Wall clock time and date at job start Mon Mar 30 2020 07:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99732 * 2 1 4 4 C 1.39966 * 119.99816 * 180.02562 * 2 1 3 5 5 C 1.39419 * 119.88922 * 0.02562 * 4 2 1 6 6 C 1.37656 * 120.59853 * 179.97438 * 5 4 2 7 7 C 1.39110 * 120.02504 * 359.97085 * 6 5 4 8 8 N 1.37945 * 133.32744 * 180.02562 * 7 6 5 9 9 H 0.97001 * 125.08373 * 0.02562 * 8 7 6 10 10 C 1.36797 * 109.84114 * 179.73955 * 8 7 6 11 11 C 1.34249 * 109.93974 * 0.26570 * 10 8 7 12 12 C 1.50696 * 126.48664 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47565 * 264.98357 * 12 11 10 14 14 H 1.08006 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00325 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00164 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47151 * 59.99460 * 17 15 13 19 19 H 1.48500 * 109.47275 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46659 * 299.99534 * 17 15 13 21 21 C 1.40612 * 119.55510 * 0.20105 * 7 6 5 22 22 C 1.38224 * 119.88143 * 180.39188 * 4 2 1 23 23 H 1.08996 * 109.47080 * 239.99598 * 1 2 3 24 24 H 1.08993 * 109.47515 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47045 * 119.99946 * 1 2 3 26 26 H 1.08999 * 109.47026 * 270.00274 * 3 2 1 27 27 H 1.09002 * 109.46721 * 30.00466 * 3 2 1 28 28 H 1.08993 * 109.46674 * 149.99956 * 3 2 1 29 29 H 1.08000 * 119.69969 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.98177 * 180.02562 * 6 5 4 31 31 H 1.07999 * 125.03085 * 180.27087 * 10 8 7 32 32 H 1.09004 * 109.47127 * 24.98282 * 12 11 10 33 33 H 1.09002 * 109.47108 * 144.98056 * 12 11 10 34 34 H 0.97003 * 120.00065 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.20551 * 359.52273 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1649 -1.2122 -0.0005 5 6 1.4654 -2.4182 -0.0016 6 6 2.1388 -3.6188 -0.0027 7 6 3.5298 -3.6367 -0.0033 8 7 4.4634 -4.6522 -0.0048 9 1 4.2563 -5.5999 -0.0061 10 6 5.7249 -4.1232 -0.0107 11 6 5.6591 -2.7823 -0.0072 12 6 6.8253 -1.8279 -0.0110 13 6 7.1427 -1.4168 1.4037 14 1 6.5580 -1.8073 2.2235 15 6 8.1787 -0.5414 1.6513 16 7 8.8903 -0.0655 0.6529 17 14 8.5717 -0.0313 3.4048 18 1 8.9191 -1.2337 4.2040 19 1 9.7210 0.9091 3.4011 20 1 7.3876 0.6357 4.0033 21 6 4.2391 -2.4225 0.0014 22 6 3.5471 -1.2094 0.0077 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3791 1.5835 -1.0277 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 0.3854 -2.4104 -0.0016 30 1 1.5870 -4.5471 -0.0039 31 1 6.6386 -4.6990 -0.0172 32 1 7.6942 -2.3177 -0.4506 33 1 6.5704 -0.9451 -0.5974 34 1 9.6190 0.5506 0.8270 35 1 4.0886 -0.2749 0.0067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261042094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:01 Heat of formation + Delta-G solvation = 62.946136 kcal Electronic energy + Delta-G solvation = -16997.257301 eV Core-core repulsion = 14381.618460 eV Total energy + Delta-G solvation = -2615.638841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44953 -37.83259 -34.49592 -33.33611 -31.49113 -29.57659 -28.40691 -27.74911 -26.33729 -24.08297 -22.84043 -21.72710 -20.18216 -18.50989 -17.08768 -16.22067 -16.06233 -15.51896 -14.75821 -14.72745 -14.38974 -13.59921 -13.44457 -13.13137 -12.48560 -12.30564 -12.23732 -12.09190 -11.93318 -11.74134 -11.54520 -11.18581 -10.97259 -10.69851 -10.45821 -10.03995 -9.60822 -9.35550 -8.94980 -8.46373 -8.29255 -7.02888 -6.36249 -5.88986 -3.93150 1.75360 2.37253 3.38589 3.42118 3.44908 3.50707 3.63319 3.88447 4.51604 4.63023 5.16223 5.21995 5.41910 5.43952 5.47622 5.52285 5.72824 5.75094 5.82288 5.92886 6.04095 6.05476 6.23898 6.39654 6.59214 6.76394 6.83629 7.06109 7.25702 7.57527 7.64067 7.69579 7.81082 7.98684 8.05874 8.09183 8.31405 8.53240 9.12291 9.69566 11.18375 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.007312 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.452579 B = 3828.490924 C = 4836.438727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.647 5.647 3 C 0.096 3.904 4 C 0.167 3.833 5 C -0.165 4.165 6 C -0.103 4.103 7 C 0.052 3.948 8 N -0.609 5.609 9 H 0.404 0.596 10 C 0.018 3.982 11 C -0.121 4.121 12 C 0.082 3.918 13 C -0.502 4.502 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.054 4.054 22 C -0.134 4.134 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 -3.589 -2.220 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.363 5.363 3 C -0.047 4.047 4 C 0.068 3.932 5 C -0.187 4.187 6 C -0.124 4.124 7 C -0.055 4.055 8 N -0.214 5.214 9 H 0.239 0.761 10 C -0.105 4.105 11 C -0.128 4.128 12 C 0.045 3.955 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.060 4.060 22 C -0.157 4.157 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.178 0.822 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.574 -3.442 -2.256 15.144 hybrid contribution 0.168 -0.125 1.044 1.065 sum -14.406 -3.567 -1.212 14.890 Atomic orbital electron populations 1.21420 0.80532 1.01491 1.00388 1.46091 1.04072 1.03070 1.83105 1.21591 0.97659 0.84716 1.00743 1.17403 0.90757 0.85170 0.99853 1.20150 0.98429 0.90480 1.09653 1.19583 0.90097 0.97293 1.05428 1.18157 0.90557 0.88433 1.08345 1.41551 1.04761 1.06823 1.68301 0.76115 1.21527 0.86607 0.94364 1.07993 1.21173 0.93392 0.93420 1.04776 1.17670 0.88733 0.92147 0.96997 1.21123 1.14492 1.26012 0.92456 0.92768 1.24992 0.96294 0.96336 0.96797 1.69950 1.20774 1.32477 1.30594 0.86682 0.77739 0.78399 0.85343 1.20349 1.21368 1.20307 1.18995 0.93321 0.91300 1.02359 1.20073 0.91014 0.97652 1.06948 0.93584 0.91610 0.93584 0.93987 0.92370 0.90825 0.86657 0.87156 0.82185 0.95755 0.95650 0.93022 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 9.40 59.85 0.56 1.71 16 2 N -0.65 -9.54 3.42 -187.51 -0.64 -10.18 16 3 C 0.10 1.29 10.16 59.85 0.61 1.90 16 4 C 0.17 2.92 6.55 -83.71 -0.55 2.37 16 5 C -0.16 -2.59 9.28 -39.35 -0.37 -2.96 16 6 C -0.10 -1.63 10.06 -39.47 -0.40 -2.03 16 7 C 0.05 0.96 7.27 -83.89 -0.61 0.35 16 8 N -0.61 -10.15 6.08 -10.61 -0.06 -10.22 16 9 H 0.40 5.06 8.96 -40.82 -0.37 4.69 16 10 C 0.02 0.35 11.73 -16.74 -0.20 0.15 16 11 C -0.12 -2.78 5.50 -102.71 -0.57 -3.34 16 12 C 0.08 2.19 5.50 -29.04 -0.16 2.03 16 13 C -0.50 -14.46 9.09 -34.44 -0.31 -14.77 16 14 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.05 -1.17 6.34 -105.14 -0.67 -1.84 16 22 C -0.13 -2.73 9.26 -39.05 -0.36 -3.09 16 23 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 24 H 0.07 0.58 7.79 -51.93 -0.40 0.17 16 25 H 0.05 0.47 7.94 -51.93 -0.41 0.06 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 28 H 0.07 1.12 6.18 -51.93 -0.32 0.80 16 29 H 0.12 1.49 6.70 -52.49 -0.35 1.14 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 2.64 6.12 -52.49 -0.32 2.32 16 LS Contribution 295.41 15.07 4.45 4.45 Total: -1.00 -32.61 295.41 -8.30 -40.91 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.66 Total: 2.24 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -3.11 Total: -17.99 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.03 Total: -46.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.61 -8.30 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.860 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds