Wall clock time and date at job start Mon Mar 30 2020 07:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36836 * 125.06100 * 2 1 4 4 C 1.34237 * 109.92930 * 180.02562 * 3 2 1 5 5 C 1.46490 * 106.99768 * 359.97438 * 4 3 2 6 6 C 1.39625 * 134.02527 * 179.97438 * 5 4 3 7 7 C 1.36633 * 119.75950 * 179.73290 * 6 5 4 8 8 C 1.38832 * 120.52794 * 0.54973 * 7 6 5 9 9 C 1.50692 * 119.66876 * 179.74032 * 8 7 6 10 10 H 1.08999 * 109.47453 * 179.72800 * 9 8 7 11 11 C 1.50702 * 109.47014 * 299.72854 * 9 8 7 12 12 H 1.08005 * 120.00195 * 5.57446 * 11 9 8 13 13 C 1.37877 * 120.00214 * 185.57854 * 11 9 8 14 14 N 1.31512 * 120.00421 * 196.26392 * 13 11 9 15 15 Si 1.86806 * 119.99763 * 16.26007 * 13 11 9 16 16 H 1.48503 * 109.47094 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47283 * 60.00356 * 15 13 11 18 18 H 1.48502 * 109.46932 * 300.00046 * 15 13 11 19 19 C 1.52996 * 109.47252 * 59.72492 * 9 8 7 20 20 N 1.46900 * 109.47081 * 65.89298 * 19 9 8 21 21 C 1.37751 * 120.66433 * 359.46541 * 8 7 6 22 22 C 1.37690 * 125.06730 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47321 * 269.97974 * 1 2 3 24 24 H 1.09000 * 109.46876 * 29.98155 * 1 2 3 25 25 H 1.09001 * 109.46862 * 149.98004 * 1 2 3 26 26 H 1.08000 * 125.03104 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.49925 * 179.97438 * 4 3 2 28 28 H 1.07996 * 120.12204 * 0.02562 * 6 5 4 29 29 H 1.08003 * 119.73479 * 180.28983 * 7 6 5 30 30 H 0.97005 * 119.99850 * 354.31949 * 14 13 11 31 31 H 1.08999 * 109.47532 * 185.89907 * 19 9 8 32 32 H 1.09002 * 109.46856 * 305.89885 * 19 9 8 33 33 H 1.00908 * 110.99273 * 56.04937 * 20 19 9 34 34 H 1.00900 * 111.00310 * 179.97438 * 20 19 9 35 35 H 1.07997 * 120.11028 * 180.23355 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5469 0.7696 -0.0006 5 6 3.5946 -0.6945 -0.0003 6 6 4.6296 -1.6316 -0.0011 7 6 4.3362 -2.9661 0.0049 8 6 3.0168 -3.3981 0.0004 9 6 2.7154 -4.8746 0.0013 10 1 1.6358 -5.0250 0.0022 11 6 3.3100 -5.5094 -1.2294 12 1 3.9277 -4.9238 -1.8943 13 6 3.0656 -6.8377 -1.5065 14 7 3.8177 -7.4774 -2.3752 15 14 1.6662 -7.7288 -0.6479 16 1 1.6147 -9.1370 -1.1164 17 1 0.3818 -7.0542 -0.9643 18 1 1.8902 -7.7038 0.8199 19 6 3.3210 -5.5180 1.2503 20 7 2.6418 -5.0009 2.4458 21 6 1.9804 -2.4906 0.0008 22 6 2.2561 -1.1270 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8833 2.1355 -0.0004 27 1 4.3936 1.4400 -0.0011 28 1 5.6583 -1.3030 -0.0017 29 1 5.1371 -3.6906 0.0091 30 1 4.4905 -6.9959 -2.8816 31 1 3.1945 -6.5994 1.1997 32 1 4.3831 -5.2785 1.3037 33 1 1.6459 -5.1533 2.3902 34 1 3.0238 -5.4113 3.2847 35 1 0.9574 -2.8366 0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:18 Heat of formation + Delta-G solvation = 35.300829 kcal Electronic energy + Delta-G solvation = -17282.439634 eV Core-core repulsion = 14665.602003 eV Total energy + Delta-G solvation = -2616.837631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.59 seconds Orbital eigenvalues (eV) -42.05103 -38.94192 -36.29672 -34.43000 -33.62804 -31.48011 -31.11039 -28.45826 -27.01373 -25.16051 -23.51758 -23.16260 -21.41567 -20.46639 -19.55736 -17.77537 -17.13786 -16.76043 -16.35398 -16.08140 -15.60481 -15.19448 -14.96278 -14.72575 -14.51098 -14.14156 -13.84638 -13.57588 -13.17548 -13.03382 -12.84596 -12.73022 -12.16026 -11.93097 -11.82273 -11.79744 -11.45919 -11.08787 -10.48776 -10.35102 -9.41145 -8.95630 -8.67720 -8.34061 -6.36918 0.39925 0.87053 1.40371 1.49917 1.68749 1.94589 2.06851 2.46372 3.04212 3.14711 3.85062 3.93725 3.99648 4.10923 4.22325 4.38510 4.48295 4.49913 4.63778 4.70449 4.72835 4.73681 4.92235 4.94024 5.12618 5.17533 5.33599 5.42318 5.73718 5.83841 5.94991 6.00406 6.03761 6.14606 6.37309 6.46592 6.56561 6.59791 6.77097 7.40956 8.63554 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028924 B = 0.006770 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.825391 B = 4135.185980 C = 4299.790886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.495 5.495 3 C 0.054 3.946 4 C -0.227 4.227 5 C -0.150 4.150 6 C -0.087 4.087 7 C -0.147 4.147 8 C -0.010 4.010 9 C 0.061 3.939 10 H 0.028 0.972 11 C -0.589 4.589 12 H 0.017 0.983 13 C -0.021 4.021 14 N -0.938 5.938 15 Si 1.087 2.913 16 H -0.291 1.291 17 H -0.264 1.264 18 H -0.244 1.244 19 C 0.070 3.930 20 N -0.846 5.846 21 C -0.148 4.148 22 C 0.082 3.918 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.210 0.790 27 H 0.162 0.838 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.251 0.749 31 H 0.022 0.978 32 H 0.049 0.951 33 H 0.340 0.660 34 H 0.343 0.657 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 15.230 8.661 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.179 5.179 3 C -0.071 4.071 4 C -0.252 4.252 5 C -0.154 4.154 6 C -0.105 4.105 7 C -0.166 4.166 8 C -0.011 4.011 9 C 0.041 3.959 10 H 0.046 0.954 11 C -0.627 4.627 12 H 0.035 0.965 13 C -0.219 4.219 14 N -0.574 5.574 15 Si 0.909 3.091 16 H -0.217 1.217 17 H -0.189 1.189 18 H -0.169 1.169 19 C -0.060 4.060 20 N -0.376 5.376 21 C -0.169 4.169 22 C -0.024 4.024 23 H 0.097 0.903 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.227 0.773 27 H 0.179 0.821 28 H 0.148 0.852 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.460 14.516 8.595 18.872 hybrid contribution 1.108 0.037 -0.682 1.301 sum -7.352 14.553 7.914 18.124 Atomic orbital electron populations 1.22154 0.75426 1.05173 1.03915 1.44084 1.07057 1.03670 1.63067 1.22379 0.89864 0.92084 1.02756 1.21916 0.97556 0.91522 1.14171 1.19531 0.92281 0.95039 1.08579 1.20354 0.98548 0.91652 0.99977 1.20449 0.96292 0.95318 1.04542 1.19563 0.92511 0.95231 0.93840 1.18023 0.95616 0.89296 0.92916 0.95357 1.22110 1.33574 0.97768 1.09238 0.96451 1.27248 1.00799 0.96114 0.97707 1.70978 1.21065 1.37798 1.27570 0.83553 0.73712 0.74881 0.76986 1.21732 1.18864 1.16909 1.22128 0.97970 0.95829 0.90118 1.58761 1.08417 1.66259 1.04158 1.19836 0.98793 0.89281 1.08984 1.18332 0.90978 0.88572 1.04489 0.90294 0.87061 0.90925 0.77320 0.82077 0.85237 0.88385 0.93983 0.96004 0.93220 0.84805 0.84407 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 11.03 127.77 1.41 2.73 16 2 N -0.49 -13.43 3.18 -539.28 -1.71 -15.15 16 3 C 0.05 1.23 11.29 83.00 0.94 2.16 16 4 C -0.23 -6.33 11.08 23.51 0.26 -6.07 16 5 C -0.15 -5.52 6.37 -20.20 -0.13 -5.65 16 6 C -0.09 -3.41 10.05 22.23 0.22 -3.18 16 7 C -0.15 -6.57 8.50 22.04 0.19 -6.39 16 8 C -0.01 -0.46 4.50 -19.84 -0.09 -0.55 16 9 C 0.06 2.91 1.66 -12.29 -0.02 2.89 16 10 H 0.03 1.32 6.53 -2.39 -0.02 1.31 16 11 C -0.59 -33.96 8.54 25.60 0.22 -33.75 16 12 H 0.02 1.12 7.78 -2.91 -0.02 1.09 16 13 C -0.02 -1.22 5.32 84.66 0.45 -0.77 16 14 N -0.94 -59.23 13.69 21.45 0.29 -58.93 16 15 Si 1.09 49.40 26.27 68.60 1.80 51.21 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.24 -9.72 5.67 99.48 0.56 -9.16 16 19 C 0.07 3.02 5.74 86.30 0.50 3.52 16 20 N -0.85 -29.23 9.36 -186.72 -1.75 -30.98 16 21 C -0.15 -6.02 9.57 22.37 0.21 -5.81 16 22 C 0.08 3.02 6.81 39.03 0.27 3.28 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 26 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 27 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 29 H 0.10 4.60 7.49 -2.91 -0.02 4.58 16 30 H 0.25 16.21 8.73 -92.70 -0.81 15.40 16 31 H 0.02 0.97 4.74 -2.39 -0.01 0.96 16 32 H 0.05 2.26 7.15 -2.39 -0.02 2.24 16 33 H 0.34 10.64 8.99 -89.69 -0.81 9.84 16 34 H 0.34 9.93 9.08 -89.69 -0.81 9.12 16 35 H 0.12 4.31 7.92 -2.91 -0.02 4.29 16 Total: -1.00 -73.04 289.80 2.36 -70.67 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.69 Total: 30.76 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 4.42 Total: -47.58 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.17 Total: -105.06 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.80 Total: 51.21 kcal Total: -73.04 2.36 -70.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.975 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.59 seconds