Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 C 1.50704 * 109.47070 * 120.00069 * 2 1 3 5 5 C 1.35107 * 126.40908 * 120.61785 * 4 2 1 6 6 C 1.50701 * 125.68801 * 0.02753 * 5 4 2 7 7 C 1.50707 * 109.46735 * 265.64498 * 6 5 4 8 8 H 1.07994 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99882 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46750 * 59.99905 * 11 9 7 13 13 H 1.48497 * 109.47153 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47106 * 300.00162 * 11 9 7 15 15 N 1.33513 * 108.62633 * 180.02562 * 5 4 2 16 16 C 1.32565 * 109.15869 * 0.02562 * 15 5 4 17 17 C 1.40934 * 132.32504 * 180.02562 * 16 15 5 18 18 C 1.36023 * 119.32216 * 179.97438 * 17 16 15 19 19 C 1.40469 * 119.69793 * 359.97438 * 18 17 16 20 20 C 1.34952 * 120.29781 * 0.02562 * 19 18 17 21 21 N 1.36480 * 120.61259 * 0.02562 * 20 19 18 22 22 H 1.09001 * 109.46650 * 305.38251 * 1 2 3 23 23 H 1.08996 * 109.47196 * 65.37975 * 1 2 3 24 24 H 1.08994 * 109.47352 * 185.38807 * 1 2 3 25 25 H 1.08997 * 109.46859 * 239.99795 * 2 1 3 26 26 H 1.09003 * 109.46837 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47170 * 300.00080 * 3 2 1 28 28 H 1.08997 * 109.47309 * 60.00070 * 3 2 1 29 29 H 1.09004 * 109.47328 * 25.64095 * 6 5 4 30 30 H 1.09000 * 109.47472 * 145.64656 * 6 5 4 31 31 H 0.97008 * 119.99944 * 179.97438 * 10 9 7 32 32 H 1.07991 * 120.33756 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.14966 * 180.27522 * 18 17 16 34 34 H 1.07998 * 119.85135 * 180.02562 * 19 18 17 35 35 H 1.08002 * 119.69270 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8218 -1.8066 1.2575 6 6 3.3564 -2.5349 0.0514 7 6 2.4352 -3.6761 -0.2955 8 1 1.5514 -3.8561 0.2984 9 6 2.7214 -4.4908 -1.3702 10 7 3.7981 -4.2718 -2.0931 11 14 1.5800 -5.9057 -1.7998 12 1 0.2263 -5.3753 -2.1020 13 1 2.1067 -6.6234 -2.9883 14 1 1.4992 -6.8429 -0.6506 15 7 3.0493 -2.1369 2.5310 16 6 2.4228 -1.2773 3.3220 17 6 2.3337 -1.1693 4.7244 18 6 1.6022 -0.1605 5.2698 19 6 0.9483 0.7570 4.4310 20 6 1.0429 0.6407 3.0898 21 7 1.7726 -0.3673 2.5294 22 1 -0.3633 0.5951 0.8379 23 1 -0.3633 0.4281 -0.9342 24 1 -0.3634 -1.0230 0.0965 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 3.4158 -1.8467 -0.7919 30 1 4.3500 -2.9245 0.2730 31 1 3.9997 -4.8453 -2.8491 32 1 2.8411 -1.8803 5.3595 33 1 1.5286 -0.0626 6.3428 34 1 0.3671 1.5592 4.8613 35 1 0.5357 1.3514 2.4541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260916388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = 48.308703 kcal Electronic energy + Delta-G solvation = -17452.987809 eV Core-core repulsion = 14836.714241 eV Total energy + Delta-G solvation = -2616.273567 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -43.71048 -38.44818 -36.61371 -35.34838 -33.90688 -32.11051 -30.05288 -28.67902 -28.05950 -25.64372 -24.16491 -23.64476 -21.82357 -21.02900 -18.55451 -17.89748 -17.62612 -16.73721 -16.70178 -16.36704 -15.98871 -15.25554 -14.79476 -14.44594 -14.15574 -14.00939 -13.66236 -13.11136 -13.09528 -12.97612 -12.78612 -12.60781 -12.45888 -12.23963 -12.22418 -11.91792 -11.68432 -11.67861 -11.50812 -10.76324 -10.58667 -9.42287 -8.58420 -8.20066 -6.33150 -0.03223 0.46438 1.35638 1.40006 1.48058 1.77835 2.03449 2.41316 2.72204 3.08835 3.42653 3.66338 3.71260 3.94482 4.12591 4.20251 4.23364 4.33475 4.53519 4.69736 4.71199 4.76982 4.87372 4.91331 5.05904 5.14339 5.16677 5.26672 5.31397 5.36352 5.38901 5.53106 5.69855 5.75243 5.83853 6.18387 6.38321 6.73997 7.15425 7.33605 8.89052 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.007169 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.511105 B = 3904.847966 C = 4401.526181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 C -0.135 4.135 4 C -0.069 4.069 5 C 0.063 3.937 6 C 0.105 3.895 7 C -0.522 4.522 8 H 0.040 0.960 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.264 1.264 13 H -0.273 1.273 14 H -0.276 1.276 15 N -0.549 5.549 16 C 0.191 3.809 17 C -0.112 4.112 18 C -0.081 4.081 19 C -0.142 4.142 20 C 0.039 3.961 21 N -0.358 5.358 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.023 0.977 30 H -0.007 1.007 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.195 0.805 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 15.276 11.286 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.193 4.193 4 C -0.180 4.180 5 C -0.067 4.067 6 C 0.067 3.933 7 C -0.560 4.560 8 H 0.059 0.941 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.189 1.189 13 H -0.198 1.198 14 H -0.201 1.201 15 N -0.271 5.271 16 C -0.052 4.052 17 C -0.133 4.133 18 C -0.104 4.104 19 C -0.162 4.162 20 C -0.083 4.083 21 N -0.030 5.030 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.011 0.989 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.200 0.800 34 H 0.213 0.787 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.936 14.572 11.303 20.493 hybrid contribution -0.257 -0.785 -0.796 1.147 sum -9.193 13.787 10.507 19.621 Atomic orbital electron populations 1.21797 0.92982 1.01166 1.03332 1.19625 0.96751 0.95972 0.91201 1.21821 1.00528 0.93591 1.03319 1.21025 1.09718 1.02491 0.84805 1.21287 0.98218 0.94264 0.92960 1.17376 0.94514 0.93642 0.87803 1.21106 1.08522 1.13599 1.12764 0.94141 1.25850 0.97047 1.00257 0.95735 1.70063 1.27027 1.40356 1.19236 0.85513 0.79147 0.78720 0.77736 1.18877 1.19757 1.20129 1.70549 1.26984 1.27336 1.02230 1.21608 0.98394 0.90367 0.94834 1.20526 1.03035 1.02108 0.87583 1.21501 0.94134 0.92157 1.02611 1.21359 1.02250 1.02210 0.90381 1.22377 0.97101 0.91875 0.96898 1.42664 1.33011 1.20856 1.06448 0.91141 0.89824 0.94945 0.90900 0.94101 0.89614 0.91444 0.95898 0.98896 0.92364 0.83060 0.80028 0.78749 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.06 71.98 0.65 -3.16 16 2 C -0.02 -0.54 3.15 -11.54 -0.04 -0.58 16 3 C -0.14 -3.51 9.13 71.98 0.66 -2.85 16 4 C -0.07 -2.89 5.58 41.06 0.23 -2.66 16 5 C 0.06 3.34 6.25 41.58 0.26 3.60 16 6 C 0.10 6.26 5.24 29.10 0.15 6.41 16 7 C -0.52 -32.47 9.09 25.60 0.23 -32.24 16 8 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.01 0.57 5.46 84.65 0.46 1.03 16 10 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 11 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 12 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 N -0.55 -28.48 11.32 -182.40 -2.06 -30.54 16 16 C 0.19 7.77 7.81 134.10 1.05 8.82 16 17 C -0.11 -3.24 10.11 22.42 0.23 -3.02 16 18 C -0.08 -1.48 10.07 22.30 0.22 -1.25 16 19 C -0.14 -2.30 9.99 22.06 0.22 -2.08 16 20 C 0.04 0.90 9.63 83.21 0.80 1.70 16 21 N -0.36 -12.74 2.94 -338.87 -1.00 -13.74 16 22 H 0.07 1.56 6.33 -2.39 -0.02 1.54 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 3.00 6.70 -2.39 -0.02 2.99 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.42 6.32 -2.39 -0.02 1.40 16 29 H 0.02 1.37 6.94 -2.39 -0.02 1.36 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 32 H 0.15 3.96 8.06 -2.92 -0.02 3.94 16 33 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.18 3.02 5.67 -2.91 -0.02 3.01 16 Total: -1.00 -80.98 291.84 5.46 -75.52 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.08 Total: 4.08 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.13 Total: -26.29 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -2.78 Total: -101.95 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -80.98 5.46 -75.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260916388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.834 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds