Wall clock time and date at job start Mon Mar 30 2020 07:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36829 * 125.06476 * 2 1 4 4 C 1.34236 * 109.93345 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.50451 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47700 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46859 * 59.97373 * 5 4 3 8 8 H 1.08006 * 119.99902 * 294.94045 * 7 5 4 9 9 C 1.37875 * 120.00282 * 114.94996 * 7 5 4 10 10 N 1.31515 * 120.00498 * 184.77504 * 9 7 5 11 11 Si 1.86800 * 119.99655 * 4.76815 * 9 7 5 12 12 H 1.48503 * 109.46963 * 84.68280 * 11 9 7 13 13 H 1.48504 * 109.46965 * 204.68043 * 11 9 7 14 14 H 1.48498 * 109.47606 * 324.68299 * 11 9 7 15 15 C 1.52999 * 109.47213 * 299.97439 * 5 4 3 16 16 N 1.46897 * 109.47276 * 185.31088 * 15 5 4 17 17 C 1.46486 * 106.99777 * 359.97438 * 4 3 2 18 18 C 1.39627 * 134.03688 * 180.02562 * 17 4 3 19 19 C 1.36629 * 119.76511 * 179.21663 * 18 17 4 20 20 C 1.38831 * 120.52625 * 0.70417 * 19 18 17 21 21 C 1.37746 * 120.66624 * 359.52803 * 20 19 18 22 22 C 1.37694 * 125.06631 * 179.69511 * 2 1 3 23 23 H 1.09000 * 109.46965 * 90.02577 * 1 2 3 24 24 H 1.09000 * 109.46897 * 330.02256 * 1 2 3 25 25 H 1.09005 * 109.46717 * 210.02506 * 1 2 3 26 26 H 1.08004 * 125.03469 * 359.96126 * 3 2 1 27 27 H 0.96997 * 120.00275 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.46831 * 305.31650 * 15 5 4 29 29 H 1.09007 * 109.47072 * 65.31018 * 15 5 4 30 30 H 1.00898 * 110.99750 * 61.09576 * 16 15 5 31 31 H 1.00906 * 110.99646 * 185.05263 * 16 15 5 32 32 H 1.08006 * 120.11297 * 359.97438 * 18 17 4 33 33 H 1.07996 * 119.73749 * 180.27358 * 19 18 17 34 34 H 1.07998 * 119.66625 * 179.55341 * 20 19 18 35 35 H 1.08005 * 120.11071 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 4.7285 1.7049 -0.0002 6 1 5.6513 1.1247 -0.0004 7 6 4.6814 2.5733 1.2306 8 1 3.8763 3.2812 1.3615 9 6 5.6661 2.4642 2.1894 10 7 5.5758 3.1529 3.3061 11 14 7.1285 1.3380 1.9023 12 1 8.1621 2.0593 1.1171 13 1 7.6990 0.9245 3.2096 14 1 6.6871 0.1348 1.1521 15 6 4.6808 2.5874 -1.2491 16 7 5.8965 3.4094 -1.3147 17 6 3.5946 -0.6945 -0.0003 18 6 4.6295 -1.6319 -0.0002 19 6 4.3360 -2.9662 0.0162 20 6 3.0166 -3.3981 0.0181 21 6 1.9803 -2.4906 0.0133 22 6 2.2561 -1.1270 0.0060 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5143 26 1 1.8835 2.1355 -0.0006 27 1 6.2684 3.0759 3.9808 28 1 4.6196 1.9577 -2.1368 29 1 3.8058 3.2358 -1.2027 30 1 6.7210 2.8311 -1.3765 31 1 5.8522 4.0597 -2.0849 32 1 5.6583 -1.3032 -0.0007 33 1 5.1368 -3.6908 0.0208 34 1 2.8005 -4.4562 0.0239 35 1 0.9572 -2.8365 0.0152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:34 Heat of formation + Delta-G solvation = 62.684254 kcal Electronic energy + Delta-G solvation = -17472.105253 eV Core-core repulsion = 14856.455056 eV Total energy + Delta-G solvation = -2615.650197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73493 -36.60374 -35.43330 -32.37951 -31.98352 -29.89536 -29.30387 -27.84763 -25.24990 -23.87952 -22.17332 -20.99012 -20.76204 -18.42144 -16.97879 -16.34509 -15.74757 -15.00785 -14.90363 -14.77562 -14.09741 -13.57141 -13.45347 -13.34043 -12.94396 -12.55996 -12.43218 -12.24809 -11.91352 -11.44733 -11.17557 -10.92566 -10.80749 -10.76158 -10.30424 -9.94329 -9.55461 -9.00900 -8.82074 -8.35792 -7.69866 -7.61177 -6.82266 -5.89637 -3.83859 1.65368 2.11136 3.32884 3.41271 3.46079 3.48526 3.49999 4.43544 4.58730 5.01146 5.13491 5.30751 5.35838 5.43648 5.47645 5.51940 5.58440 5.59756 5.92065 6.05311 6.14741 6.24389 6.30828 6.38926 6.58726 6.71842 6.88640 6.94835 7.07848 7.24631 7.38700 7.57420 7.77171 7.89561 7.96500 8.10306 8.25497 8.67159 9.12557 9.74898 11.24515 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.009139 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.476865 B = 3063.151784 C = 3528.180019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.495 5.495 3 C 0.031 3.969 4 C -0.109 4.109 5 C 0.071 3.929 6 H 0.044 0.956 7 C -0.470 4.470 8 H 0.070 0.930 9 C 0.074 3.926 10 N -0.907 5.907 11 Si 0.875 3.125 12 H -0.275 1.275 13 H -0.296 1.296 14 H -0.264 1.264 15 C 0.083 3.917 16 N -0.831 5.831 17 C -0.104 4.104 18 C -0.063 4.063 19 C -0.164 4.164 20 C -0.108 4.108 21 C -0.138 4.138 22 C 0.095 3.905 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.162 0.838 27 H 0.260 0.740 28 H -0.005 1.005 29 H 0.059 0.941 30 H 0.328 0.672 31 H 0.323 0.677 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -9.052 -9.150 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 C -0.091 4.091 4 C -0.116 4.116 5 C 0.051 3.949 6 H 0.063 0.937 7 C -0.507 4.507 8 H 0.088 0.912 9 C -0.126 4.126 10 N -0.546 5.546 11 Si 0.704 3.296 12 H -0.201 1.201 13 H -0.223 1.223 14 H -0.190 1.190 15 C -0.048 4.048 16 N -0.358 5.358 17 C -0.109 4.109 18 C -0.082 4.082 19 C -0.184 4.184 20 C -0.128 4.128 21 C -0.159 4.159 22 C -0.012 4.012 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.179 0.821 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.264 -8.669 -8.241 13.994 hybrid contribution 0.801 -0.978 -0.787 1.489 sum -6.464 -9.647 -9.029 14.709 Atomic orbital electron populations 1.21771 0.78340 1.03548 1.01986 1.43698 1.05109 1.04478 1.64683 1.21432 0.90066 0.90131 1.07426 1.21096 0.95195 0.90807 1.04497 1.17816 0.90979 0.91426 0.94637 0.93743 1.20636 1.10137 1.18965 1.00989 0.91223 1.24961 0.97641 0.95284 0.94718 1.69891 1.34425 1.42801 1.07472 0.86928 0.83768 0.81781 0.77119 1.20112 1.22272 1.18976 1.21878 0.92270 0.94636 0.96012 1.58436 1.04263 1.22525 1.50565 1.19329 0.91782 0.93924 1.05909 1.20413 0.98349 0.92094 0.97307 1.20477 0.96174 0.95291 1.06429 1.20616 0.92362 0.98161 1.01622 1.19850 0.98747 0.89407 1.07897 1.18234 0.90494 0.88134 1.04323 0.92155 0.90272 0.90930 0.82093 0.93029 0.98659 0.92271 0.86020 0.86568 0.86423 0.86839 0.86636 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.03 59.85 0.66 1.68 16 2 N -0.49 -8.56 3.18 -121.80 -0.39 -8.94 16 3 C 0.03 0.60 10.82 -16.73 -0.18 0.42 16 4 C -0.11 -2.40 5.04 -102.71 -0.52 -2.92 16 5 C 0.07 1.67 2.32 -92.92 -0.22 1.46 16 6 H 0.04 1.07 4.51 -51.93 -0.23 0.84 16 7 C -0.47 -13.06 8.43 -34.44 -0.29 -13.35 16 8 H 0.07 2.11 8.06 -52.48 -0.42 1.69 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 10 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 11 Si 0.87 22.14 27.24 -169.99 -4.63 17.51 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 14 H -0.26 -6.33 5.30 56.52 0.30 -6.03 16 15 C 0.08 1.68 5.99 -3.83 -0.02 1.66 16 16 N -0.83 -16.08 9.32 -10.37 -0.10 -16.18 16 17 C -0.10 -2.19 6.35 -105.14 -0.67 -2.86 16 18 C -0.06 -1.23 10.05 -39.64 -0.40 -1.63 16 19 C -0.16 -2.69 9.97 -39.94 -0.40 -3.09 16 20 C -0.11 -1.62 10.01 -39.54 -0.40 -2.02 16 21 C -0.14 -2.18 9.96 -39.43 -0.39 -2.58 16 22 C 0.09 1.77 6.81 -83.99 -0.57 1.20 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.16 2.89 8.06 -52.48 -0.42 2.47 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.33 6.08 9.05 -39.29 -0.36 5.72 16 31 H 0.32 5.14 9.08 -39.29 -0.36 4.79 16 32 H 0.12 2.31 6.97 -52.48 -0.37 1.94 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -33.06 294.33 -8.17 -41.23 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.77 Total: 9.46 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.49 Total: -19.95 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.29 Total: -52.69 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.63 Total: 17.51 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.06 -8.17 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.916 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds