Wall clock time and date at job start Mon Mar 30 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 C 1.50704 * 109.47070 * 120.00069 * 2 1 3 5 5 C 1.35107 * 126.40908 * 120.61785 * 4 2 1 6 6 C 1.50701 * 125.68801 * 0.02753 * 5 4 2 7 7 C 1.50707 * 109.46735 * 265.64498 * 6 5 4 8 8 H 1.07994 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99882 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46750 * 59.99905 * 11 9 7 13 13 H 1.48497 * 109.47153 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47106 * 300.00162 * 11 9 7 15 15 N 1.33513 * 108.62633 * 180.02562 * 5 4 2 16 16 C 1.32565 * 109.15869 * 0.02562 * 15 5 4 17 17 C 1.40934 * 132.32504 * 180.02562 * 16 15 5 18 18 C 1.36023 * 119.32216 * 179.97438 * 17 16 15 19 19 C 1.40469 * 119.69793 * 359.97438 * 18 17 16 20 20 C 1.34952 * 120.29781 * 0.02562 * 19 18 17 21 21 N 1.36480 * 120.61259 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.46650 * 305.38251 * 1 2 3 23 23 H 1.08996 * 109.47196 * 65.37975 * 1 2 3 24 24 H 1.08994 * 109.47352 * 185.38807 * 1 2 3 25 25 H 1.08997 * 109.46859 * 239.99795 * 2 1 3 26 26 H 1.09003 * 109.46837 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47170 * 300.00080 * 3 2 1 28 28 H 1.08997 * 109.47309 * 60.00070 * 3 2 1 29 29 H 1.09004 * 109.47328 * 25.64095 * 6 5 4 30 30 H 1.09000 * 109.47472 * 145.64656 * 6 5 4 31 31 H 0.97008 * 119.99944 * 179.97438 * 10 9 7 32 32 H 1.07991 * 120.33756 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.14966 * 180.27522 * 18 17 16 34 34 H 1.07998 * 119.85135 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.69270 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8218 -1.8066 1.2575 6 6 3.3564 -2.5349 0.0514 7 6 2.4352 -3.6761 -0.2955 8 1 1.5514 -3.8561 0.2984 9 6 2.7214 -4.4908 -1.3702 10 7 3.7981 -4.2718 -2.0931 11 14 1.5800 -5.9057 -1.7998 12 1 0.2263 -5.3753 -2.1020 13 1 2.1067 -6.6234 -2.9883 14 1 1.4992 -6.8429 -0.6506 15 7 3.0493 -2.1369 2.5310 16 6 2.4228 -1.2773 3.3220 17 6 2.3337 -1.1693 4.7244 18 6 1.6022 -0.1605 5.2698 19 6 0.9483 0.7570 4.4310 20 6 1.0429 0.6407 3.0898 21 7 1.7726 -0.3673 2.5294 22 1 -0.3633 0.5951 0.8379 23 1 -0.3633 0.4281 -0.9342 24 1 -0.3634 -1.0230 0.0965 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 3.4158 -1.8467 -0.7919 30 1 4.3500 -2.9245 0.2730 31 1 3.9997 -4.8453 -2.8491 32 1 2.8411 -1.8803 5.3595 33 1 1.5286 -0.0626 6.3428 34 1 0.3671 1.5592 4.8613 35 1 0.5357 1.3514 2.4541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260916388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:44 Heat of formation + Delta-G solvation = 68.015890 kcal Electronic energy + Delta-G solvation = -17452.133241 eV Core-core repulsion = 14836.714241 eV Total energy + Delta-G solvation = -2615.419000 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.30936 -37.18098 -35.29962 -33.31832 -32.49853 -30.45186 -28.57206 -27.05477 -26.92846 -23.76835 -22.84393 -22.30392 -20.41817 -19.51769 -16.59861 -16.42133 -16.30082 -15.38546 -15.24613 -14.90467 -14.40318 -14.06215 -13.55899 -12.93741 -12.40336 -12.30603 -12.13450 -12.06362 -11.87441 -11.28745 -11.21899 -11.03653 -10.94666 -10.71477 -10.69642 -10.47408 -10.30758 -9.86559 -9.39655 -9.14871 -8.35505 -7.96694 -7.18387 -5.98217 -4.00163 1.09081 1.69560 3.08072 3.36280 3.39864 3.42087 3.51465 4.06857 4.51207 4.62979 4.77338 4.91577 5.14221 5.21880 5.25992 5.36955 5.45536 5.47292 5.75006 5.80820 5.88715 5.95771 6.09900 6.16789 6.26207 6.29297 6.36046 6.45127 6.53836 6.69947 6.96443 7.40521 7.45629 7.65084 7.78712 7.97874 8.38107 8.70698 9.02168 9.62085 11.12022 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.007169 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.511105 B = 3904.847966 C = 4401.526181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.013 4.013 3 C -0.145 4.145 4 C -0.074 4.074 5 C 0.119 3.881 6 C 0.088 3.912 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 N -0.485 5.485 16 C 0.201 3.799 17 C -0.073 4.073 18 C -0.120 4.120 19 C -0.163 4.163 20 C 0.061 3.939 21 N -0.357 5.357 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 12.651 9.126 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.185 4.185 5 C -0.013 4.013 6 C 0.051 3.949 7 C -0.542 4.542 8 H 0.072 0.928 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 N -0.205 5.205 16 C -0.041 4.041 17 C -0.094 4.094 18 C -0.144 4.144 19 C -0.185 4.185 20 C -0.062 4.062 21 N -0.031 5.031 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.127 0.873 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.871 11.922 9.145 16.132 hybrid contribution -1.165 -0.125 -0.372 1.230 sum -7.037 11.797 8.773 16.299 Atomic orbital electron populations 1.21857 0.95124 1.02316 1.00838 1.19564 0.95046 0.94573 0.94073 1.21896 1.01637 0.95797 1.00959 1.20951 1.10988 1.03671 0.82845 1.21785 0.94447 0.91529 0.93561 1.17817 0.96845 0.94015 0.86257 1.20915 1.08508 1.12352 1.12384 0.92811 1.24944 0.95416 0.97604 0.96192 1.69941 1.25486 1.39198 1.18840 0.86610 0.80900 0.82456 0.77791 1.20290 1.21211 1.20219 1.70782 1.23791 1.24216 1.01746 1.21023 0.99018 0.90817 0.93207 1.20191 1.00099 0.99396 0.89675 1.20824 0.98398 0.95140 1.00045 1.20596 1.04157 1.02126 0.91626 1.21546 0.97198 0.92424 0.95043 1.42638 1.32697 1.20060 1.07661 0.93919 0.92233 0.91910 0.87303 0.92334 0.92199 0.93749 0.94534 0.94474 0.92818 0.83886 0.84903 0.84193 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.06 37.16 0.34 -1.78 16 2 C -0.01 -0.22 3.15 -91.77 -0.29 -0.51 16 3 C -0.15 -1.99 9.13 37.16 0.34 -1.65 16 4 C -0.07 -1.49 5.58 -81.47 -0.45 -1.95 16 5 C 0.12 2.87 6.25 -82.97 -0.52 2.35 16 6 C 0.09 2.39 5.24 -29.03 -0.15 2.24 16 7 C -0.50 -14.55 9.09 -34.44 -0.31 -14.86 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 N -0.48 -11.65 11.32 -9.00 -0.10 -11.75 16 16 C 0.20 4.00 7.81 -156.03 -1.22 2.79 16 17 C -0.07 -1.12 10.11 -39.36 -0.40 -1.52 16 18 C -0.12 -1.43 10.07 -39.54 -0.40 -1.83 16 19 C -0.16 -1.86 9.99 -39.91 -0.40 -2.26 16 20 C 0.06 0.84 9.63 -16.65 -0.16 0.68 16 21 N -0.36 -6.48 2.94 -58.46 -0.17 -6.65 16 22 H 0.04 0.54 6.33 -51.93 -0.33 0.22 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.11 2.06 6.70 -51.93 -0.35 1.72 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.54 6.32 -51.93 -0.33 0.22 16 29 H 0.04 0.98 6.94 -51.93 -0.36 0.62 16 30 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.15 1.70 5.67 -52.49 -0.30 1.40 16 LS Contribution 291.84 15.07 4.40 4.40 Total: -1.00 -32.76 291.84 -8.47 -41.23 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.59 Total: -1.63 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -3.72 Total: -16.70 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.46 Total: -44.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.76 -8.47 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.244 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds