Wall clock time and date at job start Mon Mar 30 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37791 * 120.10988 * 2 1 4 4 C 1.38787 * 120.67075 * 180.02562 * 3 2 1 5 5 C 1.36654 * 120.52462 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.11969 * 180.02562 * 5 4 3 7 7 C 1.39594 * 119.76681 * 0.04385 * 5 4 3 8 8 C 1.46484 * 134.03265 * 179.97438 * 7 5 4 9 9 C 1.50699 * 126.50565 * 359.97438 * 8 7 5 10 10 H 1.09000 * 109.46916 * 325.00064 * 9 8 7 11 11 N 1.46899 * 109.47571 * 204.99866 * 9 8 7 12 12 C 1.50706 * 109.46824 * 84.99397 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.34239 * 106.99579 * 180.24014 * 8 7 5 21 21 N 1.36833 * 109.94108 * 359.60409 * 20 8 7 22 22 H 0.96996 * 125.06523 * 180.12999 * 21 20 8 23 23 C 1.37690 * 109.86897 * 0.41104 * 21 20 8 24 24 H 1.09000 * 109.47315 * 269.98256 * 1 2 3 25 25 H 1.08999 * 109.47197 * 29.98507 * 1 2 3 26 26 H 1.09004 * 109.46947 * 149.98061 * 1 2 3 27 27 H 1.08003 * 119.66382 * 0.03653 * 3 2 1 28 28 H 1.08005 * 119.73481 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.46990 * 270.01946 * 6 5 4 30 30 H 1.09000 * 109.46943 * 30.01399 * 6 5 4 31 31 H 1.09002 * 109.47096 * 150.01922 * 6 5 4 32 32 H 1.00899 * 110.99492 * 299.99890 * 11 9 8 33 33 H 1.00898 * 110.99366 * 63.95282 * 11 9 8 34 34 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 35 35 H 1.08006 * 125.03116 * 179.76259 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1920 0.0000 4 6 3.5860 1.2056 -0.0005 5 6 4.2916 0.0353 -0.0005 6 6 5.7984 0.0607 -0.0005 7 6 3.6117 -1.1839 -0.0009 8 6 4.0355 -2.5861 -0.0015 9 6 5.4545 -3.0937 -0.0024 10 1 6.0798 -2.4233 -0.5921 11 7 5.4925 -4.4404 -0.5881 12 6 5.9699 -3.1466 1.4127 13 1 5.3335 -2.8433 2.2309 14 6 7.2540 -3.5821 1.6628 15 7 7.7036 -3.6287 2.8978 16 14 8.3550 -4.1059 0.2476 17 1 8.1776 -5.5582 -0.0062 18 1 7.9899 -3.3420 -0.9724 19 1 9.7726 -3.8338 0.5963 20 6 2.9203 -3.3331 -0.0071 21 7 1.8167 -2.5242 -0.0012 22 1 0.8979 -2.8351 -0.0017 23 6 2.2048 -1.2031 -0.0008 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6545 2.1252 0.0006 28 1 4.1125 2.1486 -0.0001 29 1 6.1617 0.0672 -1.0283 30 1 6.1467 0.9565 0.5135 31 1 6.1767 -0.8233 0.5130 32 1 4.9200 -5.0810 -0.0589 33 1 5.2125 -4.4211 -1.5573 34 1 8.6069 -3.9354 3.0738 35 1 2.8974 -4.4129 -0.0126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:09 Heat of formation + Delta-G solvation = 45.996087 kcal Electronic energy + Delta-G solvation = -17541.485708 eV Core-core repulsion = 14925.111858 eV Total energy + Delta-G solvation = -2616.373850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86748 -36.90532 -35.15098 -33.25579 -31.72552 -29.37093 -28.96858 -27.92201 -26.25494 -24.29432 -22.16564 -21.45758 -21.06796 -17.96971 -16.89398 -16.77514 -15.72668 -14.78854 -14.71620 -14.28854 -14.08147 -13.87337 -13.30311 -12.99055 -12.81656 -12.57343 -12.44621 -12.27336 -11.92813 -11.60717 -11.34378 -10.74808 -10.68455 -10.64693 -10.40542 -10.29100 -9.80533 -9.25780 -8.55558 -8.47804 -7.73198 -7.65664 -6.88073 -5.95177 -4.03881 1.57223 2.10130 3.31485 3.59346 3.60864 3.64453 3.77968 4.32740 4.69388 5.06548 5.15240 5.27535 5.37289 5.44710 5.51098 5.63721 5.70899 5.88672 5.95349 5.96989 6.18004 6.23455 6.27858 6.33936 6.47880 6.62214 6.86482 6.95469 7.04282 7.18897 7.33066 7.40629 7.68391 7.71792 8.02229 8.21750 8.39202 8.76594 9.08045 9.68373 11.14294 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030734 B = 0.007678 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.812157 B = 3646.100426 C = 4100.395863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.165 4.165 5 C -0.016 4.016 6 C -0.133 4.133 7 C -0.096 4.096 8 C -0.132 4.132 9 C 0.242 3.758 10 H 0.053 0.947 11 N -0.842 5.842 12 C -0.508 4.508 13 H 0.070 0.930 14 C 0.080 3.920 15 N -0.901 5.901 16 Si 0.933 3.067 17 H -0.281 1.281 18 H -0.273 1.273 19 H -0.320 1.320 20 C 0.010 3.990 21 N -0.600 5.600 22 H 0.406 0.594 23 C 0.101 3.899 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.332 0.668 33 H 0.310 0.690 34 H 0.262 0.738 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 5.519 -7.769 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.185 4.185 5 C -0.016 4.016 6 C -0.190 4.190 7 C -0.102 4.102 8 C -0.141 4.141 9 C 0.133 3.867 10 H 0.070 0.930 11 N -0.371 5.371 12 C -0.546 4.546 13 H 0.088 0.912 14 C -0.123 4.123 15 N -0.538 5.538 16 Si 0.765 3.235 17 H -0.208 1.208 18 H -0.199 1.199 19 H -0.249 1.249 20 C -0.114 4.114 21 N -0.203 5.203 22 H 0.242 0.758 23 C -0.007 4.007 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.101 5.387 -7.491 14.435 hybrid contribution -1.013 -0.388 -0.622 1.250 sum -12.114 4.999 -8.112 15.413 Atomic orbital electron populations 1.20592 0.92065 1.01786 1.01524 1.18681 0.94686 0.90411 1.08595 1.20526 0.94032 0.95864 1.01467 1.20411 0.93680 0.97252 1.07126 1.19174 0.96088 0.90960 0.95419 1.21094 0.91102 1.04857 1.01919 1.19023 0.91243 0.93453 1.06457 1.21771 0.97451 0.90417 1.04443 1.18232 0.86089 0.85813 0.96585 0.92981 1.59392 1.61249 1.11601 1.04835 1.20765 0.98741 1.45040 0.90088 0.91212 1.25031 0.97945 0.93519 0.95828 1.69969 1.17490 1.46624 1.19716 0.85921 0.75884 0.79614 0.82072 1.20768 1.19851 1.24949 1.21333 0.85192 0.95790 1.09040 1.41538 1.07909 1.03942 1.66910 0.75847 1.18053 0.93842 0.84522 1.04264 0.91961 0.91769 0.92948 0.86604 0.86644 0.91992 0.92351 0.87598 0.85523 0.87868 0.92832 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.02 36.00 0.36 -0.80 16 2 C -0.12 -1.85 5.89 -104.47 -0.62 -2.47 16 3 C -0.10 -1.49 9.67 -39.54 -0.38 -1.87 16 4 C -0.17 -2.71 9.62 -39.95 -0.38 -3.09 16 5 C -0.02 -0.30 5.87 -104.69 -0.61 -0.92 16 6 C -0.13 -2.51 9.19 36.01 0.33 -2.18 16 7 C -0.10 -1.94 6.14 -105.14 -0.65 -2.59 16 8 C -0.13 -2.73 5.36 -102.71 -0.55 -3.28 16 9 C 0.24 5.54 1.71 -70.01 -0.12 5.42 16 10 H 0.05 1.25 5.66 -51.93 -0.29 0.96 16 11 N -0.84 -17.24 6.52 -6.65 -0.04 -17.29 16 12 C -0.51 -13.99 8.14 -34.44 -0.28 -14.27 16 13 H 0.07 2.16 7.98 -52.49 -0.42 1.74 16 14 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 16 Si 0.93 23.65 26.03 -169.99 -4.43 19.23 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 19 H -0.32 -8.23 7.11 56.52 0.40 -7.83 16 20 C 0.01 0.17 11.10 -16.73 -0.19 -0.02 16 21 N -0.60 -9.29 6.07 -10.65 -0.06 -9.36 16 22 H 0.41 4.79 8.87 -40.82 -0.36 4.43 16 23 C 0.10 1.78 6.95 -83.99 -0.58 1.20 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.05 0.54 7.99 -51.93 -0.42 0.12 16 27 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 28 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.11 2.36 4.96 -51.93 -0.26 2.11 16 32 H 0.33 6.40 7.96 -39.29 -0.31 6.09 16 33 H 0.31 5.48 9.06 -39.29 -0.36 5.13 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.16 2.35 7.31 -52.48 -0.38 1.97 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -32.19 285.14 -7.73 -39.91 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -4.50 Total: 12.67 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.77 Total: -22.66 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.67 Total: -53.44 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.43 Total: 19.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.19 -7.73 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.910 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds