Wall clock time and date at job start Mon Mar 30 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47420 * 2 1 4 4 C 1.36914 * 124.98863 * 265.28376 * 3 2 1 5 5 C 1.34227 * 109.91438 * 180.13907 * 4 3 2 6 6 C 1.50700 * 126.56472 * 179.89387 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68152 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46381 * 106.86578 * 359.62754 * 5 4 3 16 16 C 1.39692 * 134.31448 * 180.19115 * 15 5 4 17 17 C 1.38200 * 118.04193 * 179.97438 * 16 15 5 18 18 C 1.50695 * 120.29572 * 180.02562 * 17 16 15 19 19 C 1.38668 * 119.40645 * 0.07293 * 17 16 15 20 20 N 1.31589 * 121.58518 * 359.93558 * 19 17 16 21 21 C 1.32655 * 121.67069 * 0.02562 * 20 19 17 22 22 H 1.09003 * 109.46993 * 300.00185 * 1 2 3 23 23 H 1.09001 * 109.47412 * 59.99660 * 1 2 3 24 24 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46590 * 239.99540 * 2 1 3 26 26 H 1.09007 * 109.46864 * 119.99893 * 2 1 3 27 27 H 1.08001 * 125.03951 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 144.68445 * 6 5 4 29 29 H 1.08994 * 109.47551 * 24.68098 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.98069 * 0.02562 * 16 15 5 32 32 H 1.09005 * 109.47103 * 270.04354 * 18 17 16 33 33 H 1.08990 * 109.47335 * 30.04950 * 18 17 16 34 34 H 1.09004 * 109.46776 * 150.04978 * 18 17 16 35 35 H 1.08003 * 119.20852 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3671 2.0906 -1.1179 5 6 2.7750 3.3211 -0.7697 6 6 3.2445 4.4084 -1.7016 7 6 4.7485 4.3773 -1.7923 8 1 5.3083 3.6433 -1.2317 9 6 5.4095 5.2819 -2.5960 10 7 4.7278 6.1755 -3.2790 11 14 7.2732 5.2384 -2.7145 12 1 7.7055 3.9155 -3.2326 13 1 7.7356 6.3068 -3.6365 14 1 7.8601 5.4587 -1.3683 15 6 2.6703 3.4067 0.6878 16 6 2.9364 4.4046 1.6284 17 6 2.7109 4.1178 2.9614 18 6 2.9802 5.1572 4.0187 19 6 2.2354 2.8647 3.3172 20 7 1.9913 1.9384 2.4151 21 6 2.1882 2.1570 1.1215 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 2.3231 1.7148 -2.1295 28 1 2.9235 5.3777 -1.3199 29 1 2.8174 4.2481 -2.6915 30 1 5.1928 6.8121 -3.8441 31 1 3.3067 5.3720 1.3229 32 1 4.0105 5.0668 4.3630 33 1 2.8230 6.1510 3.5997 34 1 2.3020 5.0054 4.8585 35 1 2.0606 2.6439 4.3599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:06 Heat of formation + Delta-G solvation = 37.678789 kcal Electronic energy + Delta-G solvation = -17041.972117 eV Core-core repulsion = 14425.237602 eV Total energy + Delta-G solvation = -2616.734515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.43009 -39.10119 -36.00055 -34.58791 -34.07844 -31.62938 -31.04709 -28.49744 -27.42593 -25.34007 -24.43309 -23.53555 -21.93570 -20.27760 -18.48261 -18.07461 -17.55653 -16.63146 -16.45248 -16.19788 -15.19534 -14.93099 -14.52433 -14.40578 -14.16741 -13.99848 -13.85677 -13.48213 -13.46971 -13.08464 -12.91086 -12.69235 -12.59498 -12.28704 -12.25039 -12.08387 -11.72279 -11.51890 -10.87010 -10.58241 -10.23804 -9.08736 -8.62342 -8.11603 -6.28582 0.14735 0.48997 1.38909 1.41513 1.49681 1.74450 1.88403 2.43463 2.99279 3.13474 3.47860 3.76705 3.92047 4.01904 4.17572 4.19522 4.28047 4.37555 4.44877 4.69158 4.76365 4.81638 4.90551 4.93648 4.97970 5.08391 5.20337 5.23768 5.35786 5.48738 5.59588 5.72926 5.78963 5.89195 6.19893 6.29146 6.39842 6.82802 7.10476 7.39335 8.92403 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.007455 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.055514 B = 3754.719065 C = 4784.611273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.472 5.472 4 C 0.042 3.958 5 C -0.151 4.151 6 C 0.097 3.903 7 C -0.523 4.523 8 H 0.046 0.954 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.272 1.272 15 C -0.172 4.172 16 C -0.045 4.045 17 C -0.175 4.175 18 C -0.094 4.094 19 C 0.130 3.870 20 N -0.510 5.510 21 C 0.261 3.739 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.192 0.808 28 H -0.005 1.005 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 -9.388 11.147 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.159 5.159 4 C -0.081 4.081 5 C -0.158 4.158 6 C 0.059 3.941 7 C -0.561 4.561 8 H 0.064 0.936 9 C -0.190 4.190 10 N -0.570 5.570 11 Si 0.784 3.216 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.197 1.197 15 C -0.179 4.179 16 C -0.072 4.072 17 C -0.179 4.179 18 C -0.151 4.151 19 C -0.036 4.036 20 N -0.223 5.223 21 C 0.029 3.971 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.208 0.792 28 H 0.013 0.987 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.708 -10.456 11.156 16.697 hybrid contribution 1.247 1.223 -0.862 1.948 sum -5.461 -9.233 10.294 14.868 Atomic orbital electron populations 1.22089 0.93886 1.03899 1.01732 1.21979 0.95977 0.78490 1.05006 1.43940 1.56482 1.12921 1.02575 1.21818 1.03265 0.91498 0.91534 1.20877 1.05467 0.97273 0.92166 1.17339 0.94591 0.90464 0.91686 1.21338 0.92470 1.15862 1.26416 0.93561 1.25845 1.03249 0.94884 0.95068 1.70066 1.37506 1.19592 1.29817 0.85589 0.79729 0.78103 0.78164 1.19314 1.20345 1.19740 1.20170 1.06819 0.96041 0.94913 1.21066 0.95590 0.98051 0.92452 1.20914 1.04154 0.98479 0.94355 1.20636 1.02939 0.95535 0.96034 1.22922 0.94312 0.87667 0.98712 1.66502 1.20984 1.35969 0.98821 1.18534 1.01157 0.89461 0.87940 0.93935 0.92554 0.88131 0.87094 0.89453 0.79156 0.98654 0.97299 0.92607 0.86363 0.90559 0.91858 0.88817 0.78779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.24 71.98 0.74 -2.58 16 2 C 0.11 2.55 6.77 86.38 0.58 3.14 16 3 N -0.47 -16.45 2.77 -521.75 -1.45 -17.90 16 4 C 0.04 1.64 11.20 82.98 0.93 2.57 16 5 C -0.15 -7.12 5.51 -18.66 -0.10 -7.23 16 6 C 0.10 5.34 5.51 29.10 0.16 5.50 16 7 C -0.52 -30.62 9.09 25.60 0.23 -30.39 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 11 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 15 C -0.17 -7.63 6.37 -20.18 -0.13 -7.76 16 16 C -0.05 -1.81 9.90 22.61 0.22 -1.59 16 17 C -0.18 -5.41 5.90 -19.77 -0.12 -5.53 16 18 C -0.09 -2.03 10.03 71.23 0.71 -1.31 16 19 C 0.13 3.79 10.82 84.83 0.92 4.71 16 20 N -0.51 -17.84 10.39 -192.73 -2.00 -19.84 16 21 C 0.26 10.26 7.91 133.93 1.06 11.32 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.11 2.12 8.12 -2.39 -0.02 2.10 16 26 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.19 6.24 8.06 -2.91 -0.02 6.21 16 28 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 31 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.09 1.44 8.09 -2.38 -0.02 1.42 16 35 H 0.20 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -71.59 303.51 5.60 -65.99 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.06 Total: 9.15 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 5.67 Total: -28.25 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -3.16 Total: -93.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.59 5.60 -65.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.672 kcal (2) G-P(sol) polarization free energy of solvation -71.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds