Wall clock time and date at job start Mon Mar 30 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31793 * 119.09046 * 2 1 4 4 C 1.32424 * 120.79981 * 179.97438 * 3 2 1 5 5 C 1.38457 * 118.99196 * 0.02562 * 4 3 2 6 6 C 1.38525 * 118.58907 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.48226 * 180.02562 * 6 5 4 8 8 C 1.52995 * 117.49907 * 188.61726 * 7 6 5 9 9 C 1.52999 * 60.00332 * 252.51462 * 8 7 6 10 10 N 1.31784 * 119.09277 * 179.97438 * 2 1 3 11 11 C 1.51361 * 109.95094 * 180.15581 * 5 4 3 12 12 H 1.08998 * 110.26046 * 257.96578 * 11 5 4 13 13 C 1.50690 * 110.49675 * 135.70234 * 11 5 4 14 14 H 1.08000 * 120.00025 * 2.89117 * 13 11 5 15 15 C 1.37883 * 120.00361 * 182.89007 * 13 11 5 16 16 N 1.31515 * 119.99551 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00359 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47022 * 60.00380 * 17 15 13 19 19 H 1.48499 * 109.46867 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47166 * 299.99878 * 17 15 13 21 21 C 1.54423 * 105.00020 * 16.77166 * 11 5 4 22 22 C 1.51169 * 131.30738 * 180.02562 * 4 3 2 23 23 H 1.09002 * 109.46336 * 270.00600 * 1 2 3 24 24 H 1.08993 * 109.47030 * 30.00753 * 1 2 3 25 25 H 1.08999 * 109.46840 * 150.00588 * 1 2 3 26 26 H 1.09000 * 115.54879 * 334.33377 * 7 6 5 27 27 H 1.09002 * 117.49732 * 0.02562 * 8 7 6 28 28 H 1.08999 * 117.49706 * 145.01822 * 8 7 6 29 29 H 1.09000 * 117.49658 * 252.51640 * 9 8 7 30 30 H 1.08993 * 117.50083 * 107.48812 * 9 8 7 31 31 H 0.97004 * 120.00279 * 179.97438 * 16 15 13 32 32 H 1.09002 * 110.81173 * 215.76772 * 21 11 5 33 33 H 1.08998 * 110.80711 * 92.44493 * 21 11 5 34 34 H 1.08995 * 110.29998 * 44.01817 * 22 4 3 35 35 H 1.09004 * 110.37619 * 281.92639 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1478 1.1517 0.0000 4 6 3.4715 1.1912 0.0005 5 6 4.1784 0.0007 0.0005 6 6 3.4710 -1.1903 0.0005 7 6 4.1972 -2.5108 0.0011 8 6 3.3620 -3.7765 -0.2023 9 6 3.9426 -3.4565 1.1766 10 7 2.1478 -1.1516 0.0005 11 6 5.6654 0.2830 0.0050 12 1 6.0787 0.1456 -0.9942 13 6 6.3696 -0.6127 0.9912 14 1 5.8116 -1.3595 1.5364 15 6 7.7263 -0.4788 1.1976 16 7 8.4057 0.4310 0.5341 17 14 8.5990 -1.5886 2.4207 18 1 8.4374 -3.0055 2.0064 19 1 10.0435 -1.2458 2.4570 20 1 8.0103 -1.3973 3.7705 21 6 5.7905 1.7599 0.4381 22 6 4.4350 2.3560 0.0011 23 1 -0.3632 0.0001 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 5.2006 -2.4957 -0.4245 27 1 2.2873 -3.6540 -0.3369 28 1 3.8157 -4.5943 -0.7621 29 1 4.7784 -4.0639 1.5240 30 1 3.2499 -3.1236 1.9495 31 1 9.3601 0.5255 0.6795 32 1 6.6143 2.2479 -0.0828 33 1 5.9173 1.8374 1.5180 34 1 4.1094 3.1158 0.7115 35 1 4.5146 2.7833 -0.9985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:51 Heat of formation + Delta-G solvation = 57.454210 kcal Electronic energy + Delta-G solvation = -17638.918150 eV Core-core repulsion = 15023.041162 eV Total energy + Delta-G solvation = -2615.876988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78286 -36.81597 -36.39363 -32.88328 -32.24445 -30.64635 -28.55627 -26.70820 -24.15996 -23.88737 -21.94647 -21.01361 -20.41734 -19.30533 -17.23215 -16.14971 -15.73160 -14.82780 -14.74811 -14.35202 -13.79181 -13.43403 -13.12967 -12.42879 -12.28857 -12.26691 -12.21016 -11.48383 -11.32447 -11.09691 -11.03532 -10.99362 -10.73947 -10.59001 -10.41083 -10.10372 -9.97262 -9.48100 -9.24063 -9.16345 -8.55794 -8.45442 -7.93510 -6.12149 -4.15255 1.68546 1.70354 3.26122 3.31584 3.34333 4.12615 4.33409 4.36081 4.50464 4.60142 5.01702 5.20447 5.38742 5.52407 5.55376 5.62671 5.73400 5.78453 5.79377 5.91906 5.97860 6.05207 6.09606 6.25562 6.33502 6.53674 6.58042 6.68417 6.82627 6.91245 7.06415 7.15435 7.43666 7.61631 7.75367 7.87282 8.24598 8.77897 8.85982 9.48955 10.96999 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.009474 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.297423 B = 2954.638206 C = 3979.027953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.285 3.715 3 N -0.525 5.525 4 C 0.147 3.853 5 C -0.147 4.147 6 C 0.207 3.793 7 C -0.092 4.092 8 C -0.172 4.172 9 C -0.156 4.156 10 N -0.524 5.524 11 C 0.089 3.911 12 H 0.049 0.951 13 C -0.511 4.511 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.090 4.090 22 C -0.076 4.076 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 -2.082 -1.239 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.017 3.983 3 N -0.240 5.240 4 C 0.001 3.999 5 C -0.151 4.151 6 C 0.063 3.937 7 C -0.111 4.111 8 C -0.209 4.209 9 C -0.194 4.194 10 N -0.239 5.239 11 C 0.070 3.930 12 H 0.067 0.933 13 C -0.549 4.549 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.129 4.129 22 C -0.114 4.114 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.153 0.847 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.388 -1.995 -1.266 9.680 hybrid contribution 1.458 -0.466 0.748 1.704 sum -7.930 -2.461 -0.519 8.319 Atomic orbital electron populations 1.20366 0.86600 1.03163 1.02951 1.22798 0.97329 0.83319 0.94808 1.67374 1.09840 1.30762 1.16024 1.22374 0.88953 0.97027 0.91504 1.22714 1.01860 0.93288 0.97246 1.20216 0.87975 0.93929 0.91627 1.20940 0.99752 0.85949 1.04492 1.22960 1.00341 0.98041 0.99545 1.22819 1.02869 1.02169 0.91544 1.67854 1.09459 1.30343 1.16221 1.18277 0.83523 0.93168 0.98042 0.93319 1.21045 0.92709 1.18109 1.23063 0.91748 1.24932 0.97406 0.95383 0.95902 1.69932 1.08162 1.33325 1.41217 0.86678 0.78519 0.81164 0.81851 1.20120 1.21295 1.20272 1.22322 0.92298 0.97030 1.01214 1.21238 0.94174 0.94059 1.01895 0.90629 0.90406 0.90376 0.84658 0.88076 0.89109 0.88573 0.89310 0.92784 0.90324 0.91829 0.90974 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.32 36.01 0.37 -0.61 16 2 C 0.29 5.39 7.64 -157.20 -1.20 4.18 16 3 N -0.52 -10.67 10.34 -6.86 -0.07 -10.74 16 4 C 0.15 3.11 7.38 -82.03 -0.60 2.50 16 5 C -0.15 -3.27 5.54 -104.11 -0.58 -3.85 16 6 C 0.21 4.34 6.42 -82.25 -0.53 3.81 16 7 C -0.09 -1.75 4.26 -91.77 -0.39 -2.15 16 8 C -0.17 -2.68 10.04 -26.73 -0.27 -2.95 16 9 C -0.16 -2.62 10.11 -26.73 -0.27 -2.89 16 10 N -0.52 -10.36 9.40 -7.00 -0.07 -10.43 16 11 C 0.09 2.11 2.67 -91.86 -0.25 1.87 16 12 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.51 -13.00 7.18 -34.44 -0.25 -13.25 16 14 H 0.06 1.64 6.36 -52.49 -0.33 1.31 16 15 C 0.07 1.71 5.33 -17.82 -0.09 1.62 16 16 N -0.89 -23.79 12.31 55.43 0.68 -23.11 16 17 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.09 -1.98 5.62 -25.26 -0.14 -2.12 16 22 C -0.08 -1.44 6.77 -26.92 -0.18 -1.62 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.14 2.72 7.32 -51.93 -0.38 2.34 16 27 H 0.10 1.59 7.61 -51.93 -0.40 1.20 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.08 1.76 7.88 -51.93 -0.41 1.35 16 33 H 0.06 1.48 7.90 -51.93 -0.41 1.07 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -27.75 290.83 -9.34 -37.09 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.87 Total: 2.95 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -4.38 Total: -15.46 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.55 Total: -44.28 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.75 -9.34 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.546 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds