Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47031 * 120.00083 * 2 1 3 5 5 C 1.50707 * 109.46923 * 65.00303 * 4 2 1 6 6 N 1.31092 * 125.24780 * 270.01799 * 5 4 2 7 7 C 1.32976 * 110.05761 * 179.97438 * 6 5 4 8 8 C 1.39440 * 107.43874 * 359.97438 * 7 6 5 9 9 C 1.39401 * 132.97718 * 179.97438 * 8 7 6 10 10 C 1.40687 * 118.87022 * 180.02562 * 9 8 7 11 11 C 1.40439 * 120.75443 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99892 * 23.10287 * 11 10 9 13 13 C 1.39724 * 119.99903 * 203.10671 * 11 10 9 14 14 N 1.30978 * 119.99897 * 17.30457 * 13 11 10 15 15 Si 1.86803 * 119.99939 * 197.30651 * 13 11 10 16 16 H 1.48495 * 109.47303 * 90.00013 * 15 13 11 17 17 H 1.48502 * 109.46993 * 210.00176 * 15 13 11 18 18 H 1.48501 * 109.47028 * 329.99943 * 15 13 11 19 19 C 1.46927 * 118.49064 * 359.78831 * 10 9 8 20 20 C 1.34042 * 119.64698 * 0.46004 * 19 10 9 21 21 N 1.35918 * 125.25347 * 90.00129 * 5 4 2 22 22 H 1.09006 * 109.47088 * 299.99351 * 1 2 3 23 23 H 1.08996 * 109.47716 * 59.99776 * 1 2 3 24 24 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46507 * 240.00293 * 2 1 3 26 26 H 1.08998 * 109.46929 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47116 * 300.00591 * 3 2 1 28 28 H 1.09006 * 109.46717 * 60.00422 * 3 2 1 29 29 H 1.08990 * 109.47339 * 305.00280 * 4 2 1 30 30 H 1.08997 * 109.47117 * 184.99673 * 4 2 1 31 31 H 1.07999 * 126.27640 * 180.02562 * 7 6 5 32 32 H 1.08006 * 120.56280 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99719 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.17766 * 180.27198 * 19 10 9 35 35 H 1.07999 * 119.42231 * 179.78223 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1888 6 7 0.5263 -2.6722 1.6644 7 6 0.4843 -3.9836 1.4478 8 6 1.6602 -4.3356 0.7862 9 6 2.1579 -5.5489 0.3135 10 6 3.4109 -5.5663 -0.3261 11 6 3.9497 -6.7664 -0.8178 12 1 3.2976 -7.5943 -1.0540 13 6 5.3293 -6.8893 -1.0013 14 7 6.1453 -6.0484 -0.4160 15 14 6.0100 -8.2529 -2.0815 16 1 6.1176 -7.7687 -3.4811 17 1 7.3542 -8.6493 -1.5901 18 1 5.0994 -9.4249 -2.0318 19 6 4.1406 -4.2994 -0.4726 20 6 3.6076 -3.1677 0.0091 21 7 2.3823 -3.1678 0.6324 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6054 -0.2619 2.1369 30 1 3.1263 -0.6444 1.2951 31 1 -0.3144 -4.6529 1.7314 32 1 1.5913 -6.4602 0.4362 33 1 7.1031 -6.1340 -0.5432 34 1 5.1026 -4.2806 -0.9630 35 1 4.1487 -2.2392 -0.0975 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 35.973813 kcal Electronic energy + Delta-G solvation = -17126.929748 eV Core-core repulsion = 14510.121300 eV Total energy + Delta-G solvation = -2616.808448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.96627 -38.13397 -37.04688 -35.61069 -33.43547 -31.32666 -30.22233 -28.39329 -27.94494 -25.89807 -23.78045 -22.74045 -21.73818 -20.82248 -19.41353 -17.83191 -17.14898 -16.74983 -16.38110 -16.06314 -15.63451 -15.07741 -14.71698 -14.64980 -14.17827 -13.94851 -13.45141 -13.11605 -13.02439 -12.96165 -12.82456 -12.63371 -12.37776 -12.02443 -11.90872 -11.72949 -11.65957 -11.53961 -11.43910 -10.82780 -10.65270 -9.75916 -8.93867 -8.21894 -6.40537 0.45752 0.83250 1.39554 1.48191 1.53506 2.14341 2.17408 2.36833 2.47742 3.38038 3.69602 3.87948 3.97392 4.09488 4.22278 4.38168 4.53068 4.69251 4.72030 4.80735 4.86283 4.88491 4.94988 5.02077 5.07728 5.09382 5.13334 5.28228 5.32708 5.48224 5.52077 5.60420 5.74421 6.02293 6.11066 6.26511 6.60732 6.69358 6.88421 7.38423 8.07785 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.005736 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.208429 B = 4880.189156 C = 5370.497788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.010 4.010 5 C 0.099 3.901 6 N -0.460 5.460 7 C -0.160 4.160 8 C 0.081 3.919 9 C -0.334 4.334 10 C 0.095 3.905 11 C -0.458 4.458 12 H 0.086 0.914 13 C 0.042 3.958 14 N -0.803 5.803 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.263 1.263 18 H -0.260 1.260 19 C -0.124 4.124 20 C 0.026 3.974 21 N -0.394 5.394 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.301 0.699 34 H 0.152 0.848 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 8.136 -2.765 8.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.194 4.194 4 C -0.049 4.049 5 C -0.153 4.153 6 N -0.175 5.175 7 C -0.310 4.310 8 C -0.029 4.029 9 C -0.357 4.357 10 C 0.089 3.911 11 C -0.486 4.486 12 H 0.104 0.896 13 C -0.178 4.178 14 N -0.427 5.427 15 Si 0.812 3.188 16 H -0.180 1.180 17 H -0.188 1.188 18 H -0.184 1.184 19 C -0.146 4.146 20 C -0.092 4.092 21 N -0.071 5.071 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.183 0.817 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.170 0.830 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.026 8.835 -2.266 9.179 hybrid contribution 0.685 -1.593 -0.564 1.824 sum 1.711 7.242 -2.830 7.961 Atomic orbital electron populations 1.21743 0.95231 1.00791 1.01765 1.21060 0.96260 0.97051 0.96319 1.21775 1.01341 0.93600 1.02724 1.19995 1.00925 0.83978 1.00034 1.23415 0.90758 0.92948 1.08191 1.69390 1.18776 1.09575 1.19754 1.22269 0.99988 0.92528 1.16186 1.19715 0.93985 0.87242 1.02000 1.20092 1.02832 0.94270 1.18492 1.18983 0.90735 0.93332 0.88039 1.19727 0.93413 0.99290 1.36189 0.89628 1.26896 0.96548 0.99797 0.94510 1.69819 1.06378 1.34735 1.31748 0.85028 0.78018 0.77393 0.78391 1.18016 1.18750 1.18404 1.22384 1.00648 0.90712 1.00880 1.21648 0.86213 1.00963 1.00357 1.42771 1.14534 1.08754 1.41051 0.92034 0.92093 0.95173 0.93202 0.91826 0.91703 0.91553 0.89043 0.89995 0.81689 0.87502 0.88771 0.83041 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.00 71.98 0.65 -3.27 16 2 C -0.09 -2.35 2.91 -10.79 -0.03 -2.38 16 3 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 4 C -0.01 -0.32 5.12 29.85 0.15 -0.17 16 5 C 0.10 4.18 6.45 137.68 0.89 5.07 16 6 N -0.46 -21.25 10.43 -184.32 -1.92 -23.17 16 7 C -0.16 -7.77 12.06 84.81 1.02 -6.75 16 8 C 0.08 4.15 6.77 38.72 0.26 4.41 16 9 C -0.33 -17.53 9.94 23.15 0.23 -17.30 16 10 C 0.09 4.89 5.72 -19.87 -0.11 4.78 16 11 C -0.46 -22.73 9.04 23.17 0.21 -22.52 16 12 H 0.09 4.15 7.90 -2.91 -0.02 4.13 16 13 C 0.04 1.84 5.20 85.18 0.44 2.28 16 14 N -0.80 -36.15 10.86 21.79 0.24 -35.91 16 15 Si 0.99 33.36 29.59 68.60 2.03 35.39 16 16 H -0.26 -8.26 7.11 99.48 0.71 -7.56 16 17 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 19 C -0.12 -5.79 8.80 23.59 0.21 -5.58 16 20 C 0.03 1.11 10.70 82.85 0.89 2.00 16 21 N -0.39 -18.20 2.97 -337.34 -1.00 -19.20 16 22 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 1.06 6.81 -2.39 -0.02 1.05 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.08 2.24 7.90 -2.39 -0.02 2.22 16 31 H 0.17 7.29 8.06 -2.91 -0.02 7.27 16 32 H 0.11 5.47 8.06 -2.91 -0.02 5.44 16 33 H 0.30 11.92 8.30 -92.71 -0.77 11.15 16 34 H 0.15 6.81 6.24 -2.91 -0.02 6.79 16 35 H 0.18 5.83 7.87 -2.91 -0.02 5.81 16 Total: -1.00 -59.14 294.21 5.88 -53.26 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 1.07 Total: 31.02 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 5.47 Total: -41.40 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.69 Total: -78.28 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Total: -59.14 5.88 -53.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.236 kcal (2) G-P(sol) polarization free energy of solvation -59.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds