Wall clock time and date at job start Mon Mar 30 2020 07:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36825 * 125.06879 * 2 1 4 4 C 1.34236 * 109.93559 * 180.02562 * 3 2 1 5 5 C 1.46488 * 106.99429 * 0.02562 * 4 3 2 6 6 C 1.39631 * 134.03049 * 180.25615 * 5 4 3 7 7 C 1.36626 * 119.76712 * 180.19741 * 6 5 4 8 8 C 1.50697 * 119.73771 * 179.77049 * 7 6 5 9 9 H 1.09000 * 109.47084 * 359.72339 * 8 7 6 10 10 C 1.50699 * 109.47049 * 119.72726 * 8 7 6 11 11 H 1.07992 * 119.99904 * 5.64432 * 10 8 7 12 12 C 1.37883 * 119.99895 * 185.64990 * 10 8 7 13 13 N 1.31511 * 119.99438 * 196.64880 * 12 10 8 14 14 Si 1.86794 * 120.00129 * 16.64635 * 12 10 8 15 15 H 1.48495 * 109.47050 * 180.02562 * 14 12 10 16 16 H 1.48502 * 109.47345 * 60.00062 * 14 12 10 17 17 H 1.48500 * 109.47029 * 300.00278 * 14 12 10 18 18 C 1.53001 * 109.47337 * 239.72791 * 8 7 6 19 19 N 1.46902 * 109.47251 * 65.84302 * 18 8 7 20 20 C 1.38827 * 120.52307 * 359.49628 * 7 6 5 21 21 C 1.37751 * 120.67092 * 0.27670 * 20 7 6 22 22 C 1.37689 * 125.05928 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46886 * 269.97816 * 1 2 3 24 24 H 1.09005 * 109.47241 * 29.97203 * 1 2 3 25 25 H 1.09000 * 109.47860 * 149.97261 * 1 2 3 26 26 H 1.08005 * 125.03022 * 359.97438 * 3 2 1 27 27 H 1.07995 * 126.50658 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.11730 * 359.94378 * 6 5 4 29 29 H 0.96996 * 120.00699 * 354.16200 * 13 12 10 30 30 H 1.08994 * 109.47503 * 185.84622 * 18 8 7 31 31 H 1.09007 * 109.46588 * 305.84769 * 18 8 7 32 32 H 1.00892 * 111.00015 * 180.02562 * 19 18 8 33 33 H 1.00899 * 111.00477 * 303.96025 * 19 18 8 34 34 H 1.08005 * 119.66588 * 180.25309 * 20 7 6 35 35 H 1.07997 * 120.11271 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7694 -0.0006 5 6 3.5945 -0.6947 -0.0016 6 6 4.6293 -1.6321 0.0020 7 6 4.3359 -2.9664 -0.0044 8 6 5.4534 -3.9775 -0.0058 9 1 6.4123 -3.4592 -0.0061 10 6 5.3499 -4.8422 1.2241 11 1 4.5048 -4.7375 1.8882 12 6 6.3344 -5.7669 1.5015 13 7 6.1047 -6.7330 2.3637 14 14 7.9940 -5.6473 0.6527 15 1 8.8696 -6.7519 1.1199 16 1 8.6245 -4.3431 0.9798 17 1 7.8072 -5.7521 -0.8167 18 6 5.3470 -4.8536 -1.2556 19 7 5.5871 -4.0335 -2.4505 20 6 3.0165 -3.3982 -0.0040 21 6 1.9802 -2.4908 -0.0028 22 6 2.2559 -1.1271 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3635 -0.8897 -0.5142 26 1 1.8834 2.1354 -0.0004 27 1 4.3937 1.4396 -0.0003 28 1 5.6582 -1.3035 0.0057 29 1 5.2757 -6.7471 2.8671 30 1 6.0901 -5.6495 -1.2058 31 1 4.3497 -5.2905 -1.3092 32 1 5.5219 -4.5896 -3.2898 33 1 4.9516 -3.2506 -2.4855 34 1 2.8004 -4.4565 -0.0050 35 1 0.9571 -2.8367 -0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261037865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:42 Heat of formation + Delta-G solvation = 56.840637 kcal Electronic energy + Delta-G solvation = -17227.692241 eV Core-core repulsion = 14611.788646 eV Total energy + Delta-G solvation = -2615.903595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88962 -37.53053 -34.54442 -32.55862 -32.34438 -30.46376 -28.87555 -27.51428 -25.79947 -23.11759 -22.13684 -21.78875 -19.89463 -19.10174 -17.45382 -16.69787 -15.70283 -15.28123 -15.10636 -14.77971 -13.78066 -13.69303 -13.42520 -13.26015 -12.84550 -12.73177 -12.49366 -12.34954 -12.06146 -11.88449 -11.31907 -10.82184 -10.43231 -10.38887 -10.31000 -9.81602 -9.64542 -9.21207 -8.84988 -8.18443 -7.90446 -7.56741 -7.14649 -6.38950 -4.04013 1.64367 2.25864 3.04147 3.05629 3.49684 3.53245 3.70731 4.52556 4.54347 4.75211 4.96410 5.12292 5.15831 5.26146 5.31924 5.49856 5.54082 5.78367 5.84735 5.99281 6.14607 6.24631 6.37891 6.49107 6.56752 6.67565 6.95207 7.09945 7.19701 7.24175 7.27561 7.59459 7.68458 7.74507 7.86365 8.10534 8.25536 8.42299 8.95199 9.64571 10.97715 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.006300 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.060803 B = 4443.132027 C = 4571.549528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.495 5.495 3 C 0.034 3.966 4 C -0.204 4.204 5 C -0.108 4.108 6 C -0.083 4.083 7 C -0.052 4.052 8 C 0.057 3.943 9 H 0.037 0.963 10 C -0.591 4.591 11 H 0.058 0.942 12 C 0.031 3.969 13 N -0.907 5.907 14 Si 1.045 2.955 15 H -0.289 1.289 16 H -0.283 1.283 17 H -0.268 1.268 18 C 0.059 3.941 19 N -0.855 5.855 20 C -0.080 4.080 21 C -0.143 4.143 22 C 0.079 3.921 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.266 0.734 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.324 0.676 33 H 0.332 0.668 34 H 0.123 0.877 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 12.716 -7.231 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.180 5.180 3 C -0.090 4.090 4 C -0.230 4.230 5 C -0.112 4.112 6 C -0.101 4.101 7 C -0.053 4.053 8 C 0.038 3.962 9 H 0.055 0.945 10 C -0.629 4.629 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.541 5.541 14 Si 0.874 3.126 15 H -0.216 1.216 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.071 4.071 19 N -0.383 5.383 20 C -0.099 4.099 21 C -0.164 4.164 22 C -0.025 4.025 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.177 0.823 27 H 0.159 0.841 28 H 0.135 0.865 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.584 12.077 -7.062 15.914 hybrid contribution -2.723 0.592 0.110 2.789 sum -10.307 12.669 -6.953 17.750 Atomic orbital electron populations 1.21804 0.78124 1.03515 1.02409 1.43674 1.05250 1.04492 1.64626 1.21600 0.90622 0.90663 1.06114 1.21642 0.95632 0.93285 1.12403 1.19190 0.92228 0.93123 1.06651 1.20219 0.97484 0.91636 1.00798 1.19746 0.95111 0.93856 0.96592 1.18162 0.92328 0.91901 0.93845 0.94537 1.21958 1.09957 1.22528 1.08470 0.92372 1.25810 1.02696 0.91409 0.97493 1.70866 1.28916 1.28164 1.26138 0.84039 0.75700 0.76177 0.76729 1.21558 1.20914 1.19419 1.22500 0.98594 0.96306 0.89713 1.58940 1.60714 1.13685 1.04982 1.20801 0.91847 0.98855 0.98385 1.19913 0.98852 0.89190 1.08395 1.18182 0.90074 0.87992 1.06248 0.91891 0.90515 0.90529 0.82266 0.84131 0.86536 0.92335 0.90857 0.96556 0.86582 0.85658 0.85945 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.03 59.84 0.66 1.45 16 2 N -0.50 -6.94 3.18 -121.80 -0.39 -7.33 16 3 C 0.03 0.44 11.29 -16.73 -0.19 0.26 16 4 C -0.20 -3.08 11.08 -37.67 -0.42 -3.50 16 5 C -0.11 -1.99 6.37 -105.14 -0.67 -2.66 16 6 C -0.08 -1.66 9.66 -39.64 -0.38 -2.04 16 7 C -0.05 -1.12 3.78 -104.99 -0.40 -1.51 16 8 C 0.06 1.36 1.72 -92.92 -0.16 1.20 16 9 H 0.04 0.91 6.51 -51.93 -0.34 0.57 16 10 C -0.59 -16.48 8.53 -34.44 -0.29 -16.77 16 11 H 0.06 1.76 7.77 -52.49 -0.41 1.35 16 12 C 0.03 0.89 5.31 -17.82 -0.09 0.79 16 13 N -0.91 -27.76 13.69 55.43 0.76 -27.00 16 14 Si 1.05 25.62 26.28 -169.99 -4.47 21.15 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.17 5.70 56.52 0.32 -5.85 16 18 C 0.06 1.29 5.81 -3.82 -0.02 1.27 16 19 N -0.86 -15.92 9.62 -10.37 -0.10 -16.02 16 20 C -0.08 -1.60 8.54 -39.54 -0.34 -1.94 16 21 C -0.14 -2.53 9.97 -39.43 -0.39 -2.92 16 22 C 0.08 1.38 6.81 -83.99 -0.57 0.81 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 27 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.12 2.26 7.91 -52.48 -0.42 1.84 16 29 H 0.27 8.14 8.73 -40.82 -0.36 7.79 16 30 H 0.07 1.72 4.79 -51.93 -0.25 1.47 16 31 H 0.02 0.35 7.17 -51.93 -0.37 -0.02 16 32 H 0.32 5.16 9.08 -39.30 -0.36 4.80 16 33 H 0.33 5.92 8.11 -39.29 -0.32 5.60 16 34 H 0.12 2.51 7.51 -52.48 -0.39 2.12 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -32.04 288.70 -7.73 -39.77 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.62 Total: 10.65 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.27 Total: -25.58 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.27 Total: -50.34 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.47 Total: 21.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.04 -7.73 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.614 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds