Wall clock time and date at job start Mon Mar 30 2020 07:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36829 * 125.06476 * 2 1 4 4 C 1.34236 * 109.93345 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.50451 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47700 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46859 * 59.97373 * 5 4 3 8 8 H 1.08006 * 119.99902 * 294.94045 * 7 5 4 9 9 C 1.37875 * 120.00282 * 114.94996 * 7 5 4 10 10 N 1.31515 * 120.00498 * 184.77504 * 9 7 5 11 11 Si 1.86800 * 119.99655 * 4.76815 * 9 7 5 12 12 H 1.48503 * 109.46963 * 84.68280 * 11 9 7 13 13 H 1.48504 * 109.46965 * 204.68043 * 11 9 7 14 14 H 1.48498 * 109.47606 * 324.68299 * 11 9 7 15 15 C 1.52999 * 109.47213 * 299.97439 * 5 4 3 16 16 N 1.46897 * 109.47276 * 185.31088 * 15 5 4 17 17 C 1.46486 * 106.99777 * 359.97438 * 4 3 2 18 18 C 1.39627 * 134.03688 * 180.02562 * 17 4 3 19 19 C 1.36629 * 119.76511 * 179.21663 * 18 17 4 20 20 C 1.38831 * 120.52625 * 0.70417 * 19 18 17 21 21 C 1.37746 * 120.66624 * 359.52803 * 20 19 18 22 22 C 1.37694 * 125.06631 * 179.69511 * 2 1 3 23 23 H 1.09000 * 109.46965 * 90.02577 * 1 2 3 24 24 H 1.09000 * 109.46897 * 330.02256 * 1 2 3 25 25 H 1.09005 * 109.46717 * 210.02506 * 1 2 3 26 26 H 1.08004 * 125.03469 * 359.96126 * 3 2 1 27 27 H 0.96997 * 120.00275 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.46831 * 305.31650 * 15 5 4 29 29 H 1.09007 * 109.47072 * 65.31018 * 15 5 4 30 30 H 1.00898 * 110.99750 * 61.09576 * 16 15 5 31 31 H 1.00906 * 110.99646 * 185.05263 * 16 15 5 32 32 H 1.08006 * 120.11297 * 359.97438 * 18 17 4 33 33 H 1.07996 * 119.73749 * 180.27358 * 19 18 17 34 34 H 1.07998 * 119.66625 * 179.55341 * 20 19 18 35 35 H 1.08005 * 120.11071 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 4.7285 1.7049 -0.0002 6 1 5.6513 1.1247 -0.0004 7 6 4.6814 2.5733 1.2306 8 1 3.8763 3.2812 1.3615 9 6 5.6661 2.4642 2.1894 10 7 5.5758 3.1529 3.3061 11 14 7.1285 1.3380 1.9023 12 1 8.1621 2.0593 1.1171 13 1 7.6990 0.9245 3.2096 14 1 6.6871 0.1348 1.1521 15 6 4.6808 2.5874 -1.2491 16 7 5.8965 3.4094 -1.3147 17 6 3.5946 -0.6945 -0.0003 18 6 4.6295 -1.6319 -0.0002 19 6 4.3360 -2.9662 0.0162 20 6 3.0166 -3.3981 0.0181 21 6 1.9803 -2.4906 0.0133 22 6 2.2561 -1.1270 0.0060 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5143 26 1 1.8835 2.1355 -0.0006 27 1 6.2684 3.0759 3.9808 28 1 4.6196 1.9577 -2.1368 29 1 3.8058 3.2358 -1.2027 30 1 6.7210 2.8311 -1.3765 31 1 5.8522 4.0597 -2.0849 32 1 5.6583 -1.3032 -0.0007 33 1 5.1368 -3.6908 0.0208 34 1 2.8005 -4.4562 0.0239 35 1 0.9572 -2.8365 0.0152 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:32 Heat of formation + Delta-G solvation = 40.485393 kcal Electronic energy + Delta-G solvation = -17473.067868 eV Core-core repulsion = 14856.455056 eV Total energy + Delta-G solvation = -2616.612812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.09631 -37.91410 -37.10713 -34.17239 -33.68948 -31.13896 -30.90413 -29.25938 -26.74625 -25.65637 -23.53043 -22.51461 -22.16606 -20.01444 -19.00285 -17.74027 -17.10791 -16.59484 -16.27759 -16.05246 -15.83704 -15.13496 -14.93612 -14.80978 -14.61786 -14.23095 -13.71516 -13.46862 -13.30450 -13.07761 -12.76217 -12.58097 -12.41914 -12.22772 -11.87459 -11.62332 -11.56608 -10.89342 -10.57219 -10.27678 -9.25198 -8.95868 -8.24905 -8.14006 -6.10118 0.32111 0.80872 1.37724 1.40676 1.47281 1.97123 2.11218 2.46267 3.07581 3.28749 3.89235 3.92862 4.00128 4.13050 4.23812 4.37254 4.47069 4.50710 4.62709 4.68351 4.72750 4.75983 4.91751 4.99445 5.09683 5.19882 5.34330 5.49155 5.66468 5.74424 5.82719 6.02189 6.08915 6.36666 6.49307 6.52084 6.64368 6.85114 6.92116 7.51621 9.03637 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.009139 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.476865 B = 3063.151784 C = 3528.180019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.493 5.493 3 C 0.036 3.964 4 C -0.155 4.155 5 C 0.076 3.924 6 H 0.035 0.965 7 C -0.455 4.455 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.960 5.960 11 Si 0.933 3.067 12 H -0.262 1.262 13 H -0.303 1.303 14 H -0.248 1.248 15 C 0.093 3.907 16 N -0.847 5.847 17 C -0.141 4.141 18 C -0.097 4.097 19 C -0.157 4.157 20 C -0.102 4.102 21 C -0.134 4.134 22 C 0.079 3.921 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.167 0.833 27 H 0.258 0.742 28 H 0.015 0.985 29 H 0.055 0.945 30 H 0.334 0.666 31 H 0.344 0.656 32 H 0.103 0.897 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 -11.860 -10.688 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.177 5.177 3 C -0.088 4.088 4 C -0.162 4.162 5 C 0.056 3.944 6 H 0.053 0.947 7 C -0.493 4.493 8 H 0.048 0.952 9 C -0.183 4.183 10 N -0.603 5.603 11 Si 0.760 3.240 12 H -0.187 1.187 13 H -0.230 1.230 14 H -0.173 1.173 15 C -0.038 4.038 16 N -0.377 5.377 17 C -0.146 4.146 18 C -0.116 4.116 19 C -0.176 4.176 20 C -0.121 4.121 21 C -0.154 4.154 22 C -0.028 4.028 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.111 0.889 26 H 0.184 0.816 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.176 0.824 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.458 -11.491 -9.827 17.324 hybrid contribution 1.005 -0.147 -0.366 1.080 sum -7.453 -11.638 -10.192 17.172 Atomic orbital electron populations 1.22138 0.75113 1.05120 1.03950 1.43938 1.06944 1.03355 1.63415 1.21519 0.90054 0.91185 1.06007 1.20956 0.95458 0.91716 1.08086 1.17676 0.91671 0.91275 0.93778 0.94677 1.20853 1.08065 1.17998 1.02401 0.95161 1.25744 1.00751 0.97235 0.94579 1.70053 1.35729 1.45633 1.08856 0.85984 0.80562 0.80662 0.76837 1.18670 1.23037 1.17254 1.21662 0.92584 0.94352 0.95250 1.58380 1.04173 1.23079 1.52086 1.19565 0.93721 0.93555 1.07767 1.20509 0.97533 0.93566 0.99979 1.20866 0.98051 0.94399 1.04322 1.21134 0.91330 1.00225 0.99444 1.20323 1.00925 0.88037 1.06124 1.18603 0.89795 0.89571 1.04793 0.89914 0.89276 0.88904 0.81553 0.93372 0.96726 0.92612 0.85397 0.84315 0.87905 0.84134 0.82406 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 11.03 127.77 1.41 3.01 16 2 N -0.49 -16.19 3.18 -539.26 -1.71 -17.90 16 3 C 0.04 1.41 10.82 83.00 0.90 2.31 16 4 C -0.15 -6.90 5.04 -18.63 -0.09 -6.99 16 5 C 0.08 3.62 2.32 -12.29 -0.03 3.59 16 6 H 0.04 1.71 4.51 -2.39 -0.01 1.70 16 7 C -0.45 -26.27 8.43 25.60 0.22 -26.05 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C 0.01 0.70 5.47 84.65 0.46 1.16 16 10 N -0.96 -62.62 13.96 21.45 0.30 -62.32 16 11 Si 0.93 46.91 27.24 68.60 1.87 48.78 16 12 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 14 H -0.25 -11.71 5.30 99.48 0.53 -11.18 16 15 C 0.09 3.75 5.99 86.30 0.52 4.26 16 16 N -0.85 -32.44 9.32 -186.71 -1.74 -34.18 16 17 C -0.14 -5.87 6.35 -20.20 -0.13 -6.00 16 18 C -0.10 -3.72 10.05 22.23 0.22 -3.50 16 19 C -0.16 -4.69 9.97 22.04 0.22 -4.47 16 20 C -0.10 -2.61 10.01 22.30 0.22 -2.38 16 21 C -0.13 -3.68 9.96 22.37 0.22 -3.46 16 22 C 0.08 2.80 6.81 39.03 0.27 3.07 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 25 H 0.09 1.57 8.10 -2.38 -0.02 1.55 16 26 H 0.17 6.08 8.06 -2.91 -0.02 6.06 16 27 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 28 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.33 12.11 9.05 -89.70 -0.81 11.30 16 31 H 0.34 10.59 9.08 -89.69 -0.81 9.78 16 32 H 0.10 4.07 6.97 -2.91 -0.02 4.05 16 33 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -74.94 294.33 2.42 -72.52 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.70 Total: 28.55 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.41 Total: -35.45 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.16 Total: -114.40 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.87 Total: 48.78 kcal Total: -74.94 2.42 -72.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.007 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds