Wall clock time and date at job start Mon Mar 30 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38266 * 120.11632 * 2 1 4 4 C 1.37936 * 119.76947 * 180.37485 * 3 2 1 5 5 C 1.38904 * 120.54721 * 0.07674 * 4 3 2 6 6 C 1.37669 * 119.68185 * 359.75738 * 5 4 3 7 7 C 1.37936 * 120.11268 * 180.27203 * 2 1 3 8 8 C 1.50629 * 122.56369 * 180.44614 * 6 5 4 9 9 C 1.53010 * 109.25064 * 102.58473 * 8 6 5 10 10 C 1.53000 * 109.25622 * 222.04802 * 8 6 5 11 11 C 1.52733 * 110.59137 * 342.30111 * 8 6 5 12 12 C 1.53321 * 108.38493 * 51.08659 * 11 8 6 13 13 C 1.50637 * 117.75340 * 179.60016 * 5 4 3 14 14 H 1.08997 * 109.21589 * 282.72587 * 13 5 4 15 15 C 1.50694 * 109.25264 * 42.17211 * 13 5 4 16 16 H 1.07996 * 120.00193 * 36.16535 * 15 13 5 17 17 C 1.37879 * 120.00024 * 216.16839 * 15 13 5 18 18 N 1.31513 * 120.00099 * 5.73802 * 17 15 13 19 19 Si 1.86802 * 119.99924 * 185.74038 * 17 15 13 20 20 H 1.48500 * 109.47033 * 59.99786 * 19 17 15 21 21 H 1.48498 * 109.46826 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47193 * 299.99632 * 19 17 15 23 23 H 1.08999 * 109.46883 * 269.72802 * 1 2 3 24 24 H 1.08997 * 109.46975 * 29.72071 * 1 2 3 25 25 H 1.08999 * 109.47433 * 149.72675 * 1 2 3 26 26 H 1.07994 * 120.11265 * 0.35324 * 3 2 1 27 27 H 1.07999 * 119.72371 * 180.02562 * 4 3 2 28 28 H 1.08000 * 119.72899 * 359.63674 * 7 2 1 29 29 H 1.08990 * 109.46865 * 59.99971 * 9 8 6 30 30 H 1.09003 * 109.46817 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46640 * 299.99453 * 9 8 6 32 32 H 1.08996 * 109.47058 * 59.99840 * 10 8 6 33 33 H 1.09001 * 109.47408 * 180.02562 * 10 8 6 34 34 H 1.09008 * 109.46949 * 300.00436 * 10 8 6 35 35 H 1.09004 * 109.68306 * 170.81764 * 11 8 6 36 36 H 1.09005 * 109.67973 * 291.32961 * 11 8 6 37 37 H 1.09005 * 109.68042 * 49.84141 * 12 11 8 38 38 H 1.09001 * 109.68220 * 170.35626 * 12 11 8 39 39 H 0.96993 * 119.99915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2008 1.1960 0.0000 4 6 3.5801 1.1877 -0.0078 5 6 4.2788 -0.0128 -0.0173 6 6 3.5881 -1.2037 -0.0139 7 6 2.1991 -1.1932 -0.0057 8 6 4.2794 -2.5419 -0.0138 9 6 4.2349 -3.1326 1.3970 10 6 3.5555 -3.4839 -0.9780 11 6 5.7349 -2.3947 -0.4524 12 6 6.3835 -1.2880 0.3876 13 6 5.7837 0.0515 -0.0348 14 1 6.1207 0.2945 -1.0425 15 6 6.2462 1.1251 0.9161 16 1 5.7145 1.2929 1.8410 17 6 7.3483 1.8933 0.6054 18 7 7.9278 1.7673 -0.5684 19 14 8.0182 3.1129 1.8517 20 1 8.4209 2.3898 3.0847 21 1 9.1983 3.8085 1.2785 22 1 6.9682 4.1094 2.1829 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5181 26 1 1.6646 2.1334 0.0058 27 1 4.1213 2.1223 -0.0074 28 1 1.6565 -2.1270 -0.0042 29 1 3.1972 -3.2574 1.7060 30 1 4.7348 -4.1012 1.4013 31 1 4.7416 -2.4596 2.0887 32 1 3.5768 -3.0618 -1.9827 33 1 4.0528 -4.4538 -0.9803 34 1 2.5209 -3.6070 -0.6574 35 1 6.2634 -3.3345 -0.2925 36 1 5.7748 -2.1261 -1.5081 37 1 6.1821 -1.4635 1.4444 38 1 7.4598 -1.2796 0.2155 39 1 8.7032 2.3075 -0.7869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:44 Heat of formation + Delta-G solvation = -22.863586 kcal Electronic energy + Delta-G solvation = -18129.525609 eV Core-core repulsion = 15613.706123 eV Total energy + Delta-G solvation = -2515.819486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25862 -37.84782 -36.07722 -33.70305 -32.34706 -30.71534 -28.86059 -28.04848 -27.13675 -25.10264 -23.58252 -22.62597 -21.40527 -19.04256 -18.46794 -17.12078 -16.28677 -16.22159 -15.94078 -15.06364 -14.75889 -14.67339 -14.37303 -14.31775 -13.96060 -13.46868 -13.32186 -13.17166 -12.83211 -12.80432 -12.65559 -12.50198 -12.45344 -12.42595 -12.17837 -11.86790 -11.56709 -11.55045 -11.23326 -10.82140 -10.62010 -10.52344 -9.40517 -9.02252 -8.13561 -6.22636 0.69791 0.74837 1.37152 1.38436 1.46408 2.39840 3.06848 3.14505 3.82717 3.92557 4.13482 4.21948 4.33471 4.37777 4.50270 4.63976 4.67175 4.71481 4.82088 4.86993 4.91492 4.93970 4.99367 5.06646 5.11973 5.16937 5.22815 5.26005 5.28030 5.40462 5.43320 5.56499 5.57981 5.59651 5.68058 5.84843 5.88675 5.97197 6.20359 6.35564 6.48408 6.91925 7.41792 8.93546 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.008700 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.620125 B = 3217.774904 C = 4101.669040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.111 4.111 3 C -0.139 4.139 4 C -0.125 4.125 5 C -0.071 4.071 6 C -0.085 4.085 7 C -0.124 4.124 8 C -0.021 4.021 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.105 4.105 12 C -0.096 4.096 13 C 0.065 3.935 14 H 0.027 0.973 15 C -0.512 4.512 16 H 0.044 0.956 17 C 0.014 3.986 18 N -0.927 5.927 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.027 0.973 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.205 -8.879 1.016 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.143 4.143 5 C -0.072 4.072 6 C -0.085 4.085 7 C -0.142 4.142 8 C -0.021 4.021 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.142 4.142 12 C -0.134 4.134 13 C 0.046 3.954 14 H 0.045 0.955 15 C -0.550 4.550 16 H 0.062 0.938 17 C -0.184 4.184 18 N -0.567 5.567 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.061 -8.805 0.909 14.960 hybrid contribution 1.182 1.396 0.443 1.882 sum -10.879 -7.409 1.352 13.231 Atomic orbital electron populations 1.20722 0.88885 1.03358 1.02761 1.20106 0.97466 0.92566 1.00997 1.21124 0.93274 0.98645 1.02680 1.21245 0.94510 0.97965 1.00579 1.20342 0.97061 0.92773 0.96987 1.19808 0.93976 0.94007 1.00744 1.21211 0.92846 0.98234 1.01899 1.19406 0.94006 0.91568 0.97104 1.21874 1.02131 1.00362 0.94436 1.21899 1.00662 0.98470 0.97808 1.21654 0.95374 0.98504 0.98668 1.21519 0.97811 0.95424 0.98626 1.17772 0.87593 0.93440 0.96558 0.95492 1.21244 1.11822 1.17414 1.04536 0.93790 1.25706 0.97305 0.98706 0.96688 1.70033 1.22512 1.42339 1.21784 0.85747 0.77959 0.79244 0.79599 1.19563 1.20797 1.19703 0.90660 0.91193 0.90361 0.85421 0.88675 0.84016 0.91571 0.90796 0.94429 0.93616 0.90914 0.90884 0.90648 0.93774 0.93326 0.95385 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.02 71.24 0.71 -1.42 16 2 C -0.11 -3.44 5.87 -19.93 -0.12 -3.56 16 3 C -0.14 -5.05 9.71 22.20 0.22 -4.83 16 4 C -0.12 -5.63 9.04 22.36 0.20 -5.42 16 5 C -0.07 -3.30 5.42 -19.86 -0.11 -3.41 16 6 C -0.09 -3.21 4.70 -19.86 -0.09 -3.30 16 7 C -0.12 -3.91 8.56 22.36 0.19 -3.72 16 8 C -0.02 -0.66 0.63 -53.04 -0.03 -0.70 16 9 C -0.13 -3.68 8.16 71.99 0.59 -3.10 16 10 C -0.13 -3.22 7.95 71.98 0.57 -2.65 16 11 C -0.10 -3.84 4.68 30.61 0.14 -3.69 16 12 C -0.10 -4.43 5.19 30.61 0.16 -4.27 16 13 C 0.06 3.40 2.34 -12.40 -0.03 3.37 16 14 H 0.03 1.63 7.20 -2.39 -0.02 1.61 16 15 C -0.51 -29.09 6.88 25.60 0.18 -28.91 16 16 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 17 C 0.01 0.80 5.45 84.66 0.46 1.27 16 18 N -0.93 -55.76 12.75 21.45 0.27 -55.49 16 19 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 25 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 26 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.10 4.74 7.27 -2.91 -0.02 4.72 16 28 H 0.14 3.48 6.34 -2.91 -0.02 3.47 16 29 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.23 6.47 -2.39 -0.02 1.22 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.50 6.41 -2.38 -0.02 1.48 16 35 H 0.07 2.36 8.12 -2.38 -0.02 2.34 16 36 H 0.04 1.71 8.08 -2.38 -0.02 1.70 16 37 H 0.05 2.21 6.26 -2.38 -0.01 2.19 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -64.36 303.51 6.35 -58.01 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.01 Total: 14.87 kcal Atomic # 6 Polarization: -67.38 SS G_CDS: 3.04 Total: -64.33 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.27 Total: -55.49 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.36 6.35 -58.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.147 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds