Wall clock time and date at job start Mon Mar 30 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31793 * 119.09046 * 2 1 4 4 C 1.32424 * 120.79981 * 179.97438 * 3 2 1 5 5 C 1.38457 * 118.99196 * 0.02562 * 4 3 2 6 6 C 1.38525 * 118.58907 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.48226 * 180.02562 * 6 5 4 8 8 C 1.52995 * 117.49907 * 188.61726 * 7 6 5 9 9 C 1.52999 * 60.00332 * 252.51462 * 8 7 6 10 10 N 1.31784 * 119.09277 * 179.97438 * 2 1 3 11 11 C 1.51361 * 109.95094 * 180.15581 * 5 4 3 12 12 H 1.08998 * 110.26046 * 257.96578 * 11 5 4 13 13 C 1.50690 * 110.49675 * 135.70234 * 11 5 4 14 14 H 1.08000 * 120.00025 * 2.89117 * 13 11 5 15 15 C 1.37883 * 120.00361 * 182.89007 * 13 11 5 16 16 N 1.31515 * 119.99551 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00359 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47022 * 60.00380 * 17 15 13 19 19 H 1.48499 * 109.46867 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47166 * 299.99878 * 17 15 13 21 21 C 1.54423 * 105.00020 * 16.77166 * 11 5 4 22 22 C 1.51169 * 131.30738 * 180.02562 * 4 3 2 23 23 H 1.09002 * 109.46336 * 270.00600 * 1 2 3 24 24 H 1.08993 * 109.47030 * 30.00753 * 1 2 3 25 25 H 1.08999 * 109.46840 * 150.00588 * 1 2 3 26 26 H 1.09000 * 115.54879 * 334.33377 * 7 6 5 27 27 H 1.09002 * 117.49732 * 0.02562 * 8 7 6 28 28 H 1.08999 * 117.49706 * 145.01822 * 8 7 6 29 29 H 1.09000 * 117.49658 * 252.51640 * 9 8 7 30 30 H 1.08993 * 117.50083 * 107.48812 * 9 8 7 31 31 H 0.97004 * 120.00279 * 179.97438 * 16 15 13 32 32 H 1.09002 * 110.81173 * 215.76772 * 21 11 5 33 33 H 1.08998 * 110.80711 * 92.44493 * 21 11 5 34 34 H 1.08995 * 110.29998 * 44.01817 * 22 4 3 35 35 H 1.09004 * 110.37619 * 281.92639 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1478 1.1517 0.0000 4 6 3.4715 1.1912 0.0005 5 6 4.1784 0.0007 0.0005 6 6 3.4710 -1.1903 0.0005 7 6 4.1972 -2.5108 0.0011 8 6 3.3620 -3.7765 -0.2023 9 6 3.9426 -3.4565 1.1766 10 7 2.1478 -1.1516 0.0005 11 6 5.6654 0.2830 0.0050 12 1 6.0787 0.1456 -0.9942 13 6 6.3696 -0.6127 0.9912 14 1 5.8116 -1.3595 1.5364 15 6 7.7263 -0.4788 1.1976 16 7 8.4057 0.4310 0.5341 17 14 8.5990 -1.5886 2.4207 18 1 8.4374 -3.0055 2.0064 19 1 10.0435 -1.2458 2.4570 20 1 8.0103 -1.3973 3.7705 21 6 5.7905 1.7599 0.4381 22 6 4.4350 2.3560 0.0011 23 1 -0.3632 0.0001 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 5.2006 -2.4957 -0.4245 27 1 2.2873 -3.6540 -0.3369 28 1 3.8157 -4.5943 -0.7621 29 1 4.7784 -4.0639 1.5240 30 1 3.2499 -3.1236 1.9495 31 1 9.3601 0.5255 0.6795 32 1 6.6143 2.2479 -0.0828 33 1 5.9173 1.8374 1.5180 34 1 4.1094 3.1158 0.7115 35 1 4.5146 2.7833 -0.9985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:51 Heat of formation + Delta-G solvation = 43.659790 kcal Electronic energy + Delta-G solvation = -17639.516321 eV Core-core repulsion = 15023.041162 eV Total energy + Delta-G solvation = -2616.475159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34051 -38.26416 -38.01541 -34.67419 -33.86286 -32.12083 -30.21379 -28.27734 -25.72644 -25.69950 -23.25347 -22.50133 -22.08587 -20.92103 -18.90642 -17.98905 -17.16447 -16.64666 -16.36032 -15.80718 -15.28909 -14.99717 -14.68435 -14.04789 -13.99336 -13.48826 -13.35839 -13.17286 -12.88479 -12.82438 -12.64442 -12.55471 -12.37333 -12.29005 -12.02636 -11.76919 -11.39066 -11.21129 -11.00963 -10.74115 -10.50208 -10.05196 -9.59163 -8.10867 -6.18699 0.10815 0.11862 1.43500 1.44754 1.51294 2.44439 2.66541 2.87454 3.04381 3.16563 3.21140 3.55721 3.90768 4.04080 4.09764 4.18256 4.25397 4.39229 4.45726 4.67022 4.70778 4.75626 4.77665 4.88774 4.95404 5.06003 5.11796 5.17001 5.26686 5.31455 5.36704 5.57572 5.64843 5.73978 5.84882 6.16765 6.32713 6.85708 7.22815 7.47291 8.97583 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.009474 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.297423 B = 2954.638206 C = 3979.027953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.282 3.718 3 N -0.534 5.534 4 C 0.142 3.858 5 C -0.184 4.184 6 C 0.204 3.796 7 C -0.124 4.124 8 C -0.140 4.140 9 C -0.151 4.151 10 N -0.527 5.527 11 C 0.090 3.910 12 H 0.019 0.981 13 C -0.515 4.515 14 H 0.060 0.940 15 C 0.022 3.978 16 N -0.915 5.915 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.065 4.065 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 -2.919 -0.890 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.015 3.985 3 N -0.250 5.250 4 C -0.004 4.004 5 C -0.188 4.188 6 C 0.060 3.940 7 C -0.143 4.143 8 C -0.177 4.177 9 C -0.189 4.189 10 N -0.242 5.242 11 C 0.070 3.930 12 H 0.037 0.963 13 C -0.553 4.553 14 H 0.078 0.922 15 C -0.177 4.177 16 N -0.554 5.554 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.120 4.120 22 C -0.103 4.103 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.138 -2.838 -0.918 11.530 hybrid contribution 1.916 -0.233 0.613 2.025 sum -9.222 -3.071 -0.305 9.724 Atomic orbital electron populations 1.20561 0.82744 1.04827 1.04575 1.23928 0.99568 0.82716 0.92295 1.67520 1.09098 1.31410 1.16967 1.22637 0.89684 0.97152 0.90881 1.22647 1.00969 0.94670 1.00532 1.20535 0.88681 0.94345 0.90446 1.20872 0.99580 0.86694 1.07136 1.23034 1.00085 0.96245 0.98376 1.22875 1.03225 1.01150 0.91646 1.68000 1.08612 1.30703 1.16911 1.18105 0.84767 0.94000 0.96088 0.96311 1.21250 0.93007 1.18080 1.22998 0.92203 1.25578 0.98087 0.96610 0.97438 1.70036 1.08201 1.34641 1.42509 0.85812 0.77384 0.79953 0.79784 1.19268 1.21191 1.20256 1.22077 0.93889 0.96308 0.99725 1.21157 0.91848 0.93804 1.03467 0.88804 0.88844 0.88616 0.86732 0.87759 0.86575 0.87444 0.89730 0.92926 0.91404 0.93669 0.88910 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.32 71.24 0.74 -0.91 16 2 C 0.28 10.09 7.64 138.76 1.06 11.15 16 3 N -0.53 -20.93 10.34 -175.61 -1.82 -22.75 16 4 C 0.14 5.94 7.38 42.67 0.31 6.26 16 5 C -0.18 -8.32 5.54 -19.53 -0.11 -8.43 16 6 C 0.20 8.54 6.42 42.55 0.27 8.82 16 7 C -0.12 -4.67 4.26 -11.54 -0.05 -4.71 16 8 C -0.14 -4.08 10.04 30.59 0.31 -3.77 16 9 C -0.15 -4.86 10.11 30.60 0.31 -4.56 16 10 N -0.53 -20.10 9.40 -176.05 -1.65 -21.76 16 11 C 0.09 4.41 2.67 -11.60 -0.03 4.38 16 12 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 13 C -0.52 -26.91 7.18 25.60 0.18 -26.72 16 14 H 0.06 3.11 6.36 -2.91 -0.02 3.09 16 15 C 0.02 1.18 5.33 84.66 0.45 1.63 16 16 N -0.91 -50.23 12.31 21.45 0.26 -49.96 16 17 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.08 -3.67 5.62 31.55 0.18 -3.49 16 22 C -0.07 -2.44 6.77 30.47 0.21 -2.24 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.11 4.75 7.32 -2.39 -0.02 4.74 16 27 H 0.10 3.00 7.61 -2.39 -0.02 2.98 16 28 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.07 3.15 7.88 -2.39 -0.02 3.13 16 33 H 0.04 2.15 7.90 -2.39 -0.02 2.14 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 Total: -1.00 -59.87 290.83 3.73 -56.14 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.08 Total: 16.90 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.83 Total: -22.60 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -3.21 Total: -94.47 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -59.87 3.73 -56.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.801 kcal (2) G-P(sol) polarization free energy of solvation -59.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds