Wall clock time and date at job start Mon Mar 30 2020 05:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31798 * 119.09049 * 2 1 4 4 C 1.32417 * 120.79712 * 180.02562 * 3 2 1 5 5 C 1.38454 * 119.00011 * 0.02562 * 4 3 2 6 6 C 1.38526 * 118.58570 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.48366 * 180.02562 * 6 5 4 8 8 C 1.52997 * 117.49533 * 188.74902 * 7 6 5 9 9 C 1.53002 * 117.49220 * 120.09093 * 7 6 5 10 10 N 1.31779 * 119.09470 * 180.02562 * 2 1 3 11 11 C 1.51059 * 109.87330 * 179.97438 * 5 4 3 12 12 H 1.09001 * 110.30181 * 101.98589 * 11 5 4 13 13 C 1.50696 * 110.30399 * 224.04421 * 11 5 4 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 11 5 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 11 5 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.54411 * 105.15007 * 342.96725 * 11 5 4 22 22 C 1.51180 * 131.30052 * 180.02562 * 4 3 2 23 23 H 1.08998 * 109.47114 * 269.97765 * 1 2 3 24 24 H 1.09002 * 109.47422 * 29.97616 * 1 2 3 25 25 H 1.09001 * 109.46835 * 149.98090 * 1 2 3 26 26 H 1.08993 * 115.55106 * 334.42582 * 7 6 5 27 27 H 1.09001 * 117.50051 * 0.02562 * 8 7 6 28 28 H 1.09004 * 117.49464 * 145.02290 * 8 7 6 29 29 H 1.09002 * 117.49855 * 214.97391 * 9 7 6 30 30 H 1.08999 * 117.50359 * 359.97438 * 9 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.09003 * 110.81390 * 144.36982 * 21 11 5 33 33 H 1.08999 * 110.81266 * 267.88872 * 21 11 5 34 34 H 1.08993 * 110.29694 * 315.99140 * 22 4 3 35 35 H 1.09001 * 110.29278 * 78.03538 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1517 0.0000 4 6 3.4713 1.1912 -0.0005 5 6 4.1784 0.0007 -0.0016 6 6 3.4710 -1.1903 -0.0015 7 6 4.1972 -2.5108 -0.0021 8 6 3.3621 -3.7761 -0.2085 9 6 3.9418 -3.4579 1.1721 10 7 2.1478 -1.1515 -0.0005 11 6 5.6620 0.2847 -0.0026 12 1 6.0742 0.1468 0.9970 13 6 6.3658 -0.6144 -0.9861 14 1 5.8001 -1.3302 -1.5640 15 6 7.7319 -0.5224 -1.1490 16 7 8.3461 -1.3067 -2.0076 17 14 8.7102 0.7162 -0.1499 18 1 8.7853 2.0010 -0.8907 19 1 8.0411 0.9368 1.1574 20 1 10.0821 0.1952 0.0779 21 6 5.7902 1.7604 -0.4387 22 6 4.4349 2.3561 -0.0001 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 5.2008 -2.4952 -0.4270 27 1 2.2876 -3.6534 -0.3442 28 1 3.8166 -4.5931 -0.7689 29 1 4.7772 -4.0658 1.5194 30 1 3.2489 -3.1257 1.9452 31 1 9.3070 -1.2417 -2.1224 32 1 6.6142 2.2480 0.0823 33 1 5.9150 1.8356 -1.5189 34 1 4.1090 3.1165 -0.7097 35 1 4.5129 2.7818 1.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:48 Heat of formation + Delta-G solvation = 49.249370 kcal Electronic energy + Delta-G solvation = -17650.587946 eV Core-core repulsion = 15034.355169 eV Total energy + Delta-G solvation = -2616.232777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.41306 -38.36704 -38.11320 -34.71485 -33.93869 -32.36102 -30.48634 -28.62490 -25.78546 -25.47815 -23.26851 -22.70083 -22.00637 -21.00436 -19.14233 -18.40890 -17.12350 -16.56206 -16.46933 -15.67584 -15.55804 -15.23596 -14.69822 -14.24418 -14.04581 -13.62220 -13.52682 -13.34112 -13.09960 -12.90103 -12.64100 -12.47972 -12.36418 -12.14519 -11.91627 -11.69415 -11.49518 -11.42114 -11.04959 -10.78819 -10.67884 -10.08481 -9.63525 -8.25034 -6.29470 0.06512 0.08398 1.37422 1.41238 1.49869 2.37359 2.62026 2.82522 2.98107 3.08591 3.18642 3.48002 3.80499 3.92960 4.03916 4.14114 4.22726 4.25501 4.43933 4.51393 4.66890 4.73403 4.74398 4.81401 4.85756 4.93763 5.02880 5.04536 5.09654 5.21107 5.27872 5.39860 5.47679 5.60349 5.64902 6.11963 6.34187 6.72779 7.19739 7.33960 8.89981 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.009607 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.064960 B = 2913.879056 C = 3876.587764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.286 3.714 3 N -0.532 5.532 4 C 0.146 3.854 5 C -0.183 4.183 6 C 0.209 3.791 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.142 4.142 10 N -0.530 5.530 11 C 0.054 3.946 12 H 0.048 0.952 13 C -0.506 4.506 14 H 0.044 0.956 15 C 0.021 3.979 16 N -0.945 5.945 17 Si 0.932 3.068 18 H -0.259 1.259 19 H -0.241 1.241 20 H -0.297 1.297 21 C -0.125 4.125 22 C -0.058 4.058 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 3.310 6.790 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.019 3.981 3 N -0.248 5.248 4 C 0.000 4.000 5 C -0.187 4.187 6 C 0.065 3.935 7 C -0.167 4.167 8 C -0.185 4.185 9 C -0.179 4.179 10 N -0.245 5.245 11 C 0.035 3.965 12 H 0.066 0.934 13 C -0.544 4.544 14 H 0.062 0.938 15 C -0.177 4.177 16 N -0.585 5.585 17 Si 0.757 3.243 18 H -0.184 1.184 19 H -0.165 1.165 20 H -0.224 1.224 21 C -0.163 4.163 22 C -0.096 4.096 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.142 0.858 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.250 3.275 6.710 13.502 hybrid contribution 1.879 0.148 -0.117 1.888 sum -9.372 3.422 6.593 11.959 Atomic orbital electron populations 1.20573 0.82726 1.04735 1.04776 1.23945 0.99597 0.82694 0.91893 1.67537 1.09044 1.31183 1.17004 1.22692 0.89773 0.96960 0.90558 1.22239 1.00062 0.94815 1.01570 1.20491 0.88687 0.94334 0.90003 1.21380 1.00886 0.86966 1.07476 1.22953 0.99963 0.96440 0.99188 1.22934 1.03228 1.00645 0.91142 1.68020 1.08603 1.30884 1.17008 1.18579 0.87371 0.93673 0.96904 0.93422 1.21046 0.92329 1.19407 1.21600 0.93785 1.25752 0.98646 0.97454 0.95802 1.70036 1.10084 1.40973 1.37395 0.86039 0.77401 0.79856 0.81022 1.18375 1.16488 1.22412 1.22725 0.96210 0.95893 1.01517 1.21060 0.90511 0.93629 1.04367 0.88338 0.88806 0.88971 0.85835 0.87737 0.87657 0.87047 0.88804 0.92564 0.90213 0.91631 0.88052 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.32 71.23 0.73 -0.89 16 2 C 0.29 9.98 7.64 138.75 1.06 11.04 16 3 N -0.53 -19.76 10.34 -175.62 -1.82 -21.57 16 4 C 0.15 5.67 7.38 42.67 0.31 5.99 16 5 C -0.18 -7.94 5.52 -19.63 -0.11 -8.05 16 6 C 0.21 8.82 6.42 42.55 0.27 9.09 16 7 C -0.15 -5.97 5.54 -11.54 -0.06 -6.03 16 8 C -0.15 -4.81 10.04 30.62 0.31 -4.51 16 9 C -0.14 -4.51 10.24 30.62 0.31 -4.20 16 10 N -0.53 -20.29 9.40 -176.05 -1.65 -21.94 16 11 C 0.05 2.45 2.23 -11.69 -0.03 2.42 16 12 H 0.05 2.16 7.09 -2.39 -0.02 2.14 16 13 C -0.51 -27.23 7.49 25.60 0.19 -27.04 16 14 H 0.04 2.66 6.21 -2.91 -0.02 2.64 16 15 C 0.02 1.16 5.46 84.66 0.46 1.62 16 16 N -0.94 -56.49 13.96 21.45 0.30 -56.20 16 17 Si 0.93 41.20 24.77 68.60 1.70 42.90 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.24 -9.71 6.41 99.48 0.64 -9.07 16 20 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 21 C -0.13 -4.79 5.08 31.55 0.16 -4.63 16 22 C -0.06 -1.87 6.77 30.48 0.21 -1.66 16 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.12 5.90 5.07 -2.39 -0.01 5.89 16 27 H 0.10 3.30 7.61 -2.39 -0.02 3.29 16 28 H 0.11 3.11 8.14 -2.39 -0.02 3.10 16 29 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.08 2.77 5.90 -2.39 -0.01 2.76 16 33 H 0.06 2.69 7.91 -2.39 -0.02 2.67 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -64.65 282.43 3.38 -61.27 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.03 Total: 22.39 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.83 Total: -26.85 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -3.17 Total: -99.71 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.70 Total: 42.90 kcal Total: -64.65 3.38 -61.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.518 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds