Wall clock time and date at job start Mon Mar 30 2020 07:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36828 * 125.06837 * 2 1 4 4 C 1.34238 * 109.93362 * 180.02562 * 3 2 1 5 5 C 1.46485 * 106.99709 * 0.02562 * 4 3 2 6 6 C 1.39622 * 134.02814 * 179.97438 * 5 4 3 7 7 C 1.36634 * 119.76377 * 180.02562 * 6 5 4 8 8 C 1.38830 * 120.52686 * 0.02562 * 7 6 5 9 9 C 1.37753 * 120.66530 * 0.24829 * 8 7 6 10 10 C 1.50701 * 120.10797 * 179.68085 * 9 8 7 11 11 H 1.09001 * 109.46790 * 172.47565 * 10 9 8 12 12 C 1.50693 * 109.47308 * 52.47224 * 10 9 8 13 13 H 1.08002 * 119.99958 * 299.72436 * 12 10 9 14 14 C 1.37875 * 120.00026 * 119.72425 * 12 10 9 15 15 N 1.31515 * 119.99932 * 8.76272 * 14 12 10 16 16 Si 1.86806 * 119.99942 * 188.75996 * 14 12 10 17 17 H 1.48493 * 109.47207 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47038 * 120.00045 * 16 14 12 19 19 H 1.48503 * 109.47079 * 239.99887 * 16 14 12 20 20 C 1.53001 * 109.46743 * 292.46707 * 10 9 8 21 21 N 1.46903 * 109.46575 * 183.13061 * 20 10 9 22 22 C 1.37689 * 125.06045 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47532 * 263.49962 * 1 2 3 24 24 H 1.09007 * 109.46493 * 23.49896 * 1 2 3 25 25 H 1.09001 * 109.47172 * 143.49247 * 1 2 3 26 26 H 1.08010 * 125.03172 * 0.02562 * 3 2 1 27 27 H 1.07997 * 126.50186 * 180.02562 * 4 3 2 28 28 H 1.08001 * 120.12027 * 359.97438 * 6 5 4 29 29 H 1.07996 * 119.73585 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.66813 * 179.97438 * 8 7 6 31 31 H 0.97006 * 119.99688 * 179.97438 * 15 14 12 32 32 H 1.08992 * 109.47572 * 303.12746 * 20 10 9 33 33 H 1.08993 * 109.47021 * 63.13467 * 20 10 9 34 34 H 1.00897 * 111.00169 * 56.05196 * 21 20 10 35 35 H 1.00904 * 110.99754 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7694 -0.0006 5 6 3.5945 -0.6947 -0.0016 6 6 4.6294 -1.6319 -0.0029 7 6 4.3360 -2.9664 -0.0042 8 6 3.0166 -3.3983 -0.0046 9 6 1.9802 -2.4907 -0.0090 10 6 0.5527 -2.9734 -0.0167 11 1 -0.1185 -2.1248 0.1154 12 6 0.3483 -3.9553 1.1081 13 1 0.9276 -4.8662 1.1417 14 6 -0.5783 -3.6908 2.0942 15 7 -1.4027 -2.6742 1.9663 16 14 -0.6626 -4.7766 3.6120 17 1 0.3653 -5.8438 3.5149 18 1 -0.4097 -3.9551 4.8230 19 1 -2.0102 -5.3936 3.7050 20 6 0.2529 -3.6577 -1.3519 21 7 -1.1590 -4.0616 -1.3890 22 6 2.2559 -1.1270 -0.0005 23 1 -0.3634 -0.1163 1.0210 24 1 -0.3632 0.9425 -0.4098 25 1 -0.3633 -0.8260 -0.6114 26 1 1.8835 2.1355 0.0004 27 1 4.3937 1.4397 -0.0003 28 1 5.6582 -1.3033 -0.0038 29 1 5.1368 -3.6909 -0.0056 30 1 2.8004 -4.4564 -0.0060 31 1 -2.0549 -2.4884 2.6600 32 1 0.4540 -2.9646 -2.1686 33 1 0.8858 -4.5386 -1.4588 34 1 -1.7655 -3.2716 -1.2275 35 1 -1.3821 -4.5167 -2.2615 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:46 Heat of formation + Delta-G solvation = 47.810868 kcal Electronic energy + Delta-G solvation = -17817.867653 eV Core-core repulsion = 15201.572498 eV Total energy + Delta-G solvation = -2616.295155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07488 -38.24390 -36.74626 -34.03856 -33.55605 -31.67569 -29.73440 -28.93209 -26.84971 -25.87956 -23.50150 -22.64898 -21.67791 -20.35813 -18.37716 -17.58488 -17.14271 -16.50233 -16.37135 -16.03485 -15.71914 -15.25964 -15.05225 -14.26594 -14.08287 -13.71234 -13.58413 -13.44167 -13.29488 -13.11378 -12.86768 -12.63492 -12.40228 -12.35441 -12.05422 -11.65685 -11.09192 -10.61628 -10.44117 -10.09027 -9.18662 -8.91289 -8.26848 -7.97822 -5.98008 0.49053 0.92922 1.39027 1.42825 1.51649 2.00178 2.18134 2.50166 3.18638 3.34537 3.96765 4.01542 4.12753 4.16267 4.29721 4.48246 4.52136 4.61697 4.68105 4.75653 4.88744 4.97416 4.98696 5.15189 5.22661 5.30602 5.49081 5.64844 5.81525 5.91094 6.03517 6.10515 6.17494 6.41113 6.58521 6.60498 6.67155 6.92150 7.07315 7.60345 9.06606 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.009080 C = 0.008661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.599845 B = 3082.821531 C = 3232.154176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.488 5.488 3 C 0.047 3.953 4 C -0.227 4.227 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.145 4.145 8 C -0.128 4.128 9 C -0.065 4.065 10 C 0.038 3.962 11 H 0.087 0.913 12 C -0.479 4.479 13 H 0.034 0.966 14 C 0.030 3.970 15 N -0.908 5.908 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.092 3.908 21 N -0.834 5.834 22 C 0.060 3.940 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.203 0.797 27 H 0.169 0.831 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.256 0.744 32 H -0.007 1.007 33 H 0.044 0.956 34 H 0.336 0.664 35 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 7.251 -5.835 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.170 5.170 3 C -0.078 4.078 4 C -0.252 4.252 5 C -0.139 4.139 6 C -0.125 4.125 7 C -0.164 4.164 8 C -0.147 4.147 9 C -0.068 4.068 10 C 0.019 3.981 11 H 0.105 0.895 12 C -0.517 4.517 13 H 0.053 0.947 14 C -0.168 4.168 15 N -0.548 5.548 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.039 4.039 21 N -0.363 5.363 22 C -0.045 4.045 23 H 0.075 0.925 24 H 0.127 0.873 25 H 0.089 0.911 26 H 0.220 0.780 27 H 0.186 0.814 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.011 0.989 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.445 6.889 -5.116 10.163 hybrid contribution -0.467 -0.316 0.279 0.629 sum 4.978 6.573 -4.837 9.559 Atomic orbital electron populations 1.22107 0.76537 1.04012 1.03115 1.44042 1.06484 1.04445 1.62066 1.22433 0.90407 0.91920 1.03088 1.21898 0.96902 0.91902 1.14489 1.19693 0.92123 0.95095 1.06962 1.20360 0.98229 0.91830 1.02108 1.20843 0.96011 0.96162 1.03408 1.20720 0.92421 0.98635 1.02954 1.19830 0.98503 0.89437 0.99031 1.18463 0.89205 0.98063 0.92349 0.89501 1.20920 1.19253 1.04094 1.07437 0.94736 1.25303 0.95228 0.96462 0.99821 1.69903 1.20382 1.30483 1.34072 0.85904 0.77441 0.79435 0.81105 1.20199 1.21524 1.21018 1.21688 0.89467 0.96742 0.95976 1.58340 1.03853 1.34348 1.39729 1.18527 0.90977 0.88609 1.06435 0.92488 0.87269 0.91088 0.78033 0.81366 0.84154 0.84373 0.87323 0.93526 0.98898 0.93728 0.85147 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.90 9.68 127.77 1.24 4.14 16 2 N -0.49 -18.16 3.18 -539.27 -1.71 -19.88 16 3 C 0.05 1.39 11.27 83.00 0.94 2.32 16 4 C -0.23 -6.98 11.08 23.51 0.26 -6.71 16 5 C -0.13 -5.12 6.37 -20.20 -0.13 -5.25 16 6 C -0.11 -3.71 10.05 22.23 0.22 -3.48 16 7 C -0.15 -5.25 9.97 22.04 0.22 -5.03 16 8 C -0.13 -5.47 8.88 22.30 0.20 -5.27 16 9 C -0.06 -3.00 4.79 -19.76 -0.09 -3.09 16 10 C 0.04 1.82 2.16 -12.29 -0.03 1.80 16 11 H 0.09 4.27 2.78 -2.39 -0.01 4.26 16 12 C -0.48 -26.08 7.43 25.60 0.19 -25.89 16 13 H 0.03 1.95 7.34 -2.91 -0.02 1.93 16 14 C 0.03 1.67 5.44 84.65 0.46 2.13 16 15 N -0.91 -49.56 12.64 21.45 0.27 -49.29 16 16 Si 0.93 45.00 29.55 68.60 2.03 47.02 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 20 C 0.09 4.01 6.03 86.30 0.52 4.53 16 21 N -0.83 -33.97 9.29 -186.73 -1.73 -35.70 16 22 C 0.06 2.60 6.75 39.03 0.26 2.86 16 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.11 2.74 8.11 -2.38 -0.02 2.72 16 25 H 0.07 2.75 5.80 -2.39 -0.01 2.73 16 26 H 0.20 3.93 8.06 -2.91 -0.02 3.90 16 27 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.11 4.70 7.47 -2.91 -0.02 4.68 16 31 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.04 1.97 8.00 -2.39 -0.02 1.95 16 34 H 0.34 13.75 8.99 -89.70 -0.81 12.94 16 35 H 0.33 11.18 9.08 -89.69 -0.81 10.37 16 Total: -1.00 -64.06 290.28 2.60 -61.45 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.51 Total: 33.33 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.26 Total: -36.95 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.18 Total: -104.86 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.06 2.60 -61.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.264 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds