Wall clock time and date at job start Mon Mar 30 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 126.50375 * 2 1 4 4 N 1.36822 * 109.93290 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.06745 * 180.02562 * 4 3 2 6 6 C 1.37696 * 109.87653 * 0.02562 * 4 3 2 7 7 C 1.39119 * 133.51036 * 179.97438 * 6 4 3 8 8 C 1.37752 * 119.77683 * 179.74832 * 7 6 4 9 9 C 1.38833 * 120.66557 * 0.55094 * 8 7 6 10 10 C 1.50700 * 119.73608 * 179.72108 * 9 8 7 11 11 H 1.09004 * 109.47406 * 159.72978 * 10 9 8 12 12 N 1.46895 * 109.47433 * 39.72498 * 10 9 8 13 13 C 1.50706 * 109.47064 * 279.72675 * 10 9 8 14 14 H 1.07998 * 119.99501 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00481 * 179.97438 * 15 13 10 17 17 Si 1.86803 * 119.99886 * 359.72901 * 15 13 10 18 18 H 1.48502 * 109.46964 * 270.27509 * 17 15 13 19 19 H 1.48505 * 109.47036 * 30.26897 * 17 15 13 20 20 H 1.48490 * 109.47395 * 150.27411 * 17 15 13 21 21 C 1.36628 * 120.52958 * 359.44188 * 9 8 7 22 22 C 1.39632 * 119.75886 * 0.27574 * 21 9 8 23 23 H 1.08991 * 109.47150 * 269.95477 * 1 2 3 24 24 H 1.08997 * 109.47004 * 29.95449 * 1 2 3 25 25 H 1.09005 * 109.46904 * 149.95401 * 1 2 3 26 26 H 1.08000 * 125.03058 * 0.02562 * 3 2 1 27 27 H 1.08997 * 109.46800 * 89.97225 * 5 4 3 28 28 H 1.08996 * 109.47404 * 209.97893 * 5 4 3 29 29 H 1.09004 * 109.46530 * 329.98361 * 5 4 3 30 30 H 1.07993 * 120.11301 * 0.02562 * 7 6 4 31 31 H 1.08001 * 119.67139 * 180.26926 * 8 7 6 32 32 H 1.00907 * 111.00270 * 300.00635 * 12 10 9 33 33 H 1.00898 * 111.00106 * 63.95734 * 12 10 9 34 34 H 0.96999 * 120.00235 * 179.72806 * 16 15 13 35 35 H 1.07994 * 120.11839 * 180.29498 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0791 0.0000 4 7 3.6170 0.6889 -0.0006 5 6 4.7657 1.5981 -0.0002 6 6 3.6964 -0.6858 -0.0015 7 6 4.7589 -1.5839 -0.0029 8 6 4.5096 -2.9386 0.0016 9 6 3.2070 -3.4189 -0.0040 10 6 2.9584 -4.9052 -0.0052 11 1 1.9461 -5.1047 0.3465 12 7 3.9244 -5.5641 0.8839 13 6 3.1182 -5.4401 -1.4051 14 1 3.3738 -4.7705 -2.2130 15 6 2.9381 -6.7841 -1.6544 16 7 3.0771 -7.2508 -2.8761 17 14 2.5034 -7.9434 -0.2556 18 1 3.7498 -8.4716 0.3550 19 1 1.7219 -7.2088 0.7714 20 1 1.6932 -9.0714 -0.7812 21 6 2.1487 -2.5548 -0.0026 22 6 2.3784 -1.1775 -0.0014 23 1 -0.3633 -0.0008 1.0276 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3633 -0.8896 -0.5146 26 1 1.9635 2.1035 0.0004 27 1 5.0505 1.8232 1.0275 28 1 5.6030 1.1260 -0.5142 29 1 4.4981 2.5216 -0.5136 30 1 5.7758 -1.2201 -0.0029 31 1 5.3357 -3.6343 0.0050 32 1 4.8711 -5.3942 0.5788 33 1 3.7944 -5.2701 1.8403 34 1 2.9543 -8.1970 -3.0507 35 1 1.1381 -2.9357 -0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:31 Heat of formation + Delta-G solvation = 58.112454 kcal Electronic energy + Delta-G solvation = -17089.901802 eV Core-core repulsion = 14474.053357 eV Total energy + Delta-G solvation = -2615.848445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98285 -37.43780 -34.06184 -33.50721 -31.68846 -29.77602 -29.27593 -27.73188 -26.21684 -24.61123 -22.25120 -21.99670 -19.71426 -18.94859 -16.81925 -16.47104 -15.91915 -15.22003 -14.95701 -14.59229 -13.81129 -13.66153 -13.63556 -13.23198 -12.93563 -12.71116 -12.37187 -12.27146 -12.19669 -11.74116 -11.61736 -11.33615 -11.00599 -10.59137 -10.32303 -10.03489 -9.68681 -9.21723 -8.98501 -8.46951 -7.70964 -7.49357 -7.07209 -5.94138 -4.03656 1.59444 2.19901 2.95438 3.02978 3.62256 3.66099 3.79908 4.45755 4.71308 4.73889 4.92779 5.10972 5.11187 5.27046 5.33338 5.36172 5.51454 5.67559 5.76651 5.87481 5.98700 6.06684 6.10314 6.17811 6.30533 6.38908 6.59752 6.91249 7.00796 7.16971 7.20635 7.43325 7.58179 7.68018 7.74100 8.22669 8.39476 8.76725 9.07450 9.69411 11.15421 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.006133 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.553004 B = 4564.198419 C = 4918.153057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.174 4.174 3 C 0.034 3.966 4 N -0.494 5.494 5 C 0.084 3.916 6 C 0.083 3.917 7 C -0.139 4.139 8 C -0.085 4.085 9 C -0.092 4.092 10 C 0.218 3.782 11 H 0.048 0.952 12 N -0.841 5.841 13 C -0.514 4.514 14 H 0.071 0.929 15 C 0.080 3.920 16 N -0.902 5.902 17 Si 0.938 3.062 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.320 1.320 21 C -0.074 4.074 22 C -0.102 4.102 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.160 0.840 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.333 0.667 33 H 0.311 0.689 34 H 0.263 0.737 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 17.136 7.891 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.181 4.181 3 C -0.090 4.090 4 N -0.179 5.179 5 C -0.058 4.058 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.105 4.105 9 C -0.095 4.095 10 C 0.109 3.891 11 H 0.066 0.934 12 N -0.370 5.370 13 C -0.552 4.552 14 H 0.089 0.911 15 C -0.124 4.124 16 N -0.539 5.539 17 Si 0.770 3.230 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.250 1.250 21 C -0.093 4.093 22 C -0.106 4.106 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.177 0.823 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.576 16.541 7.546 18.190 hybrid contribution 0.374 0.510 0.663 0.916 sum 0.950 17.051 8.209 18.948 Atomic orbital electron populations 1.20061 0.89878 1.02014 1.01244 1.20268 0.95010 0.91129 1.11737 1.21381 0.82061 0.98606 1.06941 1.43593 1.05488 1.04149 1.64658 1.21806 0.88189 0.93474 1.02305 1.18171 0.95675 0.82335 1.05949 1.19874 0.95772 0.92257 1.08032 1.20679 0.97134 0.93461 0.99196 1.20661 0.92210 0.99029 0.97593 1.18658 0.92861 0.83528 0.94041 0.93395 1.59383 1.08617 1.64447 1.04573 1.20795 1.49527 0.94027 0.90842 0.91126 1.25037 0.93178 0.98427 0.95743 1.69967 1.49232 1.14364 1.20369 0.85846 0.77921 0.77975 0.81247 1.20726 1.19969 1.25000 1.20143 0.99105 0.90081 0.99977 1.19093 0.91650 0.93187 1.06686 0.92281 0.92415 0.91654 0.82309 0.91935 0.90435 0.90479 0.87266 0.86066 0.85276 0.87818 0.92816 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.41 36.01 0.37 -0.55 16 2 C -0.17 -2.66 6.32 -102.71 -0.65 -3.31 16 3 C 0.03 0.45 11.20 -16.73 -0.19 0.27 16 4 N -0.49 -6.91 3.18 -121.81 -0.39 -7.30 16 5 C 0.08 0.79 11.03 59.85 0.66 1.45 16 6 C 0.08 1.43 6.81 -83.99 -0.57 0.86 16 7 C -0.14 -2.37 9.96 -39.43 -0.39 -2.76 16 8 C -0.09 -1.62 9.26 -39.54 -0.37 -1.99 16 9 C -0.09 -1.93 4.85 -104.98 -0.51 -2.44 16 10 C 0.22 5.14 2.33 -70.02 -0.16 4.98 16 11 H 0.05 1.18 7.05 -51.93 -0.37 0.81 16 12 N -0.84 -17.83 6.57 -6.65 -0.04 -17.87 16 13 C -0.51 -14.61 9.29 -34.44 -0.32 -14.93 16 14 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 15 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 16 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 17 Si 0.94 24.22 26.02 -169.99 -4.42 19.79 16 18 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.27 -6.88 6.55 56.52 0.37 -6.51 16 20 H -0.32 -8.36 7.11 56.52 0.40 -7.96 16 21 C -0.07 -1.48 9.65 -39.64 -0.38 -1.86 16 22 C -0.10 -1.88 6.35 -105.14 -0.67 -2.55 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.12 2.18 6.61 -52.49 -0.35 1.84 16 32 H 0.33 6.72 7.30 -39.29 -0.29 6.43 16 33 H 0.31 5.71 9.06 -39.29 -0.36 5.35 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.12 2.26 8.01 -52.49 -0.42 1.84 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -33.62 292.66 -7.68 -41.31 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.74 Total: 7.64 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.27 Total: -20.58 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.34 Total: -52.57 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.42 Total: 19.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.62 -7.68 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.419 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds