Wall clock time and date at job start Mon Mar 30 2020 07:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 120.11744 * 2 1 4 4 C 1.37932 * 119.77701 * 180.09722 * 3 2 1 5 5 C 1.38915 * 120.54275 * 359.95629 * 4 3 2 6 6 C 1.37667 * 119.67934 * 359.81746 * 5 4 3 7 7 C 1.37936 * 120.11614 * 179.97438 * 2 1 3 8 8 C 1.50632 * 122.56093 * 180.67761 * 6 5 4 9 9 H 1.09003 * 109.25317 * 102.48974 * 8 6 5 10 10 C 1.50694 * 109.25829 * 221.92206 * 8 6 5 11 11 H 1.08004 * 119.99936 * 36.16839 * 10 8 6 12 12 C 1.37877 * 120.00128 * 216.16384 * 10 8 6 13 13 N 1.31508 * 120.00036 * 5.73009 * 12 10 8 14 14 Si 1.86801 * 119.99824 * 185.72198 * 12 10 8 15 15 H 1.48501 * 109.46988 * 60.00703 * 14 12 10 16 16 H 1.48498 * 109.46906 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47426 * 300.00368 * 14 12 10 18 18 C 1.52739 * 110.58794 * 342.21158 * 8 6 5 19 19 C 1.53331 * 108.38373 * 51.11044 * 18 8 6 20 20 C 1.50624 * 117.75595 * 179.76272 * 5 4 3 21 21 C 1.53008 * 109.24912 * 41.99135 * 20 5 4 22 22 C 1.53001 * 109.25282 * 282.56669 * 20 5 4 23 23 H 1.09001 * 109.47283 * 90.00254 * 1 2 3 24 24 H 1.08996 * 109.47450 * 210.00152 * 1 2 3 25 25 H 1.08996 * 109.47389 * 330.00244 * 1 2 3 26 26 H 1.08004 * 120.10931 * 0.06842 * 3 2 1 27 27 H 1.07993 * 119.72769 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.72382 * 0.04185 * 7 2 1 29 29 H 0.96999 * 120.00169 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.68062 * 291.38549 * 18 8 6 31 31 H 1.08997 * 109.68303 * 170.83192 * 18 8 6 32 32 H 1.09000 * 109.68238 * 49.85485 * 19 18 8 33 33 H 1.08998 * 109.67639 * 170.40942 * 19 18 8 34 34 H 1.09005 * 109.46693 * 181.10644 * 21 20 5 35 35 H 1.09004 * 109.46799 * 301.09929 * 21 20 5 36 36 H 1.08999 * 109.47128 * 61.10235 * 21 20 5 37 37 H 1.09004 * 109.47015 * 298.89176 * 22 20 5 38 38 H 1.08997 * 109.47690 * 58.89412 * 22 20 5 39 39 H 1.09005 * 109.46804 * 178.90003 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1878 -0.0020 5 6 4.2788 -0.0128 -0.0032 6 6 3.5881 -1.2036 0.0016 7 6 2.1991 -1.1932 0.0005 8 6 4.2794 -2.5418 0.0157 9 1 4.2406 -2.9558 1.0233 10 6 3.5728 -3.4763 -0.9321 11 1 3.1589 -3.0979 -1.8552 12 6 3.4548 -4.8143 -0.6210 13 7 3.8575 -5.2549 0.5508 14 14 2.7226 -6.0011 -1.8639 15 1 3.5442 -5.9916 -3.1009 16 1 2.7075 -7.3710 -1.2909 17 1 1.3347 -5.5844 -2.1883 18 6 5.7381 -2.3973 -0.4135 19 6 6.3807 -1.2853 0.4241 20 6 5.7837 0.0515 -0.0109 21 6 6.2467 1.1477 0.9510 22 6 6.2672 0.3842 -1.4239 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1335 0.0011 27 1 4.1211 2.1224 -0.0024 28 1 1.6564 -2.1269 0.0003 29 1 3.7747 -6.1963 0.7695 30 1 5.7856 -2.1349 -1.4704 31 1 6.2654 -3.3360 -0.2438 32 1 6.1720 -1.4542 1.4805 33 1 7.4581 -1.2774 0.2589 34 1 7.3348 1.2105 0.9335 35 1 5.8225 2.1036 0.6437 36 1 5.9127 0.9097 1.9609 37 1 5.9478 -0.3993 -2.1111 38 1 5.8431 1.3379 -1.7379 39 1 7.3552 0.4509 -1.4293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261015368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:06 Heat of formation + Delta-G solvation = -10.170920 kcal Electronic energy + Delta-G solvation = -18154.695941 eV Core-core repulsion = 15639.426850 eV Total energy + Delta-G solvation = -2515.269091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74947 -36.45871 -34.22369 -31.57788 -31.32375 -29.15660 -26.91408 -26.64572 -26.06110 -23.38565 -22.09913 -20.97576 -19.72575 -17.62232 -16.40972 -15.40145 -14.98307 -14.56967 -14.21668 -13.54679 -13.33910 -13.28029 -13.03441 -12.55740 -12.37975 -12.17668 -11.90954 -11.64646 -11.47976 -11.26455 -11.19670 -10.99634 -10.88995 -10.70687 -10.50503 -10.37250 -10.01712 -9.91006 -9.53606 -8.98950 -8.88539 -8.50084 -7.79825 -7.52887 -6.03910 -4.06149 2.15387 2.30409 3.30431 3.35513 3.38642 4.40103 4.58716 5.18132 5.26111 5.27574 5.50298 5.52810 5.61746 5.73302 5.83011 5.93822 5.99044 6.02483 6.06878 6.18354 6.21028 6.26350 6.33990 6.39477 6.43782 6.52968 6.59656 6.68400 6.81941 6.88917 6.91241 7.10961 7.17858 7.26269 7.38221 7.56006 7.74261 7.84575 7.91661 8.00546 8.42067 9.02166 9.56138 11.04398 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.009647 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.913940 B = 2901.908747 C = 3966.337608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.148 4.148 4 C -0.125 4.125 5 C -0.090 4.090 6 C -0.027 4.027 7 C -0.100 4.100 8 C 0.062 3.938 9 H 0.074 0.926 10 C -0.505 4.505 11 H 0.054 0.946 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.102 4.102 19 C -0.111 4.111 20 C -0.018 4.018 21 C -0.138 4.138 22 C -0.135 4.135 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 10.671 -0.258 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.106 4.106 3 C -0.166 4.166 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.027 4.027 7 C -0.118 4.118 8 C 0.044 3.956 9 H 0.092 0.908 10 C -0.543 4.543 11 H 0.072 0.928 12 C -0.137 4.137 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.018 4.018 21 C -0.195 4.195 22 C -0.193 4.193 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.782 10.495 -0.143 10.525 hybrid contribution -0.444 -0.671 -0.690 1.060 sum 0.339 9.824 -0.833 9.865 Atomic orbital electron populations 1.20688 0.92377 1.01786 1.01470 1.19814 0.95287 0.93676 1.01870 1.20643 0.94086 0.96659 1.05217 1.20967 0.93885 0.97110 1.02356 1.19506 0.94199 0.92654 1.02669 1.20496 0.93625 0.95798 0.92753 1.21249 0.94407 0.97026 0.99135 1.17972 0.90361 0.87625 0.99654 0.90844 1.20987 1.36160 0.92339 1.04842 0.92753 1.24963 0.95231 0.98450 0.95007 1.69894 1.47794 1.15165 1.20182 0.86711 0.79742 0.80142 0.81771 1.20210 1.21326 1.20227 1.21704 0.98276 0.95997 0.98030 1.21723 0.98253 0.94553 1.00373 1.19308 0.91558 0.95786 0.95176 1.21957 1.00186 0.98040 0.99313 1.21915 0.99812 1.01193 0.96331 0.92037 0.91911 0.92579 0.87694 0.87438 0.85526 0.92798 0.93227 0.92646 0.92417 0.93235 0.93078 0.92925 0.92795 0.91904 0.93377 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.02 36.00 0.36 -1.22 16 2 C -0.11 -1.96 5.87 -104.72 -0.61 -2.57 16 3 C -0.15 -2.53 9.71 -39.68 -0.39 -2.92 16 4 C -0.13 -2.18 8.89 -39.44 -0.35 -2.53 16 5 C -0.09 -1.74 4.71 -104.62 -0.49 -2.24 16 6 C -0.03 -0.59 5.42 -104.62 -0.57 -1.16 16 7 C -0.10 -2.16 8.70 -39.45 -0.34 -2.50 16 8 C 0.06 1.52 2.34 -93.09 -0.22 1.30 16 9 H 0.07 2.03 7.20 -51.93 -0.37 1.65 16 10 C -0.51 -13.49 6.88 -34.44 -0.24 -13.72 16 11 H 0.05 1.47 7.82 -52.48 -0.41 1.06 16 12 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 13 N -0.89 -25.28 12.75 55.43 0.71 -24.58 16 14 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.10 -2.25 5.19 -26.69 -0.14 -2.39 16 19 C -0.11 -2.05 4.69 -26.70 -0.13 -2.18 16 20 C -0.02 -0.31 0.63 -155.83 -0.10 -0.41 16 21 C -0.14 -1.97 7.98 37.16 0.30 -1.67 16 22 C -0.14 -2.11 8.18 37.16 0.30 -1.80 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 27 H 0.11 1.61 6.31 -52.49 -0.33 1.28 16 28 H 0.13 2.91 7.27 -52.49 -0.38 2.53 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 1.08 6.24 -51.93 -0.32 0.76 16 31 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.68 6.35 -51.93 -0.33 0.36 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 38 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -27.63 303.39 -8.70 -36.34 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.26 Total: 1.96 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -2.71 Total: -34.34 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.71 Total: -24.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.63 -8.70 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.167 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds