Wall clock time and date at job start Mon Mar 30 2020 07:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99732 * 2 1 4 4 C 1.39966 * 119.99816 * 180.02562 * 2 1 3 5 5 C 1.39419 * 119.88922 * 0.02562 * 4 2 1 6 6 C 1.37656 * 120.59853 * 179.97438 * 5 4 2 7 7 C 1.39110 * 120.02504 * 359.97085 * 6 5 4 8 8 N 1.37945 * 133.32744 * 180.02562 * 7 6 5 9 9 H 0.97001 * 125.08373 * 0.02562 * 8 7 6 10 10 C 1.36797 * 109.84114 * 179.73955 * 8 7 6 11 11 C 1.34249 * 109.93974 * 0.26570 * 10 8 7 12 12 C 1.50696 * 126.48664 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47565 * 264.98357 * 12 11 10 14 14 H 1.08006 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00325 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00164 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47151 * 59.99460 * 17 15 13 19 19 H 1.48500 * 109.47275 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46659 * 299.99534 * 17 15 13 21 21 C 1.40612 * 119.55510 * 0.20105 * 7 6 5 22 22 C 1.38224 * 119.88143 * 180.39188 * 4 2 1 23 23 H 1.08996 * 109.47080 * 239.99598 * 1 2 3 24 24 H 1.08993 * 109.47515 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47045 * 119.99946 * 1 2 3 26 26 H 1.08999 * 109.47026 * 270.00274 * 3 2 1 27 27 H 1.09002 * 109.46721 * 30.00466 * 3 2 1 28 28 H 1.08993 * 109.46674 * 149.99956 * 3 2 1 29 29 H 1.08000 * 119.69969 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.98177 * 180.02562 * 6 5 4 31 31 H 1.07999 * 125.03085 * 180.27087 * 10 8 7 32 32 H 1.09004 * 109.47127 * 24.98282 * 12 11 10 33 33 H 1.09002 * 109.47108 * 144.98056 * 12 11 10 34 34 H 0.97003 * 120.00065 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.20551 * 359.52273 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1649 -1.2122 -0.0005 5 6 1.4654 -2.4182 -0.0016 6 6 2.1388 -3.6188 -0.0027 7 6 3.5298 -3.6367 -0.0033 8 7 4.4634 -4.6522 -0.0048 9 1 4.2563 -5.5999 -0.0061 10 6 5.7249 -4.1232 -0.0107 11 6 5.6591 -2.7823 -0.0072 12 6 6.8253 -1.8279 -0.0110 13 6 7.1427 -1.4168 1.4037 14 1 6.5580 -1.8073 2.2235 15 6 8.1787 -0.5414 1.6513 16 7 8.8903 -0.0655 0.6529 17 14 8.5717 -0.0313 3.4048 18 1 8.9191 -1.2337 4.2040 19 1 9.7210 0.9091 3.4011 20 1 7.3876 0.6357 4.0033 21 6 4.2391 -2.4225 0.0014 22 6 3.5471 -1.2094 0.0077 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3791 1.5835 -1.0277 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 0.3854 -2.4104 -0.0016 30 1 1.5870 -4.5471 -0.0039 31 1 6.6386 -4.6990 -0.0172 32 1 7.6942 -2.3177 -0.4506 33 1 6.5704 -0.9451 -0.5974 34 1 9.6190 0.5506 0.8270 35 1 4.0886 -0.2749 0.0067 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261042094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:01 Heat of formation + Delta-G solvation = 42.865455 kcal Electronic energy + Delta-G solvation = -16998.128064 eV Core-core repulsion = 14381.618460 eV Total energy + Delta-G solvation = -2616.509604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88120 -39.09909 -35.80647 -35.35474 -33.23086 -31.10707 -29.72081 -29.04269 -28.03871 -25.29761 -24.89997 -23.07636 -21.49254 -20.06056 -18.61837 -18.32212 -17.43024 -16.83914 -16.44801 -15.92554 -15.84870 -15.06517 -14.76607 -14.50382 -14.28429 -13.81351 -13.74986 -13.40918 -13.36087 -13.11410 -12.78968 -12.76732 -12.57095 -12.46277 -12.25405 -11.83005 -11.57828 -11.27164 -10.54558 -10.35499 -9.88147 -8.53661 -8.12490 -7.66309 -6.25255 0.36011 0.99129 1.38274 1.41813 1.49884 2.03859 2.38137 2.45444 2.55326 3.15525 3.16864 3.96910 4.14072 4.27001 4.36963 4.48646 4.54853 4.59383 4.66476 4.84294 4.85667 4.90090 4.95734 4.97766 5.19402 5.25689 5.39825 5.43077 5.55229 5.76014 5.83406 5.89214 6.10650 6.34381 6.34764 6.55915 6.74628 6.86329 7.05030 7.42203 8.95506 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.007312 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.452579 B = 3828.490924 C = 4836.438727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.652 5.652 3 C 0.094 3.906 4 C 0.175 3.825 5 C -0.163 4.163 6 C -0.084 4.084 7 C 0.037 3.963 8 N -0.586 5.586 9 H 0.428 0.572 10 C 0.046 3.954 11 C -0.184 4.184 12 C 0.097 3.903 13 C -0.518 4.518 14 H 0.046 0.954 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.273 1.273 21 C -0.087 4.087 22 C -0.181 4.181 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.184 0.816 32 H 0.003 0.997 33 H -0.013 1.013 34 H 0.264 0.736 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.545 -5.042 -1.177 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.367 5.367 3 C -0.049 4.049 4 C 0.074 3.926 5 C -0.185 4.185 6 C -0.105 4.105 7 C -0.070 4.070 8 N -0.193 5.193 9 H 0.268 0.732 10 C -0.080 4.080 11 C -0.192 4.192 12 C 0.060 3.940 13 C -0.557 4.557 14 H 0.064 0.936 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.203 1.203 20 H -0.198 1.198 21 C -0.092 4.092 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.201 0.799 32 H 0.022 0.978 33 H 0.005 0.995 34 H 0.073 0.927 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.524 -4.915 -1.217 18.241 hybrid contribution 0.946 0.349 0.658 1.204 sum -16.578 -4.566 -0.559 17.204 Atomic orbital electron populations 1.21701 0.77707 1.03571 1.01406 1.46421 1.05842 1.02355 1.82046 1.21628 0.97043 0.85333 1.00927 1.17620 0.89819 0.87224 0.97907 1.20597 1.00223 0.89428 1.08265 1.20089 0.88863 0.99222 1.02318 1.18384 0.91776 0.87453 1.09379 1.41413 1.03389 1.07844 1.66621 0.73247 1.21698 0.88388 0.93280 1.04658 1.20899 0.93292 0.94641 1.10341 1.17279 0.89783 0.91592 0.95352 1.21384 1.14617 1.26461 0.93202 0.93604 1.25886 0.95962 0.96102 1.01421 1.70080 1.21271 1.33003 1.32963 0.85579 0.77727 0.78415 0.79798 1.19141 1.20315 1.19845 1.19188 0.93022 0.93228 1.03768 1.19988 0.92714 0.96433 1.11372 0.92494 0.89274 0.92331 0.93785 0.89220 0.93825 0.82837 0.82717 0.79866 0.97835 0.99519 0.92724 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 9.40 127.77 1.20 2.99 16 2 N -0.65 -18.38 3.42 -747.15 -2.55 -20.93 16 3 C 0.09 2.56 10.16 127.77 1.30 3.86 16 4 C 0.18 6.02 6.55 38.12 0.25 6.27 16 5 C -0.16 -4.58 9.28 22.42 0.21 -4.37 16 6 C -0.08 -2.36 10.06 22.34 0.22 -2.14 16 7 C 0.04 1.32 7.27 38.97 0.28 1.60 16 8 N -0.59 -18.37 6.08 -187.49 -1.14 -19.51 16 9 H 0.43 9.22 8.96 -92.71 -0.83 8.39 16 10 C 0.05 1.76 11.73 83.01 0.97 2.74 16 11 C -0.18 -8.96 5.50 -18.62 -0.10 -9.07 16 12 C 0.10 5.64 5.50 29.10 0.16 5.80 16 13 C -0.52 -31.52 9.09 25.60 0.23 -31.29 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 17 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 21 C -0.09 -3.90 6.34 -20.20 -0.13 -4.03 16 22 C -0.18 -7.86 9.26 22.61 0.21 -7.65 16 23 H 0.06 0.94 7.94 -2.39 -0.02 0.93 16 24 H 0.09 1.22 7.79 -2.39 -0.02 1.20 16 25 H 0.06 0.95 7.94 -2.39 -0.02 0.93 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.83 7.92 -2.39 -0.02 1.81 16 28 H 0.04 1.45 6.18 -2.39 -0.01 1.43 16 29 H 0.15 3.13 6.70 -2.91 -0.02 3.11 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.18 6.02 8.06 -2.91 -0.02 5.99 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.09 4.47 6.12 -2.91 -0.02 4.46 16 Total: -1.00 -75.80 295.41 4.15 -71.64 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.26 Total: 13.25 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 5.27 Total: -34.61 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -3.41 Total: -98.55 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.80 4.15 -71.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261042094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.508 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds