Wall clock time and date at job start Mon Mar 30 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47420 * 2 1 4 4 C 1.36914 * 124.98863 * 265.28376 * 3 2 1 5 5 C 1.34227 * 109.91438 * 180.13907 * 4 3 2 6 6 C 1.50700 * 126.56472 * 179.89387 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68152 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46381 * 106.86578 * 359.62754 * 5 4 3 16 16 C 1.39692 * 134.31448 * 180.19115 * 15 5 4 17 17 C 1.38200 * 118.04193 * 179.97438 * 16 15 5 18 18 C 1.50695 * 120.29572 * 180.02562 * 17 16 15 19 19 C 1.38668 * 119.40645 * 0.07293 * 17 16 15 20 20 N 1.31589 * 121.58518 * 359.93558 * 19 17 16 21 21 C 1.32655 * 121.67069 * 0.02562 * 20 19 17 22 22 H 1.09003 * 109.46993 * 300.00185 * 1 2 3 23 23 H 1.09001 * 109.47412 * 59.99660 * 1 2 3 24 24 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46590 * 239.99540 * 2 1 3 26 26 H 1.09007 * 109.46864 * 119.99893 * 2 1 3 27 27 H 1.08001 * 125.03951 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 144.68445 * 6 5 4 29 29 H 1.08994 * 109.47551 * 24.68098 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.98069 * 0.02562 * 16 15 5 32 32 H 1.09005 * 109.47103 * 270.04354 * 18 17 16 33 33 H 1.08990 * 109.47335 * 30.04950 * 18 17 16 34 34 H 1.09004 * 109.46776 * 150.04978 * 18 17 16 35 35 H 1.08003 * 119.20852 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3671 2.0906 -1.1179 5 6 2.7750 3.3211 -0.7697 6 6 3.2445 4.4084 -1.7016 7 6 4.7485 4.3773 -1.7923 8 1 5.3083 3.6433 -1.2317 9 6 5.4095 5.2819 -2.5960 10 7 4.7278 6.1755 -3.2790 11 14 7.2732 5.2384 -2.7145 12 1 7.7055 3.9155 -3.2326 13 1 7.7356 6.3068 -3.6365 14 1 7.8601 5.4587 -1.3683 15 6 2.6703 3.4067 0.6878 16 6 2.9364 4.4046 1.6284 17 6 2.7109 4.1178 2.9614 18 6 2.9802 5.1572 4.0187 19 6 2.2354 2.8647 3.3172 20 7 1.9913 1.9384 2.4151 21 6 2.1882 2.1570 1.1215 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 2.3231 1.7148 -2.1295 28 1 2.9235 5.3777 -1.3199 29 1 2.8174 4.2481 -2.6915 30 1 5.1928 6.8121 -3.8441 31 1 3.3067 5.3720 1.3229 32 1 4.0105 5.0668 4.3630 33 1 2.8230 6.1510 3.5997 34 1 2.3020 5.0054 4.8585 35 1 2.0606 2.6439 4.3599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260856691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:08 Heat of formation + Delta-G solvation = 54.486323 kcal Electronic energy + Delta-G solvation = -17041.243287 eV Core-core repulsion = 14425.237602 eV Total energy + Delta-G solvation = -2616.005686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00444 -37.74972 -34.38031 -32.86360 -32.70713 -30.07185 -29.58379 -26.83399 -26.17468 -23.65904 -22.92049 -22.15679 -20.60863 -18.70562 -16.77841 -16.23180 -16.16948 -15.24086 -14.84763 -14.48177 -14.05444 -13.71679 -13.41482 -12.82481 -12.53109 -12.46729 -12.29342 -12.24654 -12.02131 -11.85458 -11.55755 -11.15629 -10.97397 -10.94198 -10.67834 -10.39334 -9.82243 -9.59949 -9.20747 -8.81511 -8.37126 -7.69959 -7.03755 -5.98611 -4.02410 1.59425 1.86804 3.07701 3.33859 3.37361 3.38809 3.48902 4.38434 4.50140 4.71770 4.89711 5.18042 5.21999 5.28205 5.34480 5.36036 5.45996 5.55810 5.66345 5.72351 5.82911 5.86138 6.09068 6.13552 6.15609 6.30605 6.38118 6.67315 6.88863 7.15346 7.21699 7.54957 7.61167 7.78075 7.93040 7.97188 8.40948 8.49569 9.02617 9.61038 11.10033 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.007455 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.055514 B = 3754.719065 C = 4784.611273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.477 5.477 4 C 0.019 3.981 5 C -0.099 4.099 6 C 0.081 3.919 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.139 4.139 16 C -0.013 4.013 17 C -0.190 4.190 18 C -0.096 4.096 19 C 0.127 3.873 20 N -0.506 5.506 21 C 0.278 3.722 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -7.641 9.409 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.165 5.165 4 C -0.102 4.102 5 C -0.105 4.105 6 C 0.044 3.956 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.147 4.147 16 C -0.039 4.039 17 C -0.195 4.195 18 C -0.153 4.153 19 C -0.039 4.039 20 N -0.219 5.219 21 C 0.046 3.954 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.185 0.815 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.915 -8.679 9.404 14.546 hybrid contribution 1.385 0.695 -0.424 1.607 sum -5.530 -7.984 8.980 13.227 Atomic orbital electron populations 1.22152 0.95289 1.02142 1.02924 1.21592 0.94868 0.80925 1.03452 1.43674 1.57509 1.11646 1.03685 1.21589 1.05985 0.92457 0.90170 1.21189 1.01301 0.96474 0.91538 1.17724 0.95532 0.90428 0.91958 1.21077 0.91159 1.15900 1.26459 0.92741 1.24990 0.98242 0.95451 0.95610 1.69945 1.35483 1.18925 1.29196 0.86653 0.85794 0.77608 0.77948 1.20293 1.21264 1.20246 1.19941 1.05245 0.94306 0.95199 1.20929 0.93570 0.98600 0.90759 1.20473 1.06654 0.97339 0.94987 1.20533 1.01398 0.96973 0.96436 1.22095 0.96237 0.88406 0.97152 1.66361 1.20884 1.35264 0.99402 1.18355 1.00439 0.89662 0.86956 0.92033 0.92135 0.91413 0.89716 0.89940 0.81520 0.95427 0.95409 0.92880 0.84774 0.91801 0.91779 0.92061 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.11 1.50 6.77 -4.04 -0.03 1.48 16 3 N -0.48 -8.48 2.77 -116.26 -0.32 -8.81 16 4 C 0.02 0.37 11.20 -16.70 -0.19 0.18 16 5 C -0.10 -2.21 5.51 -102.76 -0.57 -2.78 16 6 C 0.08 2.10 5.51 -29.03 -0.16 1.94 16 7 C -0.51 -14.27 9.09 -34.44 -0.31 -14.58 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 11 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.14 -2.98 6.37 -105.11 -0.67 -3.65 16 16 C -0.01 -0.24 9.90 -39.05 -0.39 -0.63 16 17 C -0.19 -3.06 5.90 -104.48 -0.62 -3.68 16 18 C -0.10 -1.16 10.03 36.00 0.36 -0.79 16 19 C 0.13 2.02 10.82 -17.50 -0.19 1.83 16 20 N -0.51 -9.27 10.39 -12.27 -0.13 -9.40 16 21 C 0.28 5.50 7.91 -155.69 -1.23 4.27 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -31.67 303.51 -8.89 -40.56 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.03 Total: -1.47 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.70 Total: -16.44 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.29 Total: -43.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.67 -8.89 -40.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.046 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds