Wall clock time and date at job start Mon Mar 30 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40143 * 119.80752 * 2 1 4 4 C 1.38032 * 119.41977 * 179.97438 * 3 2 1 5 5 C 1.39293 * 119.14674 * 359.97438 * 4 3 2 6 6 C 1.41491 * 133.63948 * 179.97438 * 5 4 3 7 7 C 1.40270 * 126.60001 * 0.05056 * 6 5 4 8 8 H 1.07991 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.39610 * 119.99672 * 179.97438 * 7 6 5 10 10 N 1.31161 * 119.99920 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00143 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47102 * 89.99781 * 11 9 7 13 13 H 1.48495 * 109.47373 * 210.00121 * 11 9 7 14 14 H 1.48499 * 109.47043 * 330.00043 * 11 9 7 15 15 N 1.35046 * 106.79138 * 180.02562 * 6 5 4 16 16 C 1.30370 * 109.83613 * 0.02562 * 15 6 5 17 17 C 1.50703 * 124.94815 * 180.02562 * 16 15 6 18 18 C 1.53002 * 109.46966 * 60.02579 * 17 16 15 19 19 C 1.53000 * 109.46912 * 300.02667 * 17 16 15 20 20 N 1.36369 * 110.10186 * 0.26190 * 16 15 6 21 21 C 1.35320 * 119.80922 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47296 * 89.99858 * 1 2 3 23 23 H 1.08996 * 109.47120 * 210.00158 * 1 2 3 24 24 H 1.09007 * 109.46915 * 330.00068 * 1 2 3 25 25 H 1.08008 * 120.29360 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.42702 * 180.02562 * 4 3 2 27 27 H 0.97000 * 119.99767 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.47152 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46986 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.47075 * 299.99352 * 18 17 16 31 31 H 1.08996 * 109.47407 * 60.00310 * 18 17 16 32 32 H 1.09004 * 109.46724 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47194 * 299.99742 * 19 17 16 34 34 H 1.08992 * 109.47399 * 59.99914 * 19 17 16 35 35 H 1.07999 * 119.66443 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2036 1.2160 0.0000 4 6 3.5839 1.2067 0.0005 5 6 4.2541 -0.0144 0.0016 6 6 5.6216 -0.3778 0.0019 7 6 6.7190 0.4958 0.0021 8 1 6.5591 1.5638 0.0017 9 6 8.0181 -0.0155 0.0030 10 7 8.2123 -1.3127 0.0041 11 14 9.4797 1.1477 0.0025 12 1 9.8665 1.4571 1.4025 13 1 10.6223 0.5068 -0.6966 14 1 9.1122 2.4041 -0.6986 15 7 5.6666 -1.7275 0.0025 16 6 4.4557 -2.2105 0.0021 17 6 4.1115 -3.6777 0.0031 18 6 4.6958 -4.3377 1.2537 19 6 4.6987 -4.3401 -1.2449 20 7 3.5459 -1.1947 -0.0047 21 6 2.1797 -1.1742 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5139 25 1 1.6652 2.1523 0.0004 26 1 4.1372 2.1342 0.0010 27 1 9.1149 -1.6679 0.0043 28 1 3.0280 -3.7968 0.0019 29 1 4.4473 -5.3990 1.2542 30 1 5.7793 -4.2188 1.2547 31 1 4.2775 -3.8659 2.1427 32 1 4.4494 -5.4013 -1.2443 33 1 4.2825 -3.8699 -2.1358 34 1 5.7821 -4.2211 -1.2437 35 1 1.6311 -2.1045 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:44 Heat of formation + Delta-G solvation = 58.866342 kcal Electronic energy + Delta-G solvation = -17464.315096 eV Core-core repulsion = 14848.499342 eV Total energy + Delta-G solvation = -2615.815754 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95972 -36.59717 -34.73191 -33.37204 -31.56487 -31.08932 -27.85452 -26.60421 -26.06013 -24.72787 -22.54024 -21.22421 -20.38205 -18.68077 -17.35756 -15.60028 -15.49916 -14.89860 -14.41773 -14.22307 -13.96966 -13.32026 -13.06314 -13.01830 -12.79363 -12.37131 -12.05426 -11.60127 -11.40595 -11.28502 -11.18528 -10.87021 -10.73691 -10.63889 -10.42016 -10.21352 -10.16497 -10.09086 -9.52574 -8.83734 -8.27798 -7.69602 -6.52105 -6.45816 -4.03312 2.03986 2.49583 3.09686 3.13193 3.16760 3.98558 4.09488 4.41812 4.52481 5.25339 5.41485 5.46269 5.55012 5.56420 5.79078 5.80544 5.93214 5.97126 6.06221 6.10150 6.15070 6.24634 6.31317 6.39099 6.44029 6.55558 6.81849 6.82165 6.95868 7.15277 7.23462 7.32747 7.48631 7.56136 8.01062 8.28568 8.68929 8.77083 9.04818 9.80442 10.38603 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.008988 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.598666 B = 3114.650692 C = 4352.183904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.090 4.090 3 C -0.264 4.264 4 C 0.011 3.989 5 C -0.150 4.150 6 C 0.223 3.777 7 C -0.417 4.417 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.745 5.745 11 Si 0.910 3.090 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.263 1.263 15 N -0.447 5.447 16 C 0.176 3.824 17 C 0.002 3.998 18 C -0.134 4.134 19 C -0.134 4.134 20 N -0.386 5.386 21 C -0.004 4.004 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.273 0.727 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 -2.213 -0.001 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.284 4.284 4 C -0.009 4.009 5 C -0.250 4.250 6 C 0.094 3.906 7 C -0.451 4.451 8 H 0.101 0.899 9 C -0.153 4.153 10 N -0.368 5.368 11 Si 0.735 3.265 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.187 1.187 15 N -0.168 5.168 16 C -0.080 4.080 17 C -0.018 4.018 18 C -0.192 4.192 19 C -0.192 4.192 20 N -0.066 5.066 21 C -0.123 4.123 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.275 -2.969 -0.012 6.942 hybrid contribution -0.189 1.053 -0.003 1.070 sum -6.465 -1.916 -0.015 6.743 Atomic orbital electron populations 1.20532 0.91697 1.01673 1.01272 1.18965 0.94926 0.92488 1.03058 1.20367 0.93312 0.95940 1.18815 1.20318 0.93284 0.95158 0.92171 1.19212 0.92998 0.85748 1.27029 1.18376 0.88372 0.88957 0.94888 1.18511 0.88873 0.93489 1.44256 0.89874 1.25908 1.00259 0.95497 0.93640 1.70155 1.22685 1.12110 1.31897 0.86280 0.80276 0.80883 0.79079 1.19559 1.20264 1.18670 1.70804 1.15781 1.09017 1.21214 1.23414 0.84586 0.90434 1.09563 1.19288 0.98695 0.87097 0.96719 1.21725 1.02931 0.98366 0.96196 1.21727 1.02920 0.98358 0.96221 1.42165 1.04118 1.07787 1.52549 1.20701 0.82478 0.98002 1.11076 0.92153 0.92582 0.92067 0.87693 0.86309 0.91600 0.91851 0.93146 0.90884 0.93382 0.93150 0.93400 0.90878 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.00 36.01 0.36 -0.95 16 2 C -0.09 -1.70 5.85 -104.95 -0.61 -2.31 16 3 C -0.26 -5.31 9.82 -38.94 -0.38 -5.69 16 4 C 0.01 0.24 10.12 -39.26 -0.40 -0.16 16 5 C -0.15 -3.87 6.78 -83.62 -0.57 -4.44 16 6 C 0.22 6.22 6.71 -84.45 -0.57 5.66 16 7 C -0.42 -11.33 9.33 -38.31 -0.36 -11.69 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 C 0.07 1.79 5.49 -17.33 -0.10 1.69 16 10 N -0.74 -20.01 11.94 55.53 0.66 -19.35 16 11 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 15 N -0.45 -12.17 9.40 -7.89 -0.07 -12.24 16 16 C 0.18 4.19 6.45 -154.30 -1.00 3.19 16 17 C 0.00 0.05 3.32 -91.77 -0.30 -0.26 16 18 C -0.13 -2.31 9.17 37.16 0.34 -1.97 16 19 C -0.13 -2.32 9.17 37.16 0.34 -1.97 16 20 N -0.39 -9.21 2.95 -57.52 -0.17 -9.38 16 21 C 0.00 -0.09 10.30 -16.45 -0.17 -0.26 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 24 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 25 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 26 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 27 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.06 1.05 7.24 -51.93 -0.38 0.68 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.13 2.22 7.41 -52.49 -0.39 1.83 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -30.27 297.74 -8.48 -38.76 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.96 Total: 2.95 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.41 Total: -19.16 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.42 Total: -40.98 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.27 -8.48 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.622 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds