Wall clock time and date at job start Mon Mar 30 2020 07:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36836 * 125.06100 * 2 1 4 4 C 1.34237 * 109.92930 * 180.02562 * 3 2 1 5 5 C 1.46490 * 106.99768 * 359.97438 * 4 3 2 6 6 C 1.39625 * 134.02527 * 179.97438 * 5 4 3 7 7 C 1.36633 * 119.75950 * 179.73290 * 6 5 4 8 8 C 1.38832 * 120.52794 * 0.54973 * 7 6 5 9 9 C 1.50692 * 119.66876 * 179.74032 * 8 7 6 10 10 H 1.08999 * 109.47453 * 179.72800 * 9 8 7 11 11 C 1.50702 * 109.47014 * 299.72854 * 9 8 7 12 12 H 1.08005 * 120.00195 * 5.57446 * 11 9 8 13 13 C 1.37877 * 120.00214 * 185.57854 * 11 9 8 14 14 N 1.31512 * 120.00421 * 196.26392 * 13 11 9 15 15 Si 1.86806 * 119.99763 * 16.26007 * 13 11 9 16 16 H 1.48503 * 109.47094 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47283 * 60.00356 * 15 13 11 18 18 H 1.48502 * 109.46932 * 300.00046 * 15 13 11 19 19 C 1.52996 * 109.47252 * 59.72492 * 9 8 7 20 20 N 1.46900 * 109.47081 * 65.89298 * 19 9 8 21 21 C 1.37751 * 120.66433 * 359.46541 * 8 7 6 22 22 C 1.37690 * 125.06730 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47321 * 269.97974 * 1 2 3 24 24 H 1.09000 * 109.46876 * 29.98155 * 1 2 3 25 25 H 1.09001 * 109.46862 * 149.98004 * 1 2 3 26 26 H 1.08000 * 125.03104 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.49925 * 179.97438 * 4 3 2 28 28 H 1.07996 * 120.12204 * 0.02562 * 6 5 4 29 29 H 1.08003 * 119.73479 * 180.28983 * 7 6 5 30 30 H 0.97005 * 119.99850 * 354.31949 * 14 13 11 31 31 H 1.08999 * 109.47532 * 185.89907 * 19 9 8 32 32 H 1.09002 * 109.46856 * 305.89885 * 19 9 8 33 33 H 1.00908 * 110.99273 * 56.04937 * 20 19 9 34 34 H 1.00900 * 111.00310 * 179.97438 * 20 19 9 35 35 H 1.07997 * 120.11028 * 180.23355 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 3.5946 -0.6945 -0.0003 6 6 4.6296 -1.6316 -0.0011 7 6 4.3362 -2.9661 0.0049 8 6 3.0168 -3.3981 0.0004 9 6 2.7154 -4.8746 0.0013 10 1 1.6358 -5.0250 0.0022 11 6 3.3100 -5.5094 -1.2294 12 1 3.9277 -4.9238 -1.8943 13 6 3.0656 -6.8377 -1.5065 14 7 3.8177 -7.4774 -2.3752 15 14 1.6662 -7.7288 -0.6479 16 1 1.6147 -9.1370 -1.1164 17 1 0.3818 -7.0542 -0.9643 18 1 1.8902 -7.7038 0.8199 19 6 3.3210 -5.5180 1.2503 20 7 2.6418 -5.0009 2.4458 21 6 1.9804 -2.4906 0.0008 22 6 2.2561 -1.1270 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8833 2.1355 -0.0004 27 1 4.3936 1.4400 -0.0011 28 1 5.6583 -1.3030 -0.0017 29 1 5.1371 -3.6906 0.0091 30 1 4.4905 -6.9959 -2.8816 31 1 3.1945 -6.5994 1.1997 32 1 4.3831 -5.2785 1.3037 33 1 1.6459 -5.1533 2.3902 34 1 3.0238 -5.4113 3.2847 35 1 0.9574 -2.8366 0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:19 Heat of formation + Delta-G solvation = 56.776727 kcal Electronic energy + Delta-G solvation = -17281.508369 eV Core-core repulsion = 14665.602003 eV Total energy + Delta-G solvation = -2615.906366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75250 -37.36881 -34.67850 -32.40913 -32.36482 -29.92895 -29.64205 -26.84422 -25.92353 -23.21021 -22.01037 -21.62743 -20.03269 -18.91086 -17.55883 -16.51683 -15.65840 -15.15253 -15.00429 -14.66055 -14.01767 -13.71775 -13.40896 -13.11608 -12.84609 -12.73062 -12.53110 -12.19301 -12.18957 -11.41805 -11.18899 -10.92581 -10.54711 -10.36168 -10.22450 -9.99616 -9.77573 -9.11558 -8.91414 -8.29185 -7.86796 -7.40562 -7.04725 -6.45544 -4.10613 1.82646 2.39271 3.18338 3.18603 3.28609 3.36293 3.53669 4.42513 4.68081 4.89863 5.06844 5.16854 5.27373 5.29488 5.46823 5.48104 5.65377 5.90966 5.98012 6.05685 6.20059 6.25588 6.47664 6.48920 6.62644 6.75434 6.90267 7.13514 7.27404 7.31627 7.37448 7.71012 7.72382 7.74245 7.93461 8.04710 8.18168 8.36887 8.89359 9.57837 10.90865 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.006770 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.825391 B = 4135.185980 C = 4299.790886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.495 5.495 3 C 0.029 3.971 4 C -0.203 4.203 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.123 4.123 8 C 0.021 3.979 9 C 0.056 3.944 10 H 0.024 0.976 11 C -0.590 4.590 12 H 0.062 0.938 13 C 0.030 3.970 14 N -0.905 5.905 15 Si 1.048 2.952 16 H -0.286 1.286 17 H -0.284 1.284 18 H -0.278 1.278 19 C 0.057 3.943 20 N -0.852 5.852 21 C -0.146 4.146 22 C 0.102 3.898 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.158 0.842 27 H 0.138 0.862 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.269 0.731 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.328 0.672 34 H 0.325 0.675 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 12.604 6.892 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.180 5.180 3 C -0.095 4.095 4 C -0.229 4.229 5 C -0.136 4.136 6 C -0.102 4.102 7 C -0.142 4.142 8 C 0.020 3.980 9 C 0.037 3.963 10 H 0.042 0.958 11 C -0.628 4.628 12 H 0.080 0.920 13 C -0.175 4.175 14 N -0.539 5.539 15 Si 0.877 3.123 16 H -0.212 1.212 17 H -0.210 1.210 18 H -0.205 1.205 19 C -0.073 4.073 20 N -0.380 5.380 21 C -0.167 4.167 22 C -0.003 4.003 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.048 11.851 6.800 14.942 hybrid contribution 0.360 0.610 -0.101 0.716 sum -5.688 12.462 6.699 15.249 Atomic orbital electron populations 1.21815 0.78098 1.03628 1.02367 1.43697 1.05313 1.04509 1.64443 1.21547 0.90636 0.90631 1.06726 1.21568 0.95515 0.93254 1.12580 1.19037 0.92364 0.92948 1.09208 1.20147 0.97052 0.92277 1.00735 1.20526 0.96819 0.94523 1.02289 1.19661 0.91662 0.95763 0.90943 1.18174 0.95935 0.88096 0.94108 0.95798 1.21972 1.34707 0.97829 1.08297 0.92003 1.25766 0.99314 0.94768 0.97686 1.70839 1.19860 1.37536 1.25661 0.84012 0.76087 0.76287 0.75894 1.21167 1.21009 1.20526 1.22502 0.98587 0.96755 0.89422 1.58951 1.07810 1.66398 1.04803 1.19790 0.98977 0.88470 1.09425 1.18248 0.89873 0.88034 1.04107 0.91889 0.90620 0.90314 0.82450 0.84463 0.87161 0.86376 0.92082 0.95101 0.91749 0.86064 0.86453 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 11.03 59.85 0.66 1.58 16 2 N -0.49 -7.62 3.18 -121.80 -0.39 -8.01 16 3 C 0.03 0.40 11.29 -16.73 -0.19 0.21 16 4 C -0.20 -3.16 11.08 -37.67 -0.42 -3.58 16 5 C -0.13 -2.50 6.37 -105.14 -0.67 -3.17 16 6 C -0.08 -1.61 10.05 -39.64 -0.40 -2.01 16 7 C -0.12 -2.62 8.50 -39.94 -0.34 -2.96 16 8 C 0.02 0.47 4.50 -104.58 -0.47 0.00 16 9 C 0.06 1.33 1.66 -92.93 -0.15 1.17 16 10 H 0.02 0.57 6.53 -51.93 -0.34 0.23 16 11 C -0.59 -16.23 8.54 -34.44 -0.29 -16.53 16 12 H 0.06 1.86 7.78 -52.48 -0.41 1.45 16 13 C 0.03 0.84 5.32 -17.82 -0.09 0.75 16 14 N -0.90 -27.30 13.69 55.43 0.76 -26.55 16 15 Si 1.05 24.61 26.27 -169.99 -4.47 20.15 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -5.98 5.67 56.52 0.32 -5.66 16 19 C 0.06 1.23 5.74 -3.83 -0.02 1.21 16 20 N -0.85 -15.40 9.36 -10.37 -0.10 -15.49 16 21 C -0.15 -2.99 9.57 -39.43 -0.38 -3.36 16 22 C 0.10 1.94 6.81 -83.99 -0.57 1.37 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 26 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.12 2.55 7.49 -52.48 -0.39 2.15 16 30 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 31 H 0.03 0.70 4.74 -51.93 -0.25 0.45 16 32 H 0.06 1.42 7.15 -51.93 -0.37 1.05 16 33 H 0.33 5.56 8.99 -39.29 -0.35 5.20 16 34 H 0.32 5.04 9.08 -39.29 -0.36 4.69 16 35 H 0.11 2.04 7.92 -52.49 -0.42 1.62 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -31.78 289.80 -7.81 -39.60 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.65 Total: 11.26 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.34 Total: -25.33 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.27 Total: -50.04 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.47 Total: 20.15 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.78 -7.81 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.373 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds