Wall clock time and date at job start Mon Mar 30 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47031 * 120.00083 * 2 1 3 5 5 C 1.50707 * 109.46923 * 65.00303 * 4 2 1 6 6 N 1.31092 * 125.24780 * 270.01799 * 5 4 2 7 7 C 1.32976 * 110.05761 * 179.97438 * 6 5 4 8 8 C 1.39440 * 107.43874 * 359.97438 * 7 6 5 9 9 C 1.39401 * 132.97718 * 179.97438 * 8 7 6 10 10 C 1.40687 * 118.87022 * 180.02562 * 9 8 7 11 11 C 1.40439 * 120.75443 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99892 * 23.10287 * 11 10 9 13 13 C 1.39724 * 119.99903 * 203.10671 * 11 10 9 14 14 N 1.30978 * 119.99897 * 17.30457 * 13 11 10 15 15 Si 1.86803 * 119.99939 * 197.30651 * 13 11 10 16 16 H 1.48495 * 109.47303 * 90.00013 * 15 13 11 17 17 H 1.48502 * 109.46993 * 210.00176 * 15 13 11 18 18 H 1.48501 * 109.47028 * 329.99943 * 15 13 11 19 19 C 1.46927 * 118.49064 * 359.78831 * 10 9 8 20 20 C 1.34042 * 119.64698 * 0.46004 * 19 10 9 21 21 N 1.35918 * 125.25347 * 90.00129 * 5 4 2 22 22 H 1.09006 * 109.47088 * 299.99351 * 1 2 3 23 23 H 1.08996 * 109.47716 * 59.99776 * 1 2 3 24 24 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46507 * 240.00293 * 2 1 3 26 26 H 1.08998 * 109.46929 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47116 * 300.00591 * 3 2 1 28 28 H 1.09006 * 109.46717 * 60.00422 * 3 2 1 29 29 H 1.08990 * 109.47339 * 305.00280 * 4 2 1 30 30 H 1.08997 * 109.47117 * 184.99673 * 4 2 1 31 31 H 1.07999 * 126.27640 * 180.02562 * 7 6 5 32 32 H 1.08006 * 120.56280 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99719 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.17766 * 180.27198 * 19 10 9 35 35 H 1.07999 * 119.42231 * 179.78223 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1888 6 7 0.5263 -2.6722 1.6644 7 6 0.4843 -3.9836 1.4478 8 6 1.6602 -4.3356 0.7862 9 6 2.1579 -5.5489 0.3135 10 6 3.4109 -5.5663 -0.3261 11 6 3.9497 -6.7664 -0.8178 12 1 3.2976 -7.5943 -1.0540 13 6 5.3293 -6.8893 -1.0013 14 7 6.1453 -6.0484 -0.4160 15 14 6.0100 -8.2529 -2.0815 16 1 6.1176 -7.7687 -3.4811 17 1 7.3542 -8.6493 -1.5901 18 1 5.0994 -9.4249 -2.0318 19 6 4.1406 -4.2994 -0.4726 20 6 3.6076 -3.1677 0.0091 21 7 2.3823 -3.1678 0.6324 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6054 -0.2619 2.1369 30 1 3.1263 -0.6444 1.2951 31 1 -0.3144 -4.6529 1.7314 32 1 1.5913 -6.4602 0.4362 33 1 7.1031 -6.1340 -0.5432 34 1 5.1026 -4.2806 -0.9630 35 1 4.1487 -2.2392 -0.0975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:23 Heat of formation + Delta-G solvation = 47.811375 kcal Electronic energy + Delta-G solvation = -17126.416433 eV Core-core repulsion = 14510.121300 eV Total energy + Delta-G solvation = -2616.295133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20537 -36.49442 -35.69561 -33.84748 -31.66887 -29.62240 -28.57748 -26.88898 -26.75836 -24.21693 -21.98989 -20.99349 -20.23424 -19.39521 -17.61890 -16.13792 -15.47910 -14.97431 -14.83463 -14.70316 -14.00285 -13.48094 -13.43867 -13.13807 -12.56668 -12.38314 -12.02909 -11.93159 -11.52056 -11.46887 -11.35094 -11.15746 -10.81950 -10.64616 -10.49613 -10.46565 -10.26822 -9.91829 -9.74211 -9.03037 -8.85698 -7.95498 -7.21675 -6.43071 -4.55839 2.23831 2.58374 2.89211 2.93347 2.96650 3.66766 3.89781 4.07775 4.26413 5.06596 5.18735 5.21079 5.24882 5.52382 5.56375 5.76986 5.89137 5.91631 6.03768 6.09215 6.16714 6.21823 6.33700 6.45402 6.52569 6.62069 6.70620 6.71768 6.77721 6.84835 7.09922 7.39638 7.58815 7.83709 7.91755 8.08816 8.41743 8.49935 8.64275 9.16772 9.76728 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.005736 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.208429 B = 4880.189156 C = 5370.497788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.008 4.008 5 C 0.083 3.917 6 N -0.443 5.443 7 C -0.141 4.141 8 C 0.108 3.892 9 C -0.299 4.299 10 C 0.117 3.883 11 C -0.431 4.431 12 H 0.089 0.911 13 C 0.073 3.927 14 N -0.785 5.785 15 Si 0.919 3.081 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.258 1.258 19 C -0.107 4.107 20 C 0.017 3.983 21 N -0.382 5.382 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.288 0.712 34 H 0.148 0.852 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 6.543 -2.108 6.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.047 4.047 5 C -0.167 4.167 6 N -0.157 5.157 7 C -0.292 4.292 8 C -0.003 4.003 9 C -0.322 4.322 10 C 0.112 3.888 11 C -0.460 4.460 12 H 0.108 0.892 13 C -0.147 4.147 14 N -0.409 5.409 15 Si 0.743 3.257 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.129 4.129 20 C -0.102 4.102 21 N -0.059 5.059 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.483 7.245 -1.624 7.441 hybrid contribution 1.155 -1.176 -0.807 1.835 sum 0.672 6.069 -2.431 6.573 Atomic orbital electron populations 1.21769 0.94772 1.02829 1.00372 1.21105 0.96694 0.95158 0.98207 1.21840 1.00652 0.96223 1.01501 1.19704 0.99567 0.87050 0.98395 1.22345 0.91879 0.91349 1.11134 1.69351 1.17804 1.09936 1.18647 1.21982 0.99670 0.91812 1.15779 1.19545 0.93134 0.86553 1.01097 1.20069 1.01909 0.93989 1.16231 1.18622 0.90366 0.91974 0.87868 1.19469 0.92047 0.99328 1.35159 0.89248 1.26100 0.97199 0.97450 0.93943 1.69821 1.05446 1.33800 1.31848 0.86107 0.78641 0.80756 0.80232 1.18883 1.19946 1.18151 1.22349 1.00302 0.90761 0.99530 1.21133 0.86879 0.99844 1.02315 1.42524 1.13976 1.08881 1.40490 0.92977 0.93868 0.91508 0.91723 0.92941 0.92924 0.92714 0.90223 0.91868 0.82746 0.86827 0.90061 0.83477 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.00 37.16 0.33 -1.77 16 2 C -0.09 -1.36 2.91 -90.62 -0.26 -1.62 16 3 C -0.14 -1.68 9.19 37.16 0.34 -1.33 16 4 C -0.01 -0.13 5.12 -27.88 -0.14 -0.28 16 5 C 0.08 1.78 6.45 -154.11 -0.99 0.79 16 6 N -0.44 -10.15 10.43 -9.61 -0.10 -10.25 16 7 C -0.14 -3.31 12.06 -16.61 -0.20 -3.52 16 8 C 0.11 2.65 6.77 -84.13 -0.57 2.08 16 9 C -0.30 -7.45 9.94 -38.22 -0.38 -7.83 16 10 C 0.12 2.93 5.72 -104.63 -0.60 2.33 16 11 C -0.43 -10.43 9.04 -38.20 -0.35 -10.78 16 12 H 0.09 2.09 7.90 -52.49 -0.41 1.67 16 13 C 0.07 1.64 5.20 -17.36 -0.09 1.55 16 14 N -0.78 -17.95 10.86 55.54 0.60 -17.35 16 15 Si 0.92 16.71 29.59 -169.99 -5.03 11.68 16 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 19 C -0.11 -2.48 8.80 -37.54 -0.33 -2.81 16 20 C 0.02 0.37 10.70 -16.50 -0.18 0.19 16 21 N -0.38 -8.82 2.97 -57.98 -0.17 -8.99 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.21 6.81 -51.93 -0.35 0.85 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 31 H 0.16 3.26 8.06 -52.49 -0.42 2.84 16 32 H 0.11 2.69 8.06 -52.48 -0.42 2.27 16 33 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 34 H 0.15 3.32 6.24 -52.49 -0.33 3.00 16 35 H 0.14 2.44 7.87 -52.49 -0.41 2.02 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -26.90 294.21 -8.54 -35.44 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.86 Total: 8.03 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.42 Total: -22.99 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.33 Total: -36.60 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.90 -8.54 -35.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.252 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds