Wall clock time and date at job start Mon Mar 30 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35665 * 126.44478 * 2 1 4 4 C 1.50703 * 125.68073 * 359.92996 * 3 2 1 5 5 C 1.53007 * 109.46628 * 120.00852 * 4 3 2 6 6 C 1.52996 * 109.47476 * 240.00332 * 4 3 2 7 7 N 1.33081 * 108.63088 * 180.20448 * 3 2 1 8 8 C 1.32813 * 109.23814 * 359.62129 * 7 3 2 9 9 C 1.40467 * 132.09696 * 180.15130 * 8 7 3 10 10 C 1.38287 * 119.98209 * 180.24836 * 9 8 7 11 11 C 1.38623 * 119.90699 * 359.97438 * 10 9 8 12 12 C 1.40053 * 119.82217 * 0.02562 * 11 10 9 13 13 C 1.39348 * 120.01012 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00221 * 140.88483 * 13 12 11 15 15 C 1.40307 * 119.99772 * 320.89004 * 13 12 11 16 16 N 1.30668 * 119.99962 * 170.14104 * 15 13 12 17 17 Si 1.86796 * 120.00121 * 350.14088 * 15 13 12 18 18 H 1.48501 * 109.47175 * 91.40962 * 17 15 13 19 19 H 1.48497 * 109.47384 * 211.41018 * 17 15 13 20 20 H 1.48504 * 109.47301 * 331.41265 * 17 15 13 21 21 N 1.36616 * 126.44142 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47122 * 96.22700 * 1 2 3 23 23 H 1.08997 * 109.47299 * 216.23126 * 1 2 3 24 24 H 1.09004 * 109.46942 * 336.23343 * 1 2 3 25 25 H 1.08994 * 109.47482 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47038 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.47136 * 59.99524 * 5 4 3 28 28 H 1.08999 * 109.46861 * 300.00135 * 5 4 3 29 29 H 1.08998 * 109.46973 * 300.00896 * 6 4 3 30 30 H 1.09005 * 109.46475 * 60.00292 * 6 4 3 31 31 H 1.08996 * 109.47370 * 180.02562 * 6 4 3 32 32 H 1.08000 * 120.00853 * 0.26606 * 9 8 7 33 33 H 1.07998 * 120.04919 * 179.97438 * 10 9 8 34 34 H 1.08010 * 120.08772 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00167 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3129 1.0913 0.0000 4 6 1.8504 2.5256 -0.0015 5 6 2.3793 3.2333 1.2477 6 6 2.3814 3.2315 -1.2507 7 7 3.5799 0.6842 -0.0045 8 6 3.6130 -0.6435 0.0009 9 6 4.6784 -1.5590 0.0022 10 6 4.4218 -2.9178 0.0032 11 6 3.1129 -3.3741 0.0034 12 6 2.0552 -2.4560 0.0020 13 6 0.7379 -2.9104 0.0016 14 1 -0.0095 -2.4000 0.5908 15 6 0.3826 -4.0310 -0.7642 16 7 -0.7971 -4.5740 -0.6193 17 14 1.5960 -4.7469 -1.9907 18 1 2.4042 -5.8025 -1.3290 19 1 0.8544 -5.3355 -3.1347 20 1 2.4942 -3.6719 -2.4835 21 7 2.3185 -1.0990 0.0005 22 1 -0.3633 -0.1115 -1.0216 23 1 -0.3634 -0.8289 0.6074 24 1 -0.3633 0.9406 0.4142 25 1 0.7609 2.5561 -0.0021 26 1 2.0452 4.2707 1.2465 27 1 3.4689 3.2028 1.2487 28 1 2.0010 2.7304 2.1377 29 1 3.4709 3.2010 -1.2497 30 1 2.0046 2.7273 -2.1407 31 1 2.0472 4.2690 -1.2515 32 1 5.6975 -1.2017 0.0028 33 1 5.2401 -3.6226 0.0038 34 1 2.9092 -4.4348 0.0045 35 1 -1.0426 -5.3490 -1.1485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:38 Heat of formation + Delta-G solvation = 54.067679 kcal Electronic energy + Delta-G solvation = -17676.839470 eV Core-core repulsion = 15060.815631 eV Total energy + Delta-G solvation = -2616.023839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55991 -36.84484 -34.61205 -33.79894 -32.59791 -29.97518 -29.32411 -26.73843 -26.67502 -24.34072 -22.81283 -21.69253 -20.15327 -18.79406 -17.70392 -16.20417 -15.86477 -15.18828 -14.85652 -14.29060 -13.97389 -13.49573 -13.19879 -12.78697 -12.64477 -12.43083 -12.18390 -12.02088 -11.82703 -11.66380 -11.38515 -11.05568 -10.92764 -10.82624 -10.44657 -10.33104 -10.14082 -9.90702 -9.63332 -9.45167 -8.91452 -7.55441 -7.33673 -6.69651 -4.91408 1.96394 2.48312 2.90201 2.99196 3.10490 3.67893 3.75135 3.80269 4.35529 4.91156 5.10553 5.29495 5.55358 5.63720 5.77388 5.89149 5.94980 5.97493 6.11252 6.19956 6.24821 6.26277 6.33231 6.35899 6.46243 6.51997 6.63003 6.65433 6.68795 6.90178 7.04224 7.28373 7.42601 7.50111 7.79200 7.87094 8.08320 8.10815 8.49935 9.05330 9.64883 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027924 B = 0.008497 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.464132 B = 3294.507765 C = 3894.941471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.076 4.076 3 C 0.042 3.958 4 C -0.008 4.008 5 C -0.136 4.136 6 C -0.135 4.135 7 N -0.529 5.529 8 C 0.265 3.735 9 C -0.241 4.241 10 C -0.028 4.028 11 C -0.324 4.324 12 C 0.270 3.730 13 C -0.443 4.443 14 H 0.111 0.889 15 C 0.093 3.907 16 N -0.784 5.784 17 Si 0.917 3.083 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.244 1.244 21 N -0.375 5.375 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 5.085 -0.751 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.189 4.189 3 C -0.090 4.090 4 C -0.027 4.027 5 C -0.193 4.193 6 C -0.193 4.193 7 N -0.250 5.250 8 C 0.022 3.978 9 C -0.263 4.263 10 C -0.051 4.051 11 C -0.345 4.345 12 C 0.167 3.833 13 C -0.473 4.473 14 H 0.128 0.872 15 C -0.131 4.131 16 N -0.406 5.406 17 Si 0.742 3.258 18 H -0.187 1.187 19 H -0.213 1.213 20 H -0.167 1.167 21 N -0.048 5.048 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.876 5.469 -0.788 5.835 hybrid contribution -0.327 -1.160 -0.463 1.291 sum 1.549 4.309 -1.250 4.747 Atomic orbital electron populations 1.20220 0.88082 1.01925 1.02111 1.20698 0.94033 0.85171 1.18953 1.20237 0.89231 0.93905 1.05632 1.19379 0.99087 0.88638 0.95620 1.21728 1.01941 0.98627 0.97038 1.21722 1.01916 0.98625 0.97049 1.70349 1.20624 1.06805 1.27241 1.20637 0.84142 0.90052 1.02928 1.19589 0.95476 0.90689 1.20548 1.20676 0.96007 0.94208 0.94248 1.20493 0.91187 0.97808 1.25056 1.18019 0.95206 0.78937 0.91137 1.19191 0.93791 1.10044 1.24270 0.87187 1.26134 0.96159 0.93969 0.96833 1.69493 1.19997 1.17409 1.33693 0.86126 0.80007 0.80683 0.79030 1.18652 1.21284 1.16692 1.43434 1.08000 1.05554 1.47795 0.92208 0.90751 0.91952 0.90692 0.93195 0.92095 0.93157 0.92098 0.93140 0.93199 0.86167 0.87012 0.85900 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 9.28 36.01 0.33 -0.94 16 2 C -0.08 -1.72 7.00 -81.38 -0.57 -2.29 16 3 C 0.04 0.90 5.57 -82.97 -0.46 0.44 16 4 C -0.01 -0.13 3.27 -91.77 -0.30 -0.43 16 5 C -0.14 -2.04 9.18 37.16 0.34 -1.70 16 6 C -0.14 -2.05 9.18 37.16 0.34 -1.71 16 7 N -0.53 -12.46 11.30 -9.00 -0.10 -12.57 16 8 C 0.27 6.49 7.79 -155.87 -1.21 5.27 16 9 C -0.24 -5.35 10.14 -38.72 -0.39 -5.74 16 10 C -0.03 -0.59 10.07 -39.42 -0.40 -0.99 16 11 C -0.32 -7.46 7.03 -38.76 -0.27 -7.74 16 12 C 0.27 6.68 5.82 -83.89 -0.49 6.19 16 13 C -0.44 -11.03 8.52 -38.39 -0.33 -11.36 16 14 H 0.11 2.82 5.46 -52.49 -0.29 2.54 16 15 C 0.09 2.22 5.46 -17.27 -0.09 2.12 16 16 N -0.78 -18.78 13.92 55.57 0.77 -18.01 16 17 Si 0.92 19.37 24.57 -169.99 -4.18 15.19 16 18 H -0.26 -5.25 6.75 56.52 0.38 -4.87 16 19 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.24 -5.51 6.85 56.52 0.39 -5.12 16 21 N -0.37 -9.26 3.00 -55.96 -0.17 -9.43 16 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.07 1.52 5.42 -51.93 -0.28 1.24 16 24 H 0.06 1.00 6.89 -51.93 -0.36 0.64 16 25 H 0.07 1.13 6.65 -51.93 -0.35 0.79 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 33 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.12 2.71 5.25 -52.48 -0.28 2.44 16 35 H 0.30 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 282.89 15.07 4.26 4.26 Total: -1.00 -27.30 282.89 -7.43 -34.73 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.52 Total: 4.68 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.50 Total: -18.86 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.50 Total: -40.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.18 Total: 15.19 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.30 -7.43 -34.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.798 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds