0.40 -1.59 16 6 C 0.06 1.07 7.23 -84.70 -0.61 0.46 16 7 N -0.51 -10.94 11.27 -8.23 -0.09 -11.03 16 8 C 0.32 6.43 7.11 -154.82 -1.10 5.32 16 9 C -0.04 -0.89 5.45 -27.88 -0.15 -1.04 16 10 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 11 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 N -0.49 -8.62 3.21 -118.50 -0.38 -9.00 16 20 C 0.07 0.98 9.74 59.84 0.58 1.56 16 21 C 0.04 0.68 6.77 -83.99 -0.57 0.11 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 24 H 0.07 0.70 5.66 -51.93 -0.29 0.40 16 25 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.07 1.30 7.01 -51.93 -0.36 0.94 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.11 6.99 -51.93 -0.36 0.75 16 35 H 0.08 0.86 5.91 -51.93 -0.31 0.55 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -32.62 293.57 -8.88 -41.49 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.67 Total: -2.01 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.87 Total: -14.18 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.26 Total: -45.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.62 -8.88 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.437 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds