Wall clock time and date at job start Mon Mar 30 2020 07:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36828 * 125.05779 * 2 1 4 4 C 1.34236 * 109.92897 * 180.02562 * 3 2 1 5 5 C 1.46488 * 106.99684 * 0.02562 * 4 3 2 6 6 C 1.39632 * 134.02956 * 179.97438 * 5 4 3 7 7 C 1.36625 * 119.76580 * 179.97438 * 6 5 4 8 8 C 1.38837 * 120.52354 * 0.03781 * 7 6 5 9 9 C 1.50699 * 119.66076 * 180.25527 * 8 7 6 10 10 H 1.09000 * 109.46622 * 179.72527 * 9 8 7 11 11 C 1.50698 * 109.47220 * 59.72968 * 9 8 7 12 12 H 1.08000 * 120.00373 * 266.01435 * 11 9 8 13 13 C 1.37885 * 119.99978 * 86.01111 * 11 9 8 14 14 N 1.31515 * 120.00041 * 5.41569 * 13 11 9 15 15 Si 1.86796 * 119.99803 * 185.40923 * 13 11 9 16 16 H 1.48493 * 109.47485 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46752 * 120.00376 * 15 13 11 18 18 H 1.48498 * 109.47253 * 239.99991 * 15 13 11 19 19 C 1.53002 * 109.47436 * 299.72681 * 9 8 7 20 20 N 1.46900 * 109.47010 * 185.45880 * 19 9 8 21 21 C 1.37740 * 120.66591 * 359.97438 * 8 7 6 22 22 C 1.37684 * 125.06591 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47133 * 269.96912 * 1 2 3 24 24 H 1.08994 * 109.47387 * 29.98034 * 1 2 3 25 25 H 1.09006 * 109.47091 * 149.97700 * 1 2 3 26 26 H 1.07996 * 125.04020 * 0.02562 * 3 2 1 27 27 H 1.08006 * 126.50392 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.11612 * 0.05686 * 6 5 4 29 29 H 1.08000 * 119.73606 * 180.02562 * 7 6 5 30 30 H 0.96991 * 120.00111 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.47156 * 305.45604 * 19 9 8 32 32 H 1.08994 * 109.46565 * 65.45665 * 19 9 8 33 33 H 1.00898 * 110.99682 * 174.17416 * 20 19 9 34 34 H 1.00900 * 110.99532 * 298.12216 * 20 19 9 35 35 H 1.08005 * 120.10677 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5468 0.7697 -0.0006 5 6 3.5945 -0.6944 -0.0016 6 6 4.6296 -1.6316 -0.0029 7 6 4.3363 -2.9660 -0.0031 8 6 3.0168 -3.3980 -0.0027 9 6 2.7155 -4.8746 0.0029 10 1 1.6360 -5.0250 0.0073 11 6 3.3156 -5.5050 1.2332 12 1 4.2977 -5.9519 1.1867 13 6 2.6107 -5.5113 2.4182 14 7 1.3744 -5.0638 2.4504 15 14 3.4117 -6.1556 3.9779 16 1 4.7972 -6.5971 3.6769 17 1 3.4471 -5.0769 4.9981 18 1 2.6278 -7.3041 4.4989 19 6 3.3157 -5.5224 -1.2465 20 7 2.9121 -6.9335 -1.3083 21 6 1.9805 -2.4906 -0.0016 22 6 2.2560 -1.1269 -0.0005 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8833 2.1355 0.0004 27 1 4.3936 1.4401 -0.0003 28 1 5.6583 -1.3029 -0.0025 29 1 5.1372 -3.6906 -0.0037 30 1 0.8785 -5.0685 3.2839 31 1 2.9555 -5.0023 -2.1341 32 1 4.4028 -5.4569 -1.2031 33 1 3.2159 -7.3590 -2.1713 34 1 3.2605 -7.4444 -0.5110 35 1 0.9574 -2.8367 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:12 Heat of formation + Delta-G solvation = 54.252090 kcal Electronic energy + Delta-G solvation = -17305.141745 eV Core-core repulsion = 14689.125902 eV Total energy + Delta-G solvation = -2616.015843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -40.57652 -37.09274 -34.48086 -32.33361 -32.09960 -29.66344 -29.40500 -26.38642 -25.75336 -24.22204 -21.67203 -21.28200 -19.87823 -18.98318 -16.76889 -16.12290 -15.27864 -14.86267 -14.83184 -14.73296 -14.18436 -13.54447 -13.15699 -12.95696 -12.78933 -12.57842 -12.27218 -12.03749 -11.63929 -11.37655 -10.99618 -10.94363 -10.64182 -10.52615 -10.36013 -9.85259 -9.35421 -9.15741 -8.77288 -8.42980 -7.70373 -7.23231 -6.83853 -6.01340 -4.04129 2.00361 2.56125 3.29029 3.34668 3.36514 3.39008 3.41218 4.43589 4.85370 5.05693 5.19521 5.27356 5.45080 5.49960 5.65106 5.68151 5.84916 6.10768 6.18541 6.23912 6.38403 6.41373 6.47768 6.68658 6.77836 6.95176 7.07554 7.42300 7.49536 7.53700 7.59409 7.82295 7.89255 8.02127 8.13033 8.21231 8.32120 8.47073 9.01697 9.58386 11.06556 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.007683 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.728140 B = 3643.305015 C = 3978.346259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.494 5.494 3 C 0.027 3.973 4 C -0.206 4.206 5 C -0.136 4.136 6 C -0.091 4.091 7 C -0.127 4.127 8 C 0.001 3.999 9 C 0.069 3.931 10 H 0.068 0.932 11 C -0.504 4.504 12 H 0.053 0.947 13 C 0.071 3.929 14 N -0.878 5.878 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.080 3.920 20 N -0.843 5.843 21 C -0.132 4.132 22 C 0.099 3.901 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.135 0.865 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.010 0.990 33 H 0.317 0.683 34 H 0.347 0.653 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 8.349 -5.574 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.179 5.179 3 C -0.098 4.098 4 C -0.232 4.232 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.146 4.146 8 C -0.001 4.001 9 C 0.050 3.950 10 H 0.086 0.914 11 C -0.542 4.542 12 H 0.071 0.929 13 C -0.133 4.133 14 N -0.515 5.515 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.051 4.051 20 N -0.372 5.372 21 C -0.153 4.153 22 C -0.005 4.005 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.484 8.685 -5.402 10.240 hybrid contribution 1.323 -0.281 1.173 1.790 sum 0.840 8.404 -4.230 9.446 Atomic orbital electron populations 1.21806 0.78116 1.03396 1.02530 1.43703 1.05324 1.04542 1.64294 1.21514 0.90680 0.90610 1.06947 1.21531 0.95403 0.93324 1.12952 1.19017 0.92451 0.92842 1.09630 1.20103 0.96784 0.92415 1.01717 1.20523 0.96909 0.94299 1.02843 1.20382 0.91207 0.97638 0.90914 1.17990 0.99568 0.85613 0.91803 0.91383 1.20913 1.02433 1.36812 0.94025 0.92859 1.24945 0.94547 0.94872 0.98894 1.69938 1.08985 1.46075 1.26473 0.86634 0.79637 0.78477 0.83830 1.19773 1.21107 1.21066 1.21778 0.95905 0.88756 0.98657 1.58623 1.68488 1.03855 1.06253 1.19915 0.99651 0.87996 1.07723 1.18387 0.89763 0.88238 1.04099 0.91855 0.90811 0.90234 0.82635 0.84672 0.87508 0.86866 0.93083 0.93888 0.97160 0.87286 0.83872 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.03 59.85 0.66 1.75 16 2 N -0.49 -8.46 3.18 -121.81 -0.39 -8.85 16 3 C 0.03 0.41 11.29 -16.73 -0.19 0.22 16 4 C -0.21 -3.45 11.08 -37.67 -0.42 -3.86 16 5 C -0.14 -2.74 6.37 -105.14 -0.67 -3.41 16 6 C -0.09 -1.82 10.05 -39.64 -0.40 -2.22 16 7 C -0.13 -2.74 8.78 -39.94 -0.35 -3.09 16 8 C 0.00 0.03 4.78 -104.58 -0.50 -0.47 16 9 C 0.07 1.68 2.16 -92.92 -0.20 1.48 16 10 H 0.07 1.88 7.21 -51.93 -0.37 1.50 16 11 C -0.50 -13.24 7.06 -34.44 -0.24 -13.49 16 12 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 13 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 14 N -0.88 -25.03 12.91 55.43 0.72 -24.31 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 C 0.08 1.67 5.94 -3.82 -0.02 1.64 16 20 N -0.84 -16.41 9.57 -10.37 -0.10 -16.51 16 21 C -0.13 -2.99 9.57 -39.43 -0.38 -3.37 16 22 C 0.10 2.07 6.81 -83.99 -0.57 1.50 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 25 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.11 2.34 7.61 -52.49 -0.40 1.94 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 33 H 0.32 5.07 9.08 -39.29 -0.36 4.71 16 34 H 0.35 6.94 8.25 -39.29 -0.32 6.61 16 35 H 0.11 2.55 7.93 -52.48 -0.42 2.13 16 LS Contribution 297.34 15.07 4.48 4.48 Total: -1.00 -30.58 297.34 -8.46 -39.04 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.77 Total: 11.38 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.38 Total: -21.47 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.23 Total: -49.67 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.58 -8.46 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.293 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds