Wall clock time and date at job start Mon Mar 30 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37792 * 120.11194 * 2 1 4 4 C 1.38783 * 120.66507 * 180.02562 * 3 2 1 5 5 C 1.36667 * 120.53229 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.11864 * 180.02562 * 5 4 3 7 7 C 1.39592 * 119.76147 * 0.02562 * 5 4 3 8 8 C 1.46492 * 134.03717 * 179.97438 * 7 5 4 9 9 C 1.50706 * 126.50009 * 359.97438 * 8 7 5 10 10 H 1.08999 * 109.46694 * 39.92737 * 9 8 7 11 11 N 1.46898 * 109.46960 * 159.92201 * 9 8 7 12 12 C 1.50694 * 109.47217 * 279.92340 * 9 8 7 13 13 H 1.08010 * 120.00096 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00187 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99941 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 120.00227 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47286 * 59.99847 * 16 14 12 18 18 H 1.48508 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47003 * 299.99638 * 16 14 12 20 20 C 1.34236 * 106.99729 * 180.02562 * 8 7 5 21 21 N 1.36828 * 109.94047 * 359.97438 * 20 8 7 22 22 H 0.96996 * 125.06197 * 179.97438 * 21 20 8 23 23 C 1.37692 * 109.87556 * 0.23086 * 21 20 8 24 24 H 1.08996 * 109.47297 * 90.00142 * 1 2 3 25 25 H 1.09001 * 109.46722 * 209.99920 * 1 2 3 26 26 H 1.08997 * 109.46592 * 329.99345 * 1 2 3 27 27 H 1.08000 * 119.66513 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.73781 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47375 * 264.11466 * 6 5 4 30 30 H 1.08997 * 109.47108 * 24.12120 * 6 5 4 31 31 H 1.08997 * 109.47132 * 144.11907 * 6 5 4 32 32 H 1.00895 * 111.00110 * 296.05177 * 11 9 8 33 33 H 1.00907 * 110.99706 * 60.00198 * 11 9 8 34 34 H 0.96994 * 120.00267 * 180.02562 * 15 14 12 35 35 H 1.08005 * 125.02349 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1920 0.0000 4 6 3.5861 1.2054 -0.0005 5 6 4.2917 0.0350 -0.0005 6 6 5.7985 0.0604 -0.0005 7 6 3.6117 -1.1841 -0.0006 8 6 4.0353 -2.5865 -0.0010 9 6 5.4543 -3.0942 -0.0022 10 1 6.0624 -2.4747 0.6569 11 7 5.4774 -4.4840 0.4731 12 6 6.0086 -3.0328 -1.4022 13 1 5.3949 -2.6627 -2.2103 14 6 7.2991 -3.4492 -1.6516 15 7 8.0465 -3.8994 -0.6676 16 14 7.9865 -3.3724 -3.3868 17 1 7.9638 -1.9672 -3.8665 18 1 9.3847 -3.8729 -3.3880 19 1 7.1577 -4.2156 -4.2852 20 6 2.9199 -3.3333 -0.0013 21 7 1.8165 -2.5242 -0.0005 22 1 0.8977 -2.8350 -0.0009 23 6 2.2048 -1.2032 -0.0049 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 1.6547 2.1252 -0.0004 28 1 4.1127 2.1483 -0.0009 29 1 6.1636 -0.0388 -1.0228 30 1 6.1459 1.0043 0.4194 31 1 6.1758 -0.7660 0.6017 32 1 5.1708 -4.5432 1.4325 33 1 4.9203 -5.0789 -0.1219 34 1 8.9545 -4.1919 -0.8429 35 1 2.8970 -4.4132 -0.0021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:11 Heat of formation + Delta-G solvation = 29.471555 kcal Electronic energy + Delta-G solvation = -17511.741111 eV Core-core repulsion = 14894.650703 eV Total energy + Delta-G solvation = -2617.090407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13479 -38.14453 -36.59907 -34.60018 -33.36703 -30.61577 -30.21079 -29.14026 -27.85563 -25.52498 -24.08843 -22.70961 -22.37106 -19.51702 -18.38107 -18.11881 -16.97008 -16.49151 -16.06541 -15.79989 -15.48746 -15.27286 -14.56733 -14.21209 -14.10062 -13.96774 -13.81578 -13.47016 -13.26528 -13.02147 -12.73514 -12.66913 -12.48915 -12.07734 -11.84386 -11.70082 -11.61495 -11.20481 -10.47534 -9.95454 -9.00575 -8.85694 -8.22357 -7.85699 -6.07653 0.31239 0.83504 1.43361 1.43871 1.51001 1.95449 2.39204 2.52762 3.04043 3.33066 3.93130 4.07181 4.15296 4.33898 4.39509 4.44268 4.55178 4.75661 4.80412 4.83358 4.90715 4.94399 5.02071 5.07796 5.20926 5.31328 5.49436 5.63196 5.73244 5.82766 5.87951 6.01204 6.05500 6.35381 6.40964 6.76637 6.91488 7.21315 7.36968 7.62861 9.13140 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.007584 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.852232 B = 3691.211657 C = 4130.073779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.162 4.162 5 C -0.054 4.054 6 C -0.103 4.103 7 C -0.133 4.133 8 C -0.184 4.184 9 C 0.294 3.706 10 H 0.014 0.986 11 N -0.821 5.821 12 C -0.520 4.520 13 H 0.032 0.968 14 C 0.040 3.960 15 N -0.880 5.880 16 Si 0.934 3.066 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.277 1.277 20 C 0.021 3.979 21 N -0.584 5.584 22 H 0.425 0.575 23 C 0.085 3.915 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.137 0.863 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.310 0.690 33 H 0.322 0.678 34 H 0.253 0.747 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 7.078 2.189 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.181 4.181 5 C -0.055 4.055 6 C -0.159 4.159 7 C -0.138 4.138 8 C -0.193 4.193 9 C 0.184 3.816 10 H 0.031 0.969 11 N -0.348 5.348 12 C -0.559 4.559 13 H 0.050 0.950 14 C -0.163 4.163 15 N -0.516 5.516 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.104 4.104 21 N -0.189 5.189 22 H 0.264 0.736 23 C -0.023 4.023 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.802 6.919 2.116 15.583 hybrid contribution -0.471 -0.352 -0.868 1.049 sum -14.273 6.567 1.248 15.760 Atomic orbital electron populations 1.20663 0.88883 1.03472 1.02651 1.19210 0.96987 0.89454 1.06461 1.20982 0.93523 0.97370 1.00292 1.20730 0.94747 0.96994 1.05647 1.19375 0.95942 0.92042 0.98125 1.20705 0.91685 1.01798 1.01738 1.19383 0.92995 0.93675 1.07788 1.22118 0.97962 0.91785 1.07424 1.17224 0.84867 0.85444 0.94114 0.96858 1.59012 1.61845 1.10021 1.03900 1.20929 0.97620 1.43773 0.93619 0.94977 1.25529 0.97241 0.94588 0.98971 1.70200 1.07913 1.41541 1.31989 0.86031 0.77466 0.78152 0.82305 1.20293 1.20954 1.20229 1.21560 0.85021 0.96626 1.07158 1.41441 1.08390 1.03147 1.65897 0.73611 1.18366 0.93154 0.85902 1.04856 0.90879 0.91939 0.89566 0.82863 0.84469 0.92753 0.90496 0.93109 0.87867 0.86604 0.93767 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.02 71.24 0.71 -1.16 16 2 C -0.12 -3.33 5.89 -19.77 -0.12 -3.45 16 3 C -0.10 -2.79 9.67 22.29 0.22 -2.57 16 4 C -0.16 -5.14 9.60 22.03 0.21 -4.93 16 5 C -0.05 -2.15 5.87 -19.91 -0.12 -2.27 16 6 C -0.10 -4.20 9.55 71.24 0.68 -3.52 16 7 C -0.13 -5.59 6.15 -20.20 -0.12 -5.71 16 8 C -0.18 -8.10 5.39 -18.62 -0.10 -8.20 16 9 C 0.29 14.95 2.40 43.42 0.10 15.06 16 10 H 0.01 0.79 5.86 -2.39 -0.01 0.78 16 11 N -0.82 -38.63 8.23 -174.96 -1.44 -40.07 16 12 C -0.52 -29.24 8.71 25.60 0.22 -29.02 16 13 H 0.03 1.87 7.74 -2.91 -0.02 1.85 16 14 C 0.04 2.25 5.39 84.65 0.46 2.70 16 15 N -0.88 -52.11 12.77 21.45 0.27 -51.84 16 16 Si 0.93 44.92 29.54 68.60 2.03 46.95 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 C 0.02 0.75 11.06 83.00 0.92 1.67 16 21 N -0.58 -17.58 6.07 -187.61 -1.14 -18.71 16 22 H 0.42 9.15 8.87 -92.71 -0.82 8.33 16 23 C 0.09 2.96 6.95 39.03 0.27 3.23 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 26 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.14 3.59 8.05 -2.91 -0.02 3.56 16 29 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.56 8.04 -2.39 -0.02 2.54 16 31 H 0.05 2.36 5.49 -2.39 -0.01 2.35 16 32 H 0.31 13.03 9.06 -89.70 -0.81 12.22 16 33 H 0.32 14.09 8.00 -89.69 -0.72 13.37 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.18 5.39 7.31 -2.91 -0.02 5.37 16 Total: -1.00 -68.32 291.73 1.84 -66.48 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -1.22 Total: 35.36 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 3.34 Total: -38.17 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -2.31 Total: -110.62 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.32 1.84 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.950 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds