Wall clock time and date at job start Mon Mar 30 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36833 * 125.06131 * 2 1 4 4 C 1.34236 * 109.92809 * 179.97438 * 3 2 1 5 5 C 1.46483 * 107.00040 * 359.97438 * 4 3 2 6 6 C 1.39634 * 134.03509 * 180.02562 * 5 4 3 7 7 C 1.36618 * 119.76626 * 179.97438 * 6 5 4 8 8 C 1.38827 * 120.52905 * 359.97438 * 7 6 5 9 9 C 1.37747 * 120.66792 * 0.02562 * 8 7 6 10 10 C 1.50707 * 120.11175 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.46698 * 186.68361 * 10 9 8 12 12 C 1.50701 * 109.46885 * 306.68111 * 10 9 8 13 13 H 1.07998 * 119.99788 * 35.16127 * 12 10 9 14 14 C 1.37876 * 119.99642 * 215.16340 * 12 10 9 15 15 N 1.31518 * 119.99873 * 174.74044 * 14 12 10 16 16 Si 1.86793 * 120.00099 * 354.46016 * 14 12 10 17 17 H 1.48501 * 109.47050 * 94.65290 * 16 14 12 18 18 H 1.48499 * 109.47284 * 214.64874 * 16 14 12 19 19 H 1.48497 * 109.47603 * 334.65230 * 16 14 12 20 20 C 1.52997 * 109.47048 * 66.68200 * 10 9 8 21 21 N 1.46894 * 109.47396 * 63.87242 * 20 10 9 22 22 C 1.37694 * 125.06460 * 180.26767 * 2 1 3 23 23 H 1.08998 * 109.47136 * 97.54995 * 1 2 3 24 24 H 1.09005 * 109.47034 * 217.54509 * 1 2 3 25 25 H 1.08995 * 109.46994 * 337.54688 * 1 2 3 26 26 H 1.07995 * 125.03406 * 0.02562 * 3 2 1 27 27 H 1.08002 * 126.50134 * 179.97438 * 4 3 2 28 28 H 1.08004 * 120.11239 * 359.97438 * 6 5 4 29 29 H 1.08005 * 119.73649 * 180.02562 * 7 6 5 30 30 H 1.08008 * 119.66897 * 180.02562 * 8 7 6 31 31 H 0.96996 * 120.00130 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.46774 * 183.87701 * 20 10 9 33 33 H 1.09002 * 109.47206 * 303.86880 * 20 10 9 34 34 H 1.00900 * 111.00063 * 56.04602 * 21 20 10 35 35 H 1.00897 * 111.00067 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5468 0.7696 0.0006 5 6 3.5946 -0.6945 0.0016 6 6 4.6295 -1.6318 0.0029 7 6 4.3361 -2.9661 0.0042 8 6 3.0167 -3.3981 0.0046 9 6 1.9804 -2.4907 0.0033 10 6 0.5527 -2.9734 0.0032 11 1 -0.1183 -2.1230 -0.1175 12 6 0.3493 -3.9395 -1.1354 13 1 1.1464 -4.6080 -1.4253 14 6 -0.8545 -3.9698 -1.8069 15 7 -0.9982 -4.7378 -2.8648 16 14 -2.2838 -2.9261 -1.2095 17 1 -2.2997 -1.6385 -1.9492 18 1 -3.5586 -3.6495 -1.4477 19 1 -2.1295 -2.6603 0.2434 20 6 0.2520 -3.6764 1.3285 21 7 0.3602 -2.7111 2.4304 22 6 2.2560 -1.1270 -0.0053 23 1 -0.3633 -0.1350 -1.0187 24 1 -0.3633 -0.8149 0.6263 25 1 -0.3633 0.9497 0.3925 26 1 1.8834 2.1355 0.0004 27 1 4.3937 1.4399 0.0003 28 1 5.6583 -1.3031 0.0030 29 1 5.1370 -3.6908 0.0056 30 1 2.8006 -4.4563 0.0060 31 1 -1.8452 -4.7594 -3.3371 32 1 -0.7579 -4.0856 1.3016 33 1 0.9674 -4.4844 1.4817 34 1 -0.2472 -1.9197 2.2788 35 1 0.1655 -3.1513 3.3172 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:01 Heat of formation + Delta-G solvation = 66.384791 kcal Electronic energy + Delta-G solvation = -17949.835751 eV Core-core repulsion = 15334.346022 eV Total energy + Delta-G solvation = -2615.489729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.73438 -36.85058 -35.35679 -32.47655 -32.10703 -30.33302 -28.42671 -27.86107 -25.54801 -23.74362 -22.21859 -21.28916 -20.17132 -18.84731 -17.05126 -16.21555 -15.83031 -15.19325 -14.88238 -14.64512 -14.16876 -13.74878 -13.47765 -13.05208 -12.84203 -12.44489 -12.33783 -12.18947 -11.90138 -11.72210 -11.21218 -11.02455 -10.95367 -10.55567 -10.30787 -9.96254 -9.67153 -9.10987 -8.72169 -8.63969 -8.03796 -7.45198 -6.78969 -6.19202 -4.17421 1.93854 2.44316 3.08945 3.14313 3.21044 3.32696 3.39818 4.25258 4.73575 5.03941 5.12010 5.21063 5.30243 5.44456 5.54840 5.68295 5.83322 5.86659 6.03326 6.07336 6.26030 6.35656 6.36897 6.57218 6.59269 6.74074 6.90031 7.05863 7.35078 7.41365 7.47391 7.49341 7.65391 7.79176 7.90677 7.95917 8.02566 8.43838 8.89235 9.41912 10.93967 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.010040 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.598904 B = 2788.113861 C = 3152.776702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.480 5.480 3 C 0.040 3.960 4 C -0.215 4.215 5 C -0.112 4.112 6 C -0.107 4.107 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.010 4.010 10 C 0.037 3.963 11 H 0.044 0.956 12 C -0.504 4.504 13 H 0.081 0.919 14 C 0.072 3.928 15 N -0.893 5.893 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.067 3.933 21 N -0.850 5.850 22 C 0.103 3.897 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.137 0.863 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.264 0.736 32 H 0.020 0.980 33 H 0.067 0.933 34 H 0.323 0.677 35 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 9.081 7.572 12.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.163 5.163 3 C -0.086 4.086 4 C -0.241 4.241 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.157 4.157 8 C -0.125 4.125 9 C -0.012 4.012 10 C 0.018 3.982 11 H 0.062 0.938 12 C -0.542 4.542 13 H 0.099 0.901 14 C -0.130 4.130 15 N -0.530 5.530 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.064 4.064 21 N -0.378 5.378 22 C -0.002 4.002 23 H 0.085 0.915 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.566 9.085 7.188 12.121 hybrid contribution -2.017 0.315 0.257 2.057 sum 1.549 9.399 7.444 12.090 Atomic orbital electron populations 1.22227 0.78377 1.03308 1.03301 1.43615 1.05247 1.04492 1.62945 1.21606 0.90684 0.90731 1.05579 1.21491 0.95411 0.93144 1.14081 1.19089 0.92388 0.93015 1.07170 1.19939 0.96836 0.92188 1.03625 1.20524 0.96348 0.95060 1.03794 1.20576 0.91208 0.99166 1.01503 1.19071 0.97148 0.88159 0.96868 1.18551 0.89799 0.96459 0.93359 0.93775 1.20997 1.00523 1.19482 1.13229 0.90099 1.25052 0.98242 0.95288 0.94421 1.69889 1.25492 1.39446 1.18208 0.87047 0.82959 0.81027 0.79466 1.20218 1.21176 1.19140 1.22329 0.98592 0.94536 0.90893 1.58972 1.61738 1.12087 1.05016 1.18137 0.89333 0.87980 1.04764 0.91457 0.89418 0.90599 0.82478 0.84541 0.87425 0.87226 0.86210 0.92547 0.96160 0.91487 0.86518 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.63 59.85 0.58 1.70 16 2 N -0.48 -8.72 3.18 -121.80 -0.39 -9.11 16 3 C 0.04 0.62 11.27 -16.73 -0.19 0.43 16 4 C -0.22 -3.53 11.08 -37.67 -0.42 -3.95 16 5 C -0.11 -2.20 6.37 -105.14 -0.67 -2.87 16 6 C -0.11 -1.96 10.05 -39.65 -0.40 -2.36 16 7 C -0.14 -2.58 9.97 -39.95 -0.40 -2.98 16 8 C -0.10 -2.22 8.57 -39.54 -0.34 -2.55 16 9 C -0.01 -0.22 4.49 -104.47 -0.47 -0.69 16 10 C 0.04 0.85 1.41 -92.92 -0.13 0.72 16 11 H 0.04 0.98 1.45 -51.93 -0.08 0.90 16 12 C -0.50 -13.60 8.54 -34.44 -0.29 -13.90 16 13 H 0.08 2.38 7.20 -52.49 -0.38 2.01 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 16 Si 0.87 20.20 26.55 -169.99 -4.51 15.68 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -5.71 6.16 56.52 0.35 -5.37 16 20 C 0.07 1.37 5.81 -3.83 -0.02 1.34 16 21 N -0.85 -14.80 9.31 -10.37 -0.10 -14.90 16 22 C 0.10 2.15 6.75 -83.99 -0.57 1.58 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.09 1.50 4.36 -51.93 -0.23 1.27 16 25 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.12 2.52 7.37 -52.48 -0.39 2.13 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.02 0.43 7.22 -51.93 -0.37 0.05 16 33 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 34 H 0.32 5.36 7.46 -39.29 -0.29 5.07 16 35 H 0.33 4.82 9.08 -39.29 -0.36 4.46 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -30.95 281.38 -7.61 -38.56 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.21 Total: 12.88 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -3.42 Total: -21.62 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.29 Total: -49.74 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.51 Total: 15.68 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.95 -7.61 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.949 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds