Wall clock time and date at job start Mon Mar 30 2020 07:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 120.11632 * 2 1 4 4 C 1.37936 * 119.76947 * 180.37485 * 3 2 1 5 5 C 1.38904 * 120.54721 * 0.07674 * 4 3 2 6 6 C 1.37669 * 119.68185 * 359.75738 * 5 4 3 7 7 C 1.37936 * 120.11268 * 180.27203 * 2 1 3 8 8 C 1.50629 * 122.56369 * 180.44614 * 6 5 4 9 9 C 1.53010 * 109.25064 * 102.58473 * 8 6 5 10 10 C 1.53000 * 109.25622 * 222.04802 * 8 6 5 11 11 C 1.52733 * 110.59137 * 342.30111 * 8 6 5 12 12 C 1.53321 * 108.38493 * 51.08659 * 11 8 6 13 13 C 1.50637 * 117.75340 * 179.60016 * 5 4 3 14 14 H 1.08997 * 109.21589 * 282.72587 * 13 5 4 15 15 C 1.50694 * 109.25264 * 42.17211 * 13 5 4 16 16 H 1.07996 * 120.00193 * 36.16535 * 15 13 5 17 17 C 1.37879 * 120.00024 * 216.16839 * 15 13 5 18 18 N 1.31513 * 120.00099 * 5.73802 * 17 15 13 19 19 Si 1.86802 * 119.99924 * 185.74038 * 17 15 13 20 20 H 1.48500 * 109.47033 * 59.99786 * 19 17 15 21 21 H 1.48498 * 109.46826 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47193 * 299.99632 * 19 17 15 23 23 H 1.08999 * 109.46883 * 269.72802 * 1 2 3 24 24 H 1.08997 * 109.46975 * 29.72071 * 1 2 3 25 25 H 1.08999 * 109.47433 * 149.72675 * 1 2 3 26 26 H 1.07994 * 120.11265 * 0.35324 * 3 2 1 27 27 H 1.07999 * 119.72371 * 180.02562 * 4 3 2 28 28 H 1.08000 * 119.72899 * 359.63674 * 7 2 1 29 29 H 1.08990 * 109.46865 * 59.99971 * 9 8 6 30 30 H 1.09003 * 109.46817 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46640 * 299.99453 * 9 8 6 32 32 H 1.08996 * 109.47058 * 59.99840 * 10 8 6 33 33 H 1.09001 * 109.47408 * 180.02562 * 10 8 6 34 34 H 1.09008 * 109.46949 * 300.00436 * 10 8 6 35 35 H 1.09004 * 109.68306 * 170.81764 * 11 8 6 36 36 H 1.09005 * 109.67973 * 291.32961 * 11 8 6 37 37 H 1.09005 * 109.68042 * 49.84141 * 12 11 8 38 38 H 1.09001 * 109.68220 * 170.35626 * 12 11 8 39 39 H 0.96993 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5801 1.1877 -0.0078 5 6 4.2788 -0.0128 -0.0173 6 6 3.5881 -1.2037 -0.0139 7 6 2.1991 -1.1932 -0.0057 8 6 4.2794 -2.5419 -0.0138 9 6 4.2349 -3.1326 1.3970 10 6 3.5555 -3.4839 -0.9780 11 6 5.7349 -2.3947 -0.4524 12 6 6.3835 -1.2880 0.3876 13 6 5.7837 0.0515 -0.0348 14 1 6.1207 0.2945 -1.0425 15 6 6.2462 1.1251 0.9161 16 1 5.7145 1.2929 1.8410 17 6 7.3483 1.8933 0.6054 18 7 7.9278 1.7673 -0.5684 19 14 8.0182 3.1129 1.8517 20 1 8.4209 2.3898 3.0847 21 1 9.1983 3.8085 1.2785 22 1 6.9682 4.1094 2.1829 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5181 26 1 1.6646 2.1334 0.0058 27 1 4.1213 2.1223 -0.0074 28 1 1.6565 -2.1270 -0.0042 29 1 3.1972 -3.2574 1.7060 30 1 4.7348 -4.1012 1.4013 31 1 4.7416 -2.4596 2.0887 32 1 3.5768 -3.0618 -1.9827 33 1 4.0528 -4.4538 -0.9803 34 1 2.5209 -3.6070 -0.6574 35 1 6.2634 -3.3345 -0.2925 36 1 5.7748 -2.1261 -1.5081 37 1 6.1821 -1.4635 1.4444 38 1 7.4598 -1.2796 0.2155 39 1 8.7032 2.3075 -0.7869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:45 Heat of formation + Delta-G solvation = -10.301307 kcal Electronic energy + Delta-G solvation = -18128.980868 eV Core-core repulsion = 15613.706123 eV Total energy + Delta-G solvation = -2515.274745 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.76417 -36.42406 -34.31448 -31.87697 -30.84187 -29.24259 -27.23291 -26.87538 -25.63614 -23.33349 -22.09381 -21.07105 -19.80083 -17.56847 -16.40014 -15.44510 -14.85173 -14.53644 -14.34906 -13.58655 -13.45919 -13.30322 -13.01509 -12.61830 -12.36083 -12.11812 -11.96449 -11.64967 -11.55751 -11.30654 -11.21087 -11.00585 -10.89117 -10.69538 -10.51674 -10.37191 -9.99357 -9.91796 -9.53054 -8.98020 -8.89114 -8.49342 -7.92570 -7.44977 -6.03792 -4.06205 2.19130 2.25344 3.30590 3.35646 3.38772 4.40160 4.59055 5.15317 5.24120 5.27366 5.47812 5.50040 5.55022 5.73401 5.85841 5.88233 5.93428 5.98000 6.07449 6.11688 6.18111 6.21810 6.29447 6.38233 6.44069 6.54516 6.58466 6.68518 6.80852 6.88503 6.90467 7.09001 7.19088 7.29109 7.34855 7.55237 7.74374 7.85154 7.91954 8.00181 8.42229 9.02277 9.56151 11.04436 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.008700 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.620125 B = 3217.774904 C = 4101.669040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.135 4.135 4 C -0.099 4.099 5 C -0.033 4.033 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.019 4.019 9 C -0.135 4.135 10 C -0.137 4.137 11 C -0.111 4.111 12 C -0.102 4.102 13 C 0.063 3.937 14 H 0.073 0.927 15 C -0.506 4.506 16 H 0.054 0.946 17 C 0.065 3.935 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -6.925 0.260 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.121 4.121 3 C -0.153 4.153 4 C -0.117 4.117 5 C -0.033 4.033 6 C -0.083 4.083 7 C -0.144 4.144 8 C -0.019 4.019 9 C -0.192 4.192 10 C -0.195 4.195 11 C -0.149 4.149 12 C -0.140 4.140 13 C 0.044 3.956 14 H 0.091 0.909 15 C -0.544 4.544 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.256 -6.849 0.145 11.516 hybrid contribution 0.401 0.785 0.691 1.120 sum -8.855 -6.063 0.836 10.765 Atomic orbital electron populations 1.20646 0.92469 1.01624 1.01241 1.19575 0.94948 0.93565 1.03969 1.20904 0.94678 0.96588 1.03108 1.21357 0.92817 0.99270 0.98226 1.20503 0.98563 0.90940 0.93325 1.19505 0.92687 0.94106 1.02004 1.20844 0.93777 0.96549 1.03226 1.19316 0.95439 0.91902 0.95208 1.21911 1.00962 1.00031 0.96326 1.21949 0.99686 0.98536 0.99293 1.21724 0.93681 0.99119 1.00369 1.21702 0.99388 0.94917 0.98011 1.17961 0.85145 0.92823 0.99629 0.90885 1.20997 1.12009 1.16732 1.04641 0.92736 1.24968 0.96917 0.96763 0.95016 1.69895 1.21970 1.41089 1.20110 0.86706 0.78535 0.81323 0.81774 1.20213 1.21318 1.20226 0.92261 0.92370 0.92503 0.87497 0.85489 0.87480 0.93379 0.93135 0.91907 0.92783 0.93056 0.92958 0.93226 0.92411 0.93235 0.92652 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.02 36.01 0.36 -0.98 16 2 C -0.12 -2.05 5.87 -104.72 -0.62 -2.66 16 3 C -0.13 -2.49 9.71 -39.68 -0.39 -2.87 16 4 C -0.10 -2.13 9.04 -39.45 -0.36 -2.48 16 5 C -0.03 -0.74 5.42 -104.61 -0.57 -1.30 16 6 C -0.08 -1.60 4.70 -104.62 -0.49 -2.09 16 7 C -0.13 -2.19 8.56 -39.45 -0.34 -2.53 16 8 C -0.02 -0.32 0.63 -155.83 -0.10 -0.41 16 9 C -0.14 -2.10 8.16 37.16 0.30 -1.80 16 10 C -0.14 -1.96 7.95 37.16 0.30 -1.66 16 11 C -0.11 -2.05 4.68 -26.70 -0.13 -2.18 16 12 C -0.10 -2.25 5.19 -26.70 -0.14 -2.39 16 13 C 0.06 1.53 2.34 -93.10 -0.22 1.32 16 14 H 0.07 2.02 7.20 -51.93 -0.37 1.64 16 15 C -0.51 -13.52 6.88 -34.44 -0.24 -13.75 16 16 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -25.34 12.75 55.43 0.71 -24.64 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.13 2.90 7.27 -52.49 -0.38 2.52 16 28 H 0.11 1.62 6.34 -52.49 -0.33 1.29 16 29 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.08 6.47 -51.93 -0.34 0.74 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.68 6.41 -51.92 -0.33 0.35 16 35 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.05 1.08 6.26 -51.93 -0.32 0.76 16 38 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -27.69 303.51 -8.71 -36.40 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.26 Total: 1.73 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -2.71 Total: -34.13 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.71 Total: -24.64 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.69 -8.71 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.096 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds