Wall clock time and date at job start Mon Mar 30 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.50705 * 109.47099 * 119.99884 * 2 1 3 5 5 N 1.36635 * 125.02723 * 300.02836 * 4 2 1 6 6 H 0.96994 * 125.09543 * 359.97438 * 5 4 2 7 7 C 1.37623 * 109.80475 * 179.97438 * 5 4 2 8 8 C 1.39196 * 133.71280 * 179.97438 * 7 5 4 9 9 C 1.38306 * 118.28605 * 180.02562 * 8 7 5 10 10 C 1.38685 * 119.67570 * 359.97438 * 9 8 7 11 11 N 1.31534 * 121.27498 * 0.26431 * 10 9 8 12 12 C 1.32996 * 121.40002 * 359.47426 * 11 10 9 13 13 C 1.34363 * 125.02577 * 119.99949 * 4 2 1 14 14 C 1.50703 * 126.45663 * 0.04332 * 13 4 2 15 15 C 1.50704 * 109.46874 * 269.99642 * 14 13 4 16 16 H 1.07999 * 120.00331 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99521 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00491 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47172 * 60.00080 * 19 17 15 21 21 H 1.48500 * 109.47007 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47445 * 299.99847 * 19 17 15 23 23 H 1.09003 * 109.46978 * 59.99860 * 1 2 3 24 24 H 1.08996 * 109.47659 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47334 * 299.99988 * 1 2 3 26 26 H 1.08997 * 109.47334 * 240.00012 * 2 1 3 27 27 H 1.09004 * 109.47139 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47468 * 300.00391 * 3 2 1 29 29 H 1.09007 * 109.46888 * 59.99868 * 3 2 1 30 30 H 1.07991 * 120.85735 * 0.02562 * 8 7 5 31 31 H 1.08000 * 120.16147 * 179.97438 * 9 8 7 32 32 H 1.08002 * 119.35959 * 179.97438 * 10 9 8 33 33 H 1.08989 * 109.47498 * 29.99950 * 14 13 4 34 34 H 1.09002 * 109.46828 * 150.00076 * 14 13 4 35 35 H 0.96993 * 120.00427 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7658 -0.3345 2.5168 6 1 1.2258 0.4290 2.7742 7 6 2.3785 -1.2016 3.3925 8 6 2.4372 -1.2849 4.7807 9 6 3.1663 -2.3158 5.3452 10 6 3.8119 -3.2293 4.5254 11 7 3.7501 -3.1336 3.2150 12 6 3.0584 -2.1642 2.6228 13 6 2.8080 -1.8075 1.2249 14 6 3.3229 -2.5340 0.0091 15 6 2.3344 -3.5966 -0.3971 16 1 1.4242 -3.7319 0.1683 17 6 2.5920 -4.3959 -1.4906 18 7 3.7006 -4.2315 -2.1788 19 14 1.3665 -5.7125 -1.9946 20 1 0.0618 -5.0785 -2.3131 21 1 1.8739 -6.4284 -3.1926 22 1 1.1891 -6.6767 -0.8793 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.9267 -0.5632 5.4010 31 1 3.2325 -2.4089 6.4191 32 1 4.3801 -4.0320 4.9716 33 1 3.4523 -1.8262 -0.8094 34 1 4.2808 -2.9990 0.2423 35 1 3.8817 -4.7935 -2.9483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260913564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:26 Heat of formation + Delta-G solvation = 45.095273 kcal Electronic energy + Delta-G solvation = -17324.857609 eV Core-core repulsion = 14708.444697 eV Total energy + Delta-G solvation = -2616.412912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 6.51 seconds Orbital eigenvalues (eV) -41.07764 -37.74254 -34.49049 -33.42310 -32.09155 -30.31863 -28.68588 -26.92364 -26.70760 -23.46755 -22.93972 -22.29315 -20.26112 -18.36677 -17.24882 -16.19710 -16.06580 -15.47352 -14.44812 -14.41277 -14.40562 -14.02850 -13.27140 -12.96193 -12.81230 -12.22628 -12.15331 -12.10274 -11.75962 -11.65623 -11.26775 -10.88632 -10.81380 -10.66119 -10.52564 -10.17579 -9.86953 -9.58693 -9.18236 -8.67000 -8.26068 -7.81082 -7.09047 -5.88034 -3.90145 1.48036 1.90043 3.27019 3.40061 3.44025 3.48264 3.48932 4.49225 4.60044 4.75374 5.04760 5.21169 5.24720 5.32744 5.45040 5.45652 5.49891 5.71800 5.76301 5.84414 5.93339 5.97505 6.11324 6.25525 6.40268 6.47982 6.54212 6.55863 6.57672 7.15793 7.26376 7.50992 7.74579 7.90600 8.04571 8.10114 8.51765 8.72691 9.13135 9.71623 11.21148 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.008940 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.443766 B = 3131.361767 C = 4213.008079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.031 4.031 3 C -0.144 4.144 4 C 0.067 3.933 5 N -0.590 5.590 6 H 0.406 0.594 7 C 0.045 3.955 8 C -0.098 4.098 9 C -0.166 4.166 10 C 0.071 3.929 11 N -0.430 5.430 12 C 0.102 3.898 13 C -0.092 4.092 14 C 0.084 3.916 15 C -0.498 4.498 16 H 0.051 0.949 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.111 0.889 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.027 0.973 34 H 0.033 0.967 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 10.230 10.032 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 C -0.201 4.201 4 C -0.040 4.040 5 N -0.194 5.194 6 H 0.242 0.758 7 C -0.066 4.066 8 C -0.127 4.127 9 C -0.188 4.188 10 C -0.096 4.096 11 N -0.137 5.137 12 C -0.032 4.032 13 C -0.098 4.098 14 C 0.047 3.953 15 C -0.537 4.537 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.933 9.664 9.263 13.952 hybrid contribution -1.404 0.135 0.623 1.542 sum -5.336 9.799 9.886 14.908 Atomic orbital electron populations 1.21795 0.94736 1.02596 1.00776 1.19842 0.95427 0.94876 0.94868 1.21850 1.01656 0.95517 1.01086 1.19965 1.01933 0.97972 0.84090 1.41331 1.46792 1.26761 1.04562 0.75785 1.19073 1.00433 0.94973 0.92120 1.20288 1.01813 1.00020 0.90598 1.21685 1.00205 0.96414 1.00461 1.22511 0.99576 0.98911 0.88652 1.67118 1.15211 1.20178 1.11182 1.20165 0.97043 0.91780 0.94218 1.20940 1.00660 0.95220 0.93009 1.17721 0.96612 0.93792 0.87188 1.21004 1.04885 1.16428 1.11347 0.93033 1.24954 0.95396 0.97317 0.96586 1.69940 1.24464 1.39964 1.19232 0.86692 0.81468 0.82182 0.77870 1.20398 1.21337 1.20331 0.92292 0.91665 0.93874 0.87061 0.92225 0.92186 0.93683 0.86072 0.85320 0.83358 0.95519 0.94918 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.18 37.16 0.34 -1.64 16 2 C -0.03 -0.50 3.25 -91.77 -0.30 -0.80 16 3 C -0.14 -1.84 9.18 37.16 0.34 -1.50 16 4 C 0.07 1.25 5.59 -81.82 -0.46 0.80 16 5 N -0.59 -9.44 6.06 -6.94 -0.04 -9.48 16 6 H 0.41 4.95 8.96 -40.82 -0.37 4.58 16 7 C 0.04 0.80 7.29 -83.96 -0.61 0.19 16 8 C -0.10 -1.44 10.19 -39.20 -0.40 -1.84 16 9 C -0.17 -2.36 10.09 -39.39 -0.40 -2.76 16 10 C 0.07 1.21 11.16 -17.51 -0.20 1.01 16 11 N -0.43 -9.49 10.42 -9.86 -0.10 -9.60 16 12 C 0.10 2.27 7.49 -83.12 -0.62 1.65 16 13 C -0.09 -2.12 5.50 -102.70 -0.57 -2.68 16 14 C 0.08 2.26 5.09 -29.03 -0.15 2.12 16 15 C -0.50 -14.39 9.09 -34.44 -0.31 -14.70 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.89 22.20 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.11 2.07 6.67 -51.93 -0.35 1.73 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.03 0.72 7.06 -51.94 -0.37 0.35 16 34 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -33.04 299.09 -8.19 -41.23 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.85 Total: 1.04 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.42 Total: -18.57 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.59 Total: -45.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.04 -8.19 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.330 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.51 seconds