Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46964 * 2 1 4 4 C 1.53011 * 109.46534 * 240.00299 * 2 1 3 5 5 C 1.50692 * 109.47445 * 120.00588 * 2 1 3 6 6 N 1.30748 * 125.42083 * 239.99955 * 5 2 1 7 7 C 1.33496 * 109.90930 * 179.97438 * 6 5 2 8 8 C 1.38107 * 107.70158 * 359.97438 * 7 6 5 9 9 C 1.41245 * 132.66590 * 179.97438 * 8 7 6 10 10 C 1.35427 * 119.81014 * 180.02562 * 9 8 7 11 11 C 1.46685 * 118.98052 * 359.97438 * 10 9 8 12 12 C 1.41213 * 120.37472 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99920 * 156.03662 * 12 11 10 14 14 C 1.39548 * 120.00278 * 336.03980 * 12 11 10 15 15 N 1.31078 * 119.99719 * 342.88659 * 14 12 11 16 16 Si 1.86799 * 119.99948 * 162.88475 * 14 12 11 17 17 H 1.48497 * 109.46920 * 60.00610 * 16 14 12 18 18 H 1.48506 * 109.46775 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47215 * 299.99911 * 16 14 12 20 20 C 1.39244 * 119.25097 * 0.02562 * 11 10 9 21 21 N 1.36154 * 120.16256 * 359.97438 * 20 11 10 22 22 H 1.09005 * 109.46871 * 299.99696 * 1 2 3 23 23 H 1.08996 * 109.47464 * 59.99637 * 1 2 3 24 24 H 1.09006 * 109.47397 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47132 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47197 * 299.99936 * 3 2 1 27 27 H 1.08995 * 109.47109 * 60.00629 * 3 2 1 28 28 H 1.08997 * 109.46931 * 299.99587 * 4 2 1 29 29 H 1.08996 * 109.47192 * 59.99898 * 4 2 1 30 30 H 1.09000 * 109.46322 * 179.97438 * 4 2 1 31 31 H 1.07996 * 126.14882 * 179.97438 * 7 6 5 32 32 H 1.08006 * 120.09861 * 0.02651 * 9 8 7 33 33 H 1.07999 * 120.51145 * 180.02562 * 10 9 8 34 34 H 0.96998 * 120.00189 * 179.97438 * 15 14 12 35 35 H 1.08001 * 119.91805 * 180.27451 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0324 -0.7105 1.2303 6 7 2.7873 -0.1799 2.1566 7 6 3.0474 -1.0837 3.1040 8 6 2.4136 -2.2583 2.7491 9 6 2.3393 -3.5288 3.3618 10 6 1.6280 -4.5195 2.7731 11 6 0.9459 -4.2469 1.5034 12 6 0.1966 -5.2586 0.8638 13 1 -0.5949 -4.9929 0.1787 14 6 0.4787 -6.6016 1.1169 15 7 1.6209 -6.9395 1.6641 16 14 -0.7714 -7.9178 0.6761 17 1 -1.0395 -7.8766 -0.7839 18 1 -0.2350 -9.2528 1.0440 19 1 -2.0334 -7.6702 1.4184 20 6 1.0466 -2.9796 0.9354 21 7 1.7706 -2.0075 1.5556 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6766 -1.7489 -1.2494 29 1 1.6765 -0.2074 -2.1393 30 1 3.1299 -0.7208 -1.2496 31 1 3.6458 -0.9249 3.9889 32 1 2.8482 -3.7097 4.2971 33 1 1.5632 -5.4951 3.2319 34 1 1.8169 -7.8729 1.8404 35 1 0.5451 -2.7657 0.0031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = 40.610134 kcal Electronic energy + Delta-G solvation = -17555.595042 eV Core-core repulsion = 14938.987639 eV Total energy + Delta-G solvation = -2616.607402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -43.11967 -38.20023 -37.28327 -35.34818 -33.47795 -31.60571 -28.66093 -28.18812 -28.00808 -27.10011 -23.73538 -23.16137 -22.42717 -20.50785 -18.97459 -17.55853 -17.22430 -16.91851 -16.35134 -15.80271 -15.56355 -15.22003 -14.84706 -14.48463 -14.27395 -13.70160 -13.35279 -13.14348 -12.98711 -12.90521 -12.83427 -12.60693 -12.41213 -12.16612 -11.98132 -11.84632 -11.82389 -11.46694 -11.20795 -11.05893 -10.84490 -9.67207 -8.85049 -8.05563 -6.47121 0.49225 0.82364 1.39168 1.48576 1.52313 2.13926 2.32096 2.36103 2.56836 3.36204 3.54466 3.95348 4.08101 4.08783 4.24448 4.43359 4.44934 4.53963 4.71666 4.75912 4.81558 4.83862 4.85145 4.97241 4.99812 5.09575 5.17146 5.20035 5.39301 5.41849 5.52826 5.62601 5.70210 6.03092 6.11267 6.25696 6.54442 6.71911 6.99042 7.33525 8.16922 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.007108 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.529034 B = 3938.028234 C = 4614.499675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.027 3.973 3 C -0.112 4.112 4 C -0.138 4.138 5 C 0.108 3.892 6 N -0.484 5.484 7 C -0.069 4.069 8 C -0.049 4.049 9 C -0.115 4.115 10 C -0.103 4.103 11 C 0.080 3.920 12 C -0.472 4.472 13 H 0.087 0.913 14 C 0.041 3.959 15 N -0.817 5.817 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.189 4.189 21 N -0.305 5.305 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.186 0.814 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.296 0.704 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 4.272 -2.677 5.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 C -0.170 4.170 4 C -0.196 4.196 5 C -0.145 4.145 6 N -0.199 5.199 7 C -0.226 4.226 8 C -0.164 4.164 9 C -0.135 4.135 10 C -0.125 4.125 11 C 0.076 3.924 12 C -0.501 4.501 13 H 0.105 0.895 14 C -0.176 4.176 15 N -0.442 5.442 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.310 4.310 21 N 0.030 4.970 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.203 0.797 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.107 0.893 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.923 4.936 -2.776 5.981 hybrid contribution -0.445 -1.721 0.197 1.789 sum -2.368 3.215 -2.579 4.753 Atomic orbital electron populations 1.21899 0.93251 1.01616 1.02761 1.18945 0.95571 0.95399 0.87593 1.21544 1.00821 0.92363 1.02226 1.21903 1.00616 1.00019 0.97065 1.23459 1.07484 0.81515 1.02053 1.69620 1.15530 1.31903 1.02888 1.22563 1.08975 0.88650 1.02403 1.19817 1.06547 0.98254 0.91789 1.20472 1.02023 0.90014 1.00968 1.22605 0.96874 0.98375 0.94625 1.18685 0.91202 0.91219 0.91306 1.19553 1.15832 0.90800 1.23906 0.89485 1.26773 0.96833 1.01788 0.92246 1.69910 1.21346 1.21560 1.31391 0.85124 0.78204 0.75822 0.79943 1.18268 1.19000 1.18276 1.21412 1.15884 0.90437 1.03305 1.42179 1.29696 1.09645 1.15431 0.93410 0.88878 0.94020 0.93259 0.89633 0.93097 0.94105 0.88850 0.93653 0.79693 0.83339 0.85007 0.89331 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.38 71.98 0.60 -3.63 16 2 C 0.03 0.91 0.84 -52.93 -0.04 0.87 16 3 C -0.11 -3.22 7.93 71.98 0.57 -2.65 16 4 C -0.14 -4.37 8.39 71.99 0.60 -3.77 16 5 C 0.11 4.69 6.27 137.66 0.86 5.55 16 6 N -0.48 -21.60 10.44 -184.99 -1.93 -23.53 16 7 C -0.07 -3.02 12.01 84.41 1.01 -2.01 16 8 C -0.05 -2.31 6.76 38.90 0.26 -2.05 16 9 C -0.12 -5.20 10.07 22.36 0.23 -4.97 16 10 C -0.10 -5.03 8.86 23.83 0.21 -4.82 16 11 C 0.08 4.10 5.69 -20.10 -0.11 3.99 16 12 C -0.47 -23.33 9.04 23.32 0.21 -23.12 16 13 H 0.09 4.10 7.90 -2.91 -0.02 4.08 16 14 C 0.04 1.85 5.19 85.12 0.44 2.29 16 15 N -0.82 -38.71 10.89 21.76 0.24 -38.47 16 16 Si 0.99 34.44 29.59 68.60 2.03 36.47 16 17 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 18 H -0.27 -8.75 7.11 99.48 0.71 -8.05 16 19 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 20 C -0.19 -9.27 9.15 84.26 0.77 -8.50 16 21 N -0.30 -14.57 2.93 -333.86 -0.98 -15.55 16 22 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.43 6.05 -2.38 -0.01 1.42 16 25 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.45 6.07 -2.39 -0.01 1.44 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.19 6.71 8.06 -2.91 -0.02 6.69 16 32 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 33 H 0.13 6.41 6.27 -2.91 -0.02 6.39 16 34 H 0.30 12.57 8.30 -92.71 -0.77 11.80 16 35 H 0.14 6.47 5.51 -2.91 -0.02 6.45 16 Total: -1.00 -58.28 286.97 6.06 -52.23 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 1.08 Total: 31.69 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 5.62 Total: -42.83 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.67 Total: -77.56 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -58.28 6.06 -52.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.836 kcal (2) G-P(sol) polarization free energy of solvation -58.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds