Wall clock time and date at job start Mon Mar 30 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35665 * 126.44478 * 2 1 4 4 C 1.50703 * 125.68073 * 359.92996 * 3 2 1 5 5 C 1.53007 * 109.46628 * 120.00852 * 4 3 2 6 6 C 1.52996 * 109.47476 * 240.00332 * 4 3 2 7 7 N 1.33081 * 108.63088 * 180.20448 * 3 2 1 8 8 C 1.32813 * 109.23814 * 359.62129 * 7 3 2 9 9 C 1.40467 * 132.09696 * 180.15130 * 8 7 3 10 10 C 1.38287 * 119.98209 * 180.24836 * 9 8 7 11 11 C 1.38623 * 119.90699 * 359.97438 * 10 9 8 12 12 C 1.40053 * 119.82217 * 0.02562 * 11 10 9 13 13 C 1.39348 * 120.01012 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00221 * 140.88483 * 13 12 11 15 15 C 1.40307 * 119.99772 * 320.89004 * 13 12 11 16 16 N 1.30668 * 119.99962 * 170.14104 * 15 13 12 17 17 Si 1.86796 * 120.00121 * 350.14088 * 15 13 12 18 18 H 1.48501 * 109.47175 * 91.40962 * 17 15 13 19 19 H 1.48497 * 109.47384 * 211.41018 * 17 15 13 20 20 H 1.48504 * 109.47301 * 331.41265 * 17 15 13 21 21 N 1.36616 * 126.44142 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47122 * 96.22700 * 1 2 3 23 23 H 1.08997 * 109.47299 * 216.23126 * 1 2 3 24 24 H 1.09004 * 109.46942 * 336.23343 * 1 2 3 25 25 H 1.08994 * 109.47482 * 0.02562 * 4 3 2 26 26 H 1.08996 * 109.47038 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.47136 * 59.99524 * 5 4 3 28 28 H 1.08999 * 109.46861 * 300.00135 * 5 4 3 29 29 H 1.08998 * 109.46973 * 300.00896 * 6 4 3 30 30 H 1.09005 * 109.46475 * 60.00292 * 6 4 3 31 31 H 1.08996 * 109.47370 * 180.02562 * 6 4 3 32 32 H 1.08000 * 120.00853 * 0.26606 * 9 8 7 33 33 H 1.07998 * 120.04919 * 179.97438 * 10 9 8 34 34 H 1.08010 * 120.08772 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00167 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3129 1.0913 0.0000 4 6 1.8504 2.5256 -0.0015 5 6 2.3793 3.2333 1.2477 6 6 2.3814 3.2315 -1.2507 7 7 3.5799 0.6842 -0.0045 8 6 3.6130 -0.6435 0.0009 9 6 4.6784 -1.5590 0.0022 10 6 4.4218 -2.9178 0.0032 11 6 3.1129 -3.3741 0.0034 12 6 2.0552 -2.4560 0.0020 13 6 0.7379 -2.9104 0.0016 14 1 -0.0095 -2.4000 0.5908 15 6 0.3826 -4.0310 -0.7642 16 7 -0.7971 -4.5740 -0.6193 17 14 1.5960 -4.7469 -1.9907 18 1 2.4042 -5.8025 -1.3290 19 1 0.8544 -5.3355 -3.1347 20 1 2.4942 -3.6719 -2.4835 21 7 2.3185 -1.0990 0.0005 22 1 -0.3633 -0.1115 -1.0216 23 1 -0.3634 -0.8289 0.6074 24 1 -0.3633 0.9406 0.4142 25 1 0.7609 2.5561 -0.0021 26 1 2.0452 4.2707 1.2465 27 1 3.4689 3.2028 1.2487 28 1 2.0010 2.7304 2.1377 29 1 3.4709 3.2010 -1.2497 30 1 2.0046 2.7273 -2.1407 31 1 2.0472 4.2690 -1.2515 32 1 5.6975 -1.2017 0.0028 33 1 5.2401 -3.6226 0.0038 34 1 2.9092 -4.4348 0.0045 35 1 -1.0426 -5.3490 -1.1485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:38 Heat of formation + Delta-G solvation = 39.897114 kcal Electronic energy + Delta-G solvation = -17677.453952 eV Core-core repulsion = 15060.815631 eV Total energy + Delta-G solvation = -2616.638321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.30118 -38.51838 -36.18603 -35.41829 -34.35160 -31.61076 -31.08893 -28.41392 -27.93034 -26.03595 -24.40760 -23.44463 -21.81519 -20.37843 -19.49529 -17.92119 -17.59715 -16.86192 -16.59959 -15.93089 -15.44119 -14.97475 -14.78631 -14.42077 -14.16947 -14.00478 -13.81032 -13.60521 -13.38360 -13.05612 -12.93114 -12.74923 -12.32963 -12.15405 -12.01476 -11.90324 -11.70474 -11.57669 -11.33665 -11.19766 -10.66731 -9.30339 -9.12385 -8.46774 -6.75180 0.19451 0.72343 1.21772 1.30163 1.41240 1.96010 2.05018 2.07991 2.57564 3.10723 3.57033 3.85268 4.14994 4.19754 4.36848 4.37895 4.44468 4.48180 4.64638 4.69850 4.79528 4.87665 4.88067 4.89039 5.03736 5.04340 5.13922 5.17456 5.34070 5.44208 5.50705 5.54946 5.71552 5.72431 6.00599 6.12317 6.28687 6.32247 6.69603 7.28836 7.91540 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027924 B = 0.008497 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.464132 B = 3294.507765 C = 3894.941471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.106 4.106 3 C 0.044 3.956 4 C -0.012 4.012 5 C -0.129 4.129 6 C -0.129 4.129 7 N -0.544 5.544 8 C 0.231 3.769 9 C -0.243 4.243 10 C -0.026 4.026 11 C -0.328 4.328 12 C 0.249 3.751 13 C -0.467 4.467 14 H 0.089 0.911 15 C 0.067 3.933 16 N -0.811 5.811 17 Si 0.962 3.038 18 H -0.240 1.240 19 H -0.271 1.271 20 H -0.268 1.268 21 N -0.387 5.387 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 5.678 -1.155 6.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.218 4.218 3 C -0.089 4.089 4 C -0.032 4.032 5 C -0.186 4.186 6 C -0.187 4.187 7 N -0.265 5.265 8 C -0.012 4.012 9 C -0.265 4.265 10 C -0.050 4.050 11 C -0.350 4.350 12 C 0.146 3.854 13 C -0.497 4.497 14 H 0.107 0.893 15 C -0.154 4.154 16 N -0.435 5.435 17 Si 0.784 3.216 18 H -0.164 1.164 19 H -0.197 1.197 20 H -0.193 1.193 21 N -0.061 5.061 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.637 6.054 -1.181 6.708 hybrid contribution -0.512 -1.231 -0.301 1.367 sum 2.126 4.823 -1.482 5.475 Atomic orbital electron populations 1.20201 0.86411 1.02926 1.01888 1.21392 0.95479 0.85192 1.19743 1.21049 0.88308 0.95932 1.03588 1.19645 1.00319 0.86035 0.97178 1.21676 1.00779 1.00460 0.95733 1.21672 1.00759 1.00472 0.95752 1.70369 1.21836 1.06592 1.27706 1.21258 0.84835 0.90943 1.04124 1.20042 0.96059 0.91076 1.19322 1.21098 0.96466 0.94587 0.92801 1.20792 0.91793 0.98087 1.24327 1.18284 0.95671 0.79469 0.91996 1.19151 0.93773 1.11161 1.25601 0.89340 1.26658 0.97308 0.93884 0.97557 1.69489 1.20877 1.18297 1.34789 0.85474 0.78395 0.79861 0.77875 1.16410 1.19735 1.19277 1.43675 1.08585 1.05974 1.47888 0.92340 0.92604 0.88598 0.88744 0.89598 0.93732 0.93932 0.93721 0.94059 0.89580 0.84028 0.82650 0.85003 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.21 9.28 71.24 0.66 -1.55 16 2 C -0.11 -4.85 7.00 41.22 0.29 -4.57 16 3 C 0.04 1.84 5.57 41.77 0.23 2.08 16 4 C -0.01 -0.39 3.27 -11.54 -0.04 -0.43 16 5 C -0.13 -3.58 9.18 71.98 0.66 -2.92 16 6 C -0.13 -3.62 9.18 71.98 0.66 -2.96 16 7 N -0.54 -25.55 11.30 -182.38 -2.06 -27.61 16 8 C 0.23 11.27 7.79 133.86 1.04 12.32 16 9 C -0.24 -10.50 10.14 22.82 0.23 -10.26 16 10 C -0.03 -1.06 10.07 22.37 0.23 -0.83 16 11 C -0.33 -14.85 7.03 22.80 0.16 -14.69 16 12 C 0.25 12.48 5.82 38.84 0.23 12.71 16 13 C -0.47 -23.92 8.52 23.04 0.20 -23.72 16 14 H 0.09 4.79 5.46 -2.91 -0.02 4.78 16 15 C 0.07 3.24 5.46 85.37 0.47 3.70 16 16 N -0.81 -39.23 13.92 21.89 0.30 -38.93 16 17 Si 0.96 39.11 24.57 68.60 1.69 40.80 16 18 H -0.24 -8.88 6.75 99.48 0.67 -8.21 16 19 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -11.93 6.85 99.48 0.68 -11.24 16 21 N -0.39 -19.43 3.00 -330.95 -0.99 -20.42 16 22 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.06 2.37 5.42 -2.39 -0.01 2.36 16 24 H 0.10 2.97 6.89 -2.38 -0.02 2.95 16 25 H 0.09 2.58 6.65 -2.39 -0.02 2.57 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.14 5.37 8.06 -2.91 -0.02 5.34 16 33 H 0.16 4.79 8.06 -2.91 -0.02 4.76 16 34 H 0.13 5.62 5.25 -2.91 -0.02 5.61 16 35 H 0.31 13.13 8.29 -92.71 -0.77 12.36 16 Total: -1.00 -59.74 282.89 4.98 -54.75 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 1.03 Total: 22.55 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 5.01 Total: -31.13 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.75 Total: -86.96 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.69 Total: 40.80 kcal Total: -59.74 4.98 -54.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -59.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds