Wall clock time and date at job start Mon Mar 30 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.50705 * 109.47099 * 119.99884 * 2 1 3 5 5 N 1.36635 * 125.02723 * 300.02836 * 4 2 1 6 6 H 0.96994 * 125.09543 * 359.97438 * 5 4 2 7 7 C 1.37623 * 109.80475 * 179.97438 * 5 4 2 8 8 C 1.39196 * 133.71280 * 179.97438 * 7 5 4 9 9 C 1.38306 * 118.28605 * 180.02562 * 8 7 5 10 10 C 1.38685 * 119.67570 * 359.97438 * 9 8 7 11 11 N 1.31534 * 121.27498 * 0.26431 * 10 9 8 12 12 C 1.32996 * 121.40002 * 359.47426 * 11 10 9 13 13 C 1.34363 * 125.02577 * 119.99949 * 4 2 1 14 14 C 1.50703 * 126.45663 * 0.04332 * 13 4 2 15 15 C 1.50704 * 109.46874 * 269.99642 * 14 13 4 16 16 H 1.07999 * 120.00331 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99521 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00491 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99765 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47172 * 60.00080 * 19 17 15 21 21 H 1.48500 * 109.47007 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47445 * 299.99847 * 19 17 15 23 23 H 1.09003 * 109.46978 * 59.99860 * 1 2 3 24 24 H 1.08996 * 109.47659 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47334 * 299.99988 * 1 2 3 26 26 H 1.08997 * 109.47334 * 240.00012 * 2 1 3 27 27 H 1.09004 * 109.47139 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47468 * 300.00391 * 3 2 1 29 29 H 1.09007 * 109.46888 * 59.99868 * 3 2 1 30 30 H 1.07991 * 120.85735 * 0.02562 * 8 7 5 31 31 H 1.08000 * 120.16147 * 179.97438 * 9 8 7 32 32 H 1.08002 * 119.35959 * 179.97438 * 10 9 8 33 33 H 1.08989 * 109.47498 * 29.99950 * 14 13 4 34 34 H 1.09002 * 109.46828 * 150.00076 * 14 13 4 35 35 H 0.96993 * 120.00427 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7658 -0.3345 2.5168 6 1 1.2258 0.4290 2.7742 7 6 2.3785 -1.2016 3.3925 8 6 2.4372 -1.2849 4.7807 9 6 3.1663 -2.3158 5.3452 10 6 3.8119 -3.2293 4.5254 11 7 3.7501 -3.1336 3.2150 12 6 3.0584 -2.1642 2.6228 13 6 2.8080 -1.8075 1.2249 14 6 3.3229 -2.5340 0.0091 15 6 2.3344 -3.5966 -0.3971 16 1 1.4242 -3.7319 0.1683 17 6 2.5920 -4.3959 -1.4906 18 7 3.7006 -4.2315 -2.1788 19 14 1.3665 -5.7125 -1.9946 20 1 0.0618 -5.0785 -2.3131 21 1 1.8739 -6.4284 -3.1926 22 1 1.1891 -6.6767 -0.8793 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.9267 -0.5632 5.4010 31 1 3.2325 -2.4089 6.4191 32 1 4.3801 -4.0320 4.9716 33 1 3.4523 -1.8262 -0.8094 34 1 4.2808 -2.9990 0.2423 35 1 3.8817 -4.7935 -2.9483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260913564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:20 Heat of formation + Delta-G solvation = 23.305470 kcal Electronic energy + Delta-G solvation = -17325.802486 eV Core-core repulsion = 14708.444697 eV Total energy + Delta-G solvation = -2617.357789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47287 -39.09412 -35.82073 -35.37238 -33.69117 -31.99915 -30.05863 -28.58628 -27.99698 -25.05199 -24.74343 -23.60815 -21.59131 -19.90463 -18.58565 -18.40496 -17.48574 -16.77559 -16.48160 -15.84312 -15.66603 -15.36159 -14.52894 -14.34347 -14.15720 -14.07398 -13.74339 -13.39194 -13.26430 -13.01961 -12.88515 -12.61976 -12.55041 -12.07557 -11.88844 -11.83225 -11.67965 -11.57882 -10.86532 -10.55015 -10.04134 -9.16777 -8.67676 -8.09083 -6.24601 0.19530 0.57630 1.36185 1.40867 1.48274 1.79145 2.16586 2.43814 3.13239 3.15896 3.43336 3.86884 4.02347 4.06655 4.14347 4.26361 4.28055 4.41375 4.60666 4.77423 4.82140 4.85708 4.94461 5.02572 5.04425 5.18825 5.26033 5.30398 5.39269 5.42324 5.62415 5.68610 5.79545 5.93544 6.22117 6.30181 6.75870 6.85779 7.36637 7.42305 8.96083 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.008940 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.443766 B = 3131.361767 C = 4213.008079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C -0.135 4.135 4 C 0.098 3.902 5 N -0.567 5.567 6 H 0.430 0.570 7 C 0.038 3.962 8 C -0.083 4.083 9 C -0.152 4.152 10 C 0.064 3.936 11 N -0.497 5.497 12 C 0.054 3.946 13 C -0.164 4.164 14 C 0.105 3.895 15 C -0.512 4.512 16 H 0.042 0.958 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.172 0.828 31 H 0.181 0.819 32 H 0.173 0.827 33 H 0.007 0.993 34 H -0.019 1.019 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 11.958 12.650 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.192 4.192 4 C -0.011 4.011 5 N -0.173 5.173 6 H 0.270 0.730 7 C -0.073 4.073 8 C -0.111 4.111 9 C -0.173 4.173 10 C -0.103 4.103 11 N -0.206 5.206 12 C -0.078 4.078 13 C -0.171 4.171 14 C 0.067 3.933 15 C -0.550 4.550 16 H 0.060 0.940 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.784 3.216 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.189 0.811 31 H 0.198 0.802 32 H 0.190 0.810 33 H 0.025 0.975 34 H 0.000 1.000 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.361 11.431 11.905 17.688 hybrid contribution -0.587 -0.397 -0.056 0.711 sum -6.948 11.034 11.849 17.619 Atomic orbital electron populations 1.21756 0.92515 1.01574 1.03390 1.19912 0.97173 0.96354 0.92027 1.21794 1.00718 0.93182 1.03551 1.20102 0.99058 0.95976 0.85992 1.41129 1.46168 1.26905 1.03080 0.72970 1.19269 1.00299 0.94283 0.93424 1.20899 1.00596 1.00465 0.89169 1.22213 0.97894 0.94586 1.02602 1.23157 0.99430 1.00128 0.87571 1.67015 1.17584 1.22051 1.13947 1.20258 0.99330 0.93891 0.94299 1.20645 1.05353 0.98434 0.92684 1.17226 0.94064 0.93129 0.88844 1.21249 1.04906 1.17348 1.11492 0.93988 1.25871 0.97396 0.99645 0.96443 1.70078 1.26318 1.41096 1.19711 0.85594 0.79437 0.79007 0.77571 1.18696 1.20213 1.20274 0.90053 0.94470 0.90892 0.91018 0.93738 0.90017 0.90887 0.81080 0.80161 0.81019 0.97507 1.00025 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.18 71.98 0.66 -2.89 16 2 C -0.04 -1.13 3.25 -11.54 -0.04 -1.17 16 3 C -0.14 -3.23 9.18 71.98 0.66 -2.56 16 4 C 0.10 3.74 5.59 40.93 0.23 3.97 16 5 N -0.57 -17.04 6.06 -175.88 -1.07 -18.11 16 6 H 0.43 8.73 8.96 -92.71 -0.83 7.90 16 7 C 0.04 1.30 7.29 39.08 0.28 1.58 16 8 C -0.08 -2.07 10.19 22.52 0.23 -1.84 16 9 C -0.15 -3.70 10.09 22.39 0.23 -3.48 16 10 C 0.06 2.13 11.16 84.84 0.95 3.08 16 11 N -0.50 -22.98 10.42 -185.10 -1.93 -24.91 16 12 C 0.05 2.52 7.49 41.72 0.31 2.83 16 13 C -0.16 -8.13 5.50 -18.62 -0.10 -8.23 16 14 C 0.10 6.22 5.09 29.10 0.15 6.37 16 15 C -0.51 -31.64 9.09 25.60 0.23 -31.41 16 16 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -59.31 13.29 21.45 0.28 -59.02 16 19 Si 0.96 47.00 29.54 68.60 2.03 49.03 16 20 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.88 6.67 -2.39 -0.02 2.86 16 27 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.17 2.62 8.06 -2.92 -0.02 2.60 16 31 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.17 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.01 0.41 7.06 -2.39 -0.02 0.39 16 34 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -80.90 299.09 3.83 -77.07 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.26 Total: 9.00 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.25 Total: -33.07 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -2.71 Total: -102.04 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -80.90 3.83 -77.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.377 kcal (2) G-P(sol) polarization free energy of solvation -80.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds