Wall clock time and date at job start Mon Mar 30 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36664 * 120.11429 * 2 1 4 4 C 1.38789 * 120.52541 * 180.02562 * 3 2 1 5 5 C 1.37792 * 120.66805 * 359.97438 * 4 3 2 6 6 C 1.39080 * 119.77890 * 359.97438 * 5 4 3 7 7 N 1.37691 * 133.51789 * 180.02562 * 6 5 4 8 8 H 0.97001 * 125.06000 * 0.02562 * 7 6 5 9 9 C 1.36838 * 109.87538 * 179.74277 * 7 6 5 10 10 C 1.34233 * 109.93798 * 0.44208 * 9 7 6 11 11 C 1.50694 * 126.50040 * 179.82840 * 10 9 7 12 12 H 1.09003 * 109.47205 * 174.21818 * 11 10 9 13 13 C 1.50698 * 109.47744 * 294.22201 * 11 10 9 14 14 H 1.08007 * 119.99282 * 24.72511 * 13 11 10 15 15 C 1.37874 * 120.00484 * 204.72819 * 13 11 10 16 16 N 1.31520 * 119.99588 * 357.14377 * 15 13 11 17 17 Si 1.86796 * 120.00009 * 177.14621 * 15 13 11 18 18 H 1.48498 * 109.47104 * 269.99682 * 17 15 13 19 19 H 1.48495 * 109.47417 * 30.00121 * 17 15 13 20 20 H 1.48507 * 109.47149 * 150.00142 * 17 15 13 21 21 C 1.53001 * 109.46920 * 54.22425 * 11 10 9 22 22 N 1.46891 * 109.47509 * 65.65549 * 21 11 10 23 23 C 1.39585 * 120.12098 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46901 * 264.61702 * 1 2 3 25 25 H 1.08996 * 109.47064 * 24.61351 * 1 2 3 26 26 H 1.08996 * 109.46689 * 144.61895 * 1 2 3 27 27 H 1.07995 * 119.73946 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.66774 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.11101 * 179.97438 * 5 4 3 30 30 H 1.08004 * 125.02749 * 180.28434 * 9 7 6 31 31 H 0.96992 * 120.00214 * 354.15733 * 16 15 13 32 32 H 1.09001 * 109.47228 * 185.66046 * 21 11 10 33 33 H 1.09004 * 109.46962 * 305.65300 * 21 11 10 34 34 H 1.00908 * 111.00148 * 56.05006 * 22 21 11 35 35 H 1.00905 * 111.00464 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1921 -0.0005 5 6 4.2919 0.0120 -0.0005 6 6 3.6146 -1.2027 0.0005 7 7 4.0250 -2.5171 0.0013 8 1 4.9490 -2.8123 0.0015 9 6 2.9353 -3.3447 0.0080 10 6 1.8075 -2.6166 0.0021 11 6 0.3974 -3.1482 0.0028 12 1 -0.3034 -2.3191 0.1005 13 6 0.1350 -3.8782 -1.2892 14 1 0.9575 -4.3003 -1.8476 15 6 -1.1550 -4.0070 -1.7586 16 7 -2.1616 -3.5423 -1.0511 17 14 -1.4730 -4.8418 -3.3991 18 1 -1.4442 -3.8282 -4.4840 19 1 -0.4232 -5.8623 -3.6470 20 1 -2.8047 -5.4984 -3.3705 21 6 0.2158 -4.1106 1.1782 22 7 0.3380 -3.3700 2.4409 23 6 2.2075 -1.2074 -0.0005 24 1 -0.3633 -0.0964 1.0231 25 1 -0.3633 0.9343 -0.4280 26 1 -0.3632 -0.8379 -0.5950 27 1 1.6504 2.1161 0.0004 28 1 4.1084 2.1344 -0.0009 29 1 5.3717 0.0303 -0.0014 30 1 2.9765 -4.4239 0.0144 31 1 -2.0062 -3.1857 -0.1626 32 1 -0.7703 -4.5716 1.1214 33 1 0.9818 -4.8849 1.1355 34 1 -0.3194 -2.6053 2.4767 35 1 0.2222 -3.9841 3.2331 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:14 Heat of formation + Delta-G solvation = 23.250936 kcal Electronic energy + Delta-G solvation = -17671.168798 eV Core-core repulsion = 15053.808645 eV Total energy + Delta-G solvation = -2617.360154 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02104 -38.01234 -37.28948 -34.22690 -33.75099 -31.48372 -30.05945 -28.83501 -27.00221 -25.64845 -23.42572 -22.70478 -22.40470 -20.09956 -18.62944 -18.19019 -17.08657 -16.39560 -16.12193 -15.64638 -15.44281 -15.35134 -15.19343 -14.77556 -14.15236 -14.01042 -13.74326 -13.50715 -13.19448 -13.02549 -12.78415 -12.45627 -12.23647 -12.08075 -11.95141 -11.51595 -11.31156 -10.75117 -10.40339 -9.99925 -9.47225 -8.95017 -8.56521 -8.13292 -6.22284 0.36638 0.86918 1.53671 1.60651 1.78159 2.10447 2.45763 2.60716 3.10575 3.27612 3.93241 3.96245 4.12433 4.21218 4.43649 4.48112 4.50973 4.68688 4.74557 4.78320 4.87099 4.89499 5.03722 5.11427 5.23979 5.37957 5.42831 5.65892 5.76586 5.88440 5.99562 6.13668 6.18470 6.33032 6.39900 6.46337 6.67435 6.81187 6.96567 7.53937 8.86394 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.008037 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.359090 B = 3483.185719 C = 3589.425978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.166 4.166 4 C -0.099 4.099 5 C -0.145 4.145 6 C 0.083 3.917 7 N -0.588 5.588 8 H 0.424 0.576 9 C 0.018 3.982 10 C -0.114 4.114 11 C 0.087 3.913 12 H 0.035 0.965 13 C -0.588 4.588 14 H 0.038 0.962 15 C -0.026 4.026 16 N -0.936 5.936 17 Si 1.106 2.894 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.285 1.285 21 C 0.086 3.914 22 N -0.842 5.842 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.137 0.863 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.259 0.741 32 H -0.007 1.007 33 H 0.051 0.949 34 H 0.333 0.667 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.883 5.630 3.513 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.185 4.185 4 C -0.118 4.118 5 C -0.166 4.166 6 C -0.026 4.026 7 N -0.193 5.193 8 H 0.263 0.737 9 C -0.106 4.106 10 C -0.121 4.121 11 C 0.068 3.932 12 H 0.053 0.947 13 C -0.627 4.627 14 H 0.057 0.943 15 C -0.224 4.224 16 N -0.574 5.574 17 Si 0.930 3.070 18 H -0.207 1.207 19 H -0.198 1.198 20 H -0.210 1.210 21 C -0.045 4.045 22 N -0.370 5.370 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.174 0.826 29 H 0.162 0.838 30 H 0.183 0.817 31 H 0.070 0.930 32 H 0.011 0.989 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.565 5.291 2.184 12.016 hybrid contribution 0.223 -0.485 1.290 1.396 sum 10.788 4.806 3.474 12.311 Atomic orbital electron populations 1.20815 0.92050 1.02140 1.01727 1.19325 0.95665 0.92117 0.98210 1.20733 0.95050 0.96757 1.05953 1.21084 0.93477 0.97969 0.99247 1.20284 1.00134 0.88835 1.07344 1.18562 0.93372 0.86290 1.04327 1.41470 1.08401 1.03236 1.66152 0.73685 1.21428 0.85605 0.95949 1.07611 1.20511 0.95524 0.90634 1.05383 1.17515 0.89474 0.93970 0.92271 0.94738 1.22272 0.94514 1.37683 1.08183 0.94326 1.26958 0.92598 0.96255 1.06639 1.70866 1.33847 1.40266 1.12429 0.83054 0.75863 0.76002 0.72070 1.20720 1.19838 1.21039 1.21844 0.96476 0.96310 0.89863 1.58825 1.59736 1.14528 1.03941 1.19411 0.93208 0.93602 1.08072 0.91554 0.90500 0.93516 0.84479 0.82619 0.83808 0.81672 0.93034 0.98863 0.93005 0.85596 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 9.04 71.24 0.64 -3.69 16 2 C -0.05 -2.05 5.87 -19.91 -0.12 -2.17 16 3 C -0.17 -5.18 9.60 22.03 0.21 -4.97 16 4 C -0.10 -2.65 10.01 22.30 0.22 -2.43 16 5 C -0.15 -4.16 10.08 22.37 0.23 -3.93 16 6 C 0.08 2.96 7.28 39.03 0.28 3.25 16 7 N -0.59 -19.11 6.07 -187.60 -1.14 -20.25 16 8 H 0.42 10.06 8.96 -92.71 -0.83 9.23 16 9 C 0.02 0.71 11.08 83.00 0.92 1.63 16 10 C -0.11 -5.16 4.78 -18.63 -0.09 -5.25 16 11 C 0.09 4.33 1.65 -12.29 -0.02 4.31 16 12 H 0.03 1.84 3.71 -2.39 -0.01 1.83 16 13 C -0.59 -32.58 8.24 25.60 0.21 -32.37 16 14 H 0.04 2.16 7.78 -2.91 -0.02 2.14 16 15 C -0.03 -1.47 5.46 84.65 0.46 -1.01 16 16 N -0.94 -55.58 13.58 21.45 0.29 -55.29 16 17 Si 1.11 50.63 29.90 68.60 2.05 52.68 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C 0.09 3.90 5.91 86.31 0.51 4.41 16 22 N -0.84 -32.02 9.36 -186.73 -1.75 -33.77 16 23 C -0.14 -5.85 6.15 -20.20 -0.12 -5.98 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 26 H 0.05 2.22 5.79 -2.39 -0.01 2.21 16 27 H 0.14 3.50 8.05 -2.91 -0.02 3.48 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.17 5.97 7.90 -2.91 -0.02 5.95 16 31 H 0.26 15.40 6.33 -92.71 -0.59 14.81 16 32 H -0.01 -0.34 7.72 -2.39 -0.02 -0.36 16 33 H 0.05 2.29 7.62 -2.38 -0.02 2.27 16 34 H 0.33 12.59 8.99 -89.69 -0.81 11.78 16 35 H 0.34 10.83 9.08 -89.69 -0.81 10.02 16 Total: -1.00 -67.14 289.60 1.67 -65.47 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -1.13 Total: 39.34 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.34 Total: -48.19 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -2.59 Total: -109.30 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -67.14 1.67 -65.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.725 kcal (2) G-P(sol) polarization free energy of solvation -67.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds