Wall clock time and date at job start Mon Mar 30 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40143 * 119.80752 * 2 1 4 4 C 1.38032 * 119.41977 * 179.97438 * 3 2 1 5 5 C 1.39293 * 119.14674 * 359.97438 * 4 3 2 6 6 C 1.41491 * 133.63948 * 179.97438 * 5 4 3 7 7 C 1.40270 * 126.60001 * 0.05056 * 6 5 4 8 8 H 1.07991 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.39610 * 119.99672 * 179.97438 * 7 6 5 10 10 N 1.31161 * 119.99920 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00143 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47102 * 89.99781 * 11 9 7 13 13 H 1.48495 * 109.47373 * 210.00121 * 11 9 7 14 14 H 1.48499 * 109.47043 * 330.00043 * 11 9 7 15 15 N 1.35046 * 106.79138 * 180.02562 * 6 5 4 16 16 C 1.30370 * 109.83613 * 0.02562 * 15 6 5 17 17 C 1.50703 * 124.94815 * 180.02562 * 16 15 6 18 18 C 1.53002 * 109.46966 * 60.02579 * 17 16 15 19 19 C 1.53000 * 109.46912 * 300.02667 * 17 16 15 20 20 N 1.36369 * 110.10186 * 0.26190 * 16 15 6 21 21 C 1.35320 * 119.80922 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47296 * 89.99858 * 1 2 3 23 23 H 1.08996 * 109.47120 * 210.00158 * 1 2 3 24 24 H 1.09007 * 109.46915 * 330.00068 * 1 2 3 25 25 H 1.08008 * 120.29360 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.42702 * 180.02562 * 4 3 2 27 27 H 0.97000 * 119.99767 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.47152 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46986 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.47075 * 299.99352 * 18 17 16 31 31 H 1.08996 * 109.47407 * 60.00310 * 18 17 16 32 32 H 1.09004 * 109.46724 * 180.02562 * 19 17 16 33 33 H 1.09001 * 109.47194 * 299.99742 * 19 17 16 34 34 H 1.08992 * 109.47399 * 59.99914 * 19 17 16 35 35 H 1.07999 * 119.66443 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2036 1.2160 0.0000 4 6 3.5839 1.2067 0.0005 5 6 4.2541 -0.0144 0.0016 6 6 5.6216 -0.3778 0.0019 7 6 6.7190 0.4958 0.0021 8 1 6.5591 1.5638 0.0017 9 6 8.0181 -0.0155 0.0030 10 7 8.2123 -1.3127 0.0041 11 14 9.4797 1.1477 0.0025 12 1 9.8665 1.4571 1.4025 13 1 10.6223 0.5068 -0.6966 14 1 9.1122 2.4041 -0.6986 15 7 5.6666 -1.7275 0.0025 16 6 4.4557 -2.2105 0.0021 17 6 4.1115 -3.6777 0.0031 18 6 4.6958 -4.3377 1.2537 19 6 4.6987 -4.3401 -1.2449 20 7 3.5459 -1.1947 -0.0047 21 6 2.1797 -1.1742 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5139 25 1 1.6652 2.1523 0.0004 26 1 4.1372 2.1342 0.0010 27 1 9.1149 -1.6679 0.0043 28 1 3.0280 -3.7968 0.0019 29 1 4.4473 -5.3990 1.2542 30 1 5.7793 -4.2188 1.2547 31 1 4.2775 -3.8659 2.1427 32 1 4.4494 -5.4013 -1.2443 33 1 4.2825 -3.8699 -2.1358 34 1 5.7821 -4.2211 -1.2437 35 1 1.6311 -2.1045 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:43 Heat of formation + Delta-G solvation = 42.688304 kcal Electronic energy + Delta-G solvation = -17465.016628 eV Core-core repulsion = 14848.499342 eV Total energy + Delta-G solvation = -2616.517286 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.75428 -38.25150 -36.32367 -35.11007 -33.36831 -32.64522 -29.69984 -27.99170 -27.55415 -26.47269 -24.15640 -22.89945 -22.15724 -20.33669 -19.18206 -17.30871 -17.27067 -16.57750 -16.18827 -15.82898 -15.49573 -14.83102 -14.70808 -14.52058 -14.25148 -13.76273 -13.25064 -13.03278 -12.98217 -12.97171 -12.76458 -12.48621 -12.29628 -12.18200 -11.98230 -11.88909 -11.82161 -11.69729 -11.25966 -10.68044 -10.16745 -9.43584 -8.37321 -8.29854 -5.95807 0.33863 0.77984 1.40213 1.45002 1.54493 2.26103 2.39005 2.55348 2.82064 3.63842 3.73172 3.93208 4.01491 4.21062 4.31187 4.37255 4.49725 4.53116 4.66161 4.81381 4.82960 4.90120 4.92435 4.99816 5.00669 5.06255 5.24157 5.37101 5.40627 5.43762 5.54991 5.65512 5.73514 5.81217 6.19409 6.40311 6.85533 6.91598 7.20669 7.94875 8.56766 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.008988 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.598666 B = 3114.650692 C = 4352.183904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.099 4.099 3 C -0.224 4.224 4 C -0.031 4.031 5 C -0.171 4.171 6 C 0.171 3.829 7 C -0.463 4.463 8 H 0.082 0.918 9 C 0.024 3.976 10 N -0.793 5.793 11 Si 0.987 3.013 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.257 1.257 15 N -0.478 5.478 16 C 0.151 3.849 17 C 0.003 3.997 18 C -0.125 4.125 19 C -0.125 4.125 20 N -0.387 5.387 21 C -0.013 4.013 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.125 0.875 27 H 0.276 0.724 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 -2.317 -0.002 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.244 4.244 4 C -0.051 4.051 5 C -0.273 4.273 6 C 0.041 3.959 7 C -0.497 4.497 8 H 0.100 0.900 9 C -0.193 4.193 10 N -0.419 5.419 11 Si 0.808 3.192 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.181 1.181 15 N -0.199 5.199 16 C -0.105 4.105 17 C -0.017 4.017 18 C -0.183 4.183 19 C -0.183 4.183 20 N -0.065 5.065 21 C -0.131 4.131 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.159 0.841 26 H 0.143 0.857 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.597 -3.086 -0.014 10.080 hybrid contribution 0.375 1.135 -0.002 1.195 sum -9.222 -1.951 -0.016 9.426 Atomic orbital electron populations 1.20615 0.87294 1.03690 1.03023 1.19670 0.97998 0.91297 1.01341 1.21022 0.92355 0.98277 1.12725 1.20570 0.94791 0.94585 0.95170 1.19555 0.92922 0.87535 1.27257 1.18823 0.89895 0.89723 0.97425 1.18745 0.90129 0.93524 1.47352 0.90026 1.26783 1.02709 0.97141 0.92709 1.70273 1.23246 1.13972 1.34389 0.85138 0.76349 0.78519 0.79211 1.18958 1.19459 1.18100 1.70661 1.18245 1.09241 1.21784 1.24292 0.83947 0.92499 1.09744 1.19542 1.00519 0.83985 0.97694 1.21651 1.00567 1.00805 0.95306 1.21652 1.00558 1.00797 0.95332 1.42476 1.05576 1.07238 1.51217 1.21565 0.81116 1.00558 1.09869 0.90323 0.90437 0.90370 0.84150 0.85722 0.91446 0.88835 0.88885 0.94220 0.94088 0.88887 0.94120 0.94214 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.00 71.24 0.71 -1.23 16 2 C -0.10 -3.32 5.85 -20.08 -0.12 -3.44 16 3 C -0.22 -8.28 9.82 22.68 0.22 -8.05 16 4 C -0.03 -1.41 10.12 22.47 0.23 -1.19 16 5 C -0.17 -9.09 6.78 39.29 0.27 -8.83 16 6 C 0.17 10.17 6.71 39.94 0.27 10.43 16 7 C -0.46 -27.01 9.33 23.10 0.22 -26.79 16 8 H 0.08 4.49 7.84 -2.92 -0.02 4.46 16 9 C 0.02 1.29 5.49 85.12 0.47 1.76 16 10 N -0.79 -45.73 11.94 21.78 0.26 -45.47 16 11 Si 0.99 41.13 29.56 68.60 2.03 43.16 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 14 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 15 N -0.48 -27.66 9.40 -178.88 -1.68 -29.35 16 16 C 0.15 7.35 6.45 137.74 0.89 8.24 16 17 C 0.00 0.10 3.32 -11.54 -0.04 0.07 16 18 C -0.13 -4.23 9.17 71.98 0.66 -3.57 16 19 C -0.13 -4.24 9.17 71.98 0.66 -3.58 16 20 N -0.39 -18.42 2.95 -335.90 -0.99 -19.41 16 21 C -0.01 -0.50 10.30 83.27 0.86 0.36 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.08 1.41 8.07 -2.39 -0.02 1.40 16 24 H 0.08 1.49 8.09 -2.38 -0.02 1.47 16 25 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 26 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 27 H 0.28 14.47 8.30 -92.71 -0.77 13.70 16 28 H 0.09 2.79 7.24 -2.39 -0.02 2.78 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.17 4.91 7.41 -2.91 -0.02 4.89 16 Total: -1.00 -72.29 297.74 5.97 -66.31 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.07 Total: 20.59 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 5.29 Total: -35.83 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.41 Total: -94.23 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -72.29 5.97 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.003 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds