Wall clock time and date at job start Mon Mar 30 2020 07:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 120.11744 * 2 1 4 4 C 1.37932 * 119.77701 * 180.09722 * 3 2 1 5 5 C 1.38915 * 120.54275 * 359.95629 * 4 3 2 6 6 C 1.37667 * 119.67934 * 359.81746 * 5 4 3 7 7 C 1.37936 * 120.11614 * 179.97438 * 2 1 3 8 8 C 1.50632 * 122.56093 * 180.67761 * 6 5 4 9 9 H 1.09003 * 109.25317 * 102.48974 * 8 6 5 10 10 C 1.50694 * 109.25829 * 221.92206 * 8 6 5 11 11 H 1.08004 * 119.99936 * 36.16839 * 10 8 6 12 12 C 1.37877 * 120.00128 * 216.16384 * 10 8 6 13 13 N 1.31508 * 120.00036 * 5.73009 * 12 10 8 14 14 Si 1.86801 * 119.99824 * 185.72198 * 12 10 8 15 15 H 1.48501 * 109.46988 * 60.00703 * 14 12 10 16 16 H 1.48498 * 109.46906 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47426 * 300.00368 * 14 12 10 18 18 C 1.52739 * 110.58794 * 342.21158 * 8 6 5 19 19 C 1.53331 * 108.38373 * 51.11044 * 18 8 6 20 20 C 1.50624 * 117.75595 * 179.76272 * 5 4 3 21 21 C 1.53008 * 109.24912 * 41.99135 * 20 5 4 22 22 C 1.53001 * 109.25282 * 282.56669 * 20 5 4 23 23 H 1.09001 * 109.47283 * 90.00254 * 1 2 3 24 24 H 1.08996 * 109.47450 * 210.00152 * 1 2 3 25 25 H 1.08996 * 109.47389 * 330.00244 * 1 2 3 26 26 H 1.08004 * 120.10931 * 0.06842 * 3 2 1 27 27 H 1.07993 * 119.72769 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.72382 * 0.04185 * 7 2 1 29 29 H 0.96999 * 120.00169 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.68062 * 291.38549 * 18 8 6 31 31 H 1.08997 * 109.68303 * 170.83192 * 18 8 6 32 32 H 1.09000 * 109.68238 * 49.85485 * 19 18 8 33 33 H 1.08998 * 109.67639 * 170.40942 * 19 18 8 34 34 H 1.09005 * 109.46693 * 181.10644 * 21 20 5 35 35 H 1.09004 * 109.46799 * 301.09929 * 21 20 5 36 36 H 1.08999 * 109.47128 * 61.10235 * 21 20 5 37 37 H 1.09004 * 109.47015 * 298.89176 * 22 20 5 38 38 H 1.08997 * 109.47690 * 58.89412 * 22 20 5 39 39 H 1.09005 * 109.46804 * 178.90003 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1878 -0.0020 5 6 4.2788 -0.0128 -0.0032 6 6 3.5881 -1.2036 0.0016 7 6 2.1991 -1.1932 0.0005 8 6 4.2794 -2.5418 0.0157 9 1 4.2406 -2.9558 1.0233 10 6 3.5728 -3.4763 -0.9321 11 1 3.1589 -3.0979 -1.8552 12 6 3.4548 -4.8143 -0.6210 13 7 3.8575 -5.2549 0.5508 14 14 2.7226 -6.0011 -1.8639 15 1 3.5442 -5.9916 -3.1009 16 1 2.7075 -7.3710 -1.2909 17 1 1.3347 -5.5844 -2.1883 18 6 5.7381 -2.3973 -0.4135 19 6 6.3807 -1.2853 0.4241 20 6 5.7837 0.0515 -0.0109 21 6 6.2467 1.1477 0.9510 22 6 6.2672 0.3842 -1.4239 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6644 2.1335 0.0011 27 1 4.1211 2.1224 -0.0024 28 1 1.6564 -2.1269 0.0003 29 1 3.7747 -6.1963 0.7695 30 1 5.7856 -2.1349 -1.4704 31 1 6.2654 -3.3360 -0.2438 32 1 6.1720 -1.4542 1.4805 33 1 7.4581 -1.2774 0.2589 34 1 7.3348 1.2105 0.9335 35 1 5.8225 2.1036 0.6437 36 1 5.9127 0.9097 1.9609 37 1 5.9478 -0.3993 -2.1111 38 1 5.8431 1.3379 -1.7379 39 1 7.3552 0.4509 -1.4293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261015368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:05 Heat of formation + Delta-G solvation = -22.692633 kcal Electronic energy + Delta-G solvation = -18155.238923 eV Core-core repulsion = 15639.426850 eV Total energy + Delta-G solvation = -2515.812073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24324 -37.88504 -36.02537 -33.49986 -32.69981 -30.66534 -28.50899 -28.03756 -27.39841 -25.22420 -23.64658 -22.45377 -21.30926 -19.15302 -18.48244 -16.95958 -16.53568 -16.25627 -15.78511 -15.01154 -14.75850 -14.63329 -14.39838 -14.27531 -14.00908 -13.54813 -13.36132 -13.14915 -12.83731 -12.81857 -12.65489 -12.50312 -12.44851 -12.38457 -12.18236 -11.85671 -11.58293 -11.54580 -11.23695 -10.83165 -10.60287 -10.52600 -9.34092 -9.05197 -8.13778 -6.22402 0.68189 0.79122 1.36961 1.38289 1.46190 2.39811 3.07666 3.14643 3.85287 3.93908 4.13947 4.23228 4.30134 4.33679 4.52436 4.62949 4.70109 4.76118 4.82416 4.86687 4.87724 4.91786 4.95600 5.05883 5.09127 5.18650 5.21853 5.24891 5.28193 5.41346 5.46592 5.53671 5.58367 5.61575 5.69970 5.84510 5.86321 6.00450 6.20334 6.35624 6.49492 6.91842 7.41889 8.93618 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.009647 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.913940 B = 2901.908747 C = 3966.337608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.110 4.110 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.062 4.062 7 C -0.130 4.130 8 C 0.064 3.936 9 H 0.027 0.973 10 C -0.511 4.511 11 H 0.043 0.957 12 C 0.014 3.986 13 N -0.926 5.926 14 Si 0.948 3.052 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.095 4.095 19 C -0.105 4.105 20 C -0.020 4.020 21 C -0.132 4.132 22 C -0.131 4.131 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.093 0.907 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 14.002 -1.011 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.157 4.157 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.062 4.062 7 C -0.148 4.148 8 C 0.045 3.955 9 H 0.045 0.955 10 C -0.549 4.549 11 H 0.062 0.938 12 C -0.184 4.184 13 N -0.566 5.566 14 Si 0.774 3.226 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.133 4.133 19 C -0.142 4.142 20 C -0.020 4.020 21 C -0.189 4.189 22 C -0.188 4.188 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.897 13.832 -0.904 13.891 hybrid contribution -0.520 -1.641 -0.442 1.777 sum 0.378 12.191 -1.346 12.271 Atomic orbital electron populations 1.20737 0.89966 1.02915 1.02511 1.20157 0.97185 0.92967 1.00644 1.21117 0.94318 0.97451 1.02861 1.21356 0.94321 0.97482 1.00583 1.19798 0.95783 0.92260 1.01810 1.20351 0.94097 0.95711 0.96088 1.21139 0.94505 0.97314 1.01865 1.17790 0.92102 0.88999 0.96584 0.95466 1.21222 1.35793 0.93174 1.04701 0.93849 1.25698 0.95967 1.00055 0.96666 1.70032 1.49440 1.15299 1.21843 0.85756 0.79126 0.78111 0.79614 1.19573 1.20814 1.19682 1.21520 0.96841 0.96361 0.98624 1.21653 0.99523 0.94377 0.98663 1.19389 0.89969 0.95610 0.97040 1.21908 1.01680 0.97459 0.97827 1.21879 1.01390 1.01085 0.94476 0.90928 0.92676 0.89593 0.83707 0.83807 0.88899 0.92928 0.93331 0.95407 0.93803 0.90705 0.90973 0.90829 0.93628 0.94435 0.91585 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 10.02 71.23 0.71 -2.21 16 2 C -0.11 -3.90 5.87 -19.93 -0.12 -4.02 16 3 C -0.14 -4.27 9.71 22.20 0.22 -4.05 16 4 C -0.12 -3.73 8.89 22.36 0.20 -3.53 16 5 C -0.10 -3.62 4.71 -19.86 -0.09 -3.71 16 6 C -0.06 -2.87 5.42 -19.86 -0.11 -2.98 16 7 C -0.13 -5.84 8.70 22.36 0.19 -5.65 16 8 C 0.06 3.34 2.34 -12.40 -0.03 3.31 16 9 H 0.03 1.65 7.20 -2.39 -0.02 1.63 16 10 C -0.51 -28.99 6.88 25.60 0.18 -28.82 16 11 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 12 C 0.01 0.82 5.45 84.66 0.46 1.28 16 13 N -0.93 -55.67 12.75 21.45 0.27 -55.39 16 14 Si 0.95 44.89 29.54 68.60 2.03 46.91 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 C -0.10 -4.41 5.19 30.62 0.16 -4.26 16 19 C -0.10 -3.85 4.69 30.62 0.14 -3.71 16 20 C -0.02 -0.64 0.63 -53.04 -0.03 -0.67 16 21 C -0.13 -3.23 7.98 71.98 0.57 -2.66 16 22 C -0.13 -3.70 8.18 71.98 0.59 -3.11 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 25 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 26 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.14 3.44 6.31 -2.91 -0.02 3.43 16 28 H 0.09 4.65 7.27 -2.91 -0.02 4.63 16 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.05 2.21 6.24 -2.39 -0.01 2.19 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.07 1.51 6.35 -2.39 -0.02 1.49 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.23 6.43 -2.39 -0.02 1.22 16 38 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 39 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -64.39 303.39 6.35 -58.03 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.01 Total: 15.23 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 3.05 Total: -64.78 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.27 Total: -55.39 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.39 6.35 -58.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261015368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.341 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds