Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36661 * 120.11452 * 2 1 4 4 C 1.38791 * 120.52678 * 179.97438 * 3 2 1 5 5 C 1.37796 * 120.66408 * 359.95391 * 4 3 2 6 6 C 1.39077 * 119.77869 * 0.05131 * 5 4 3 7 7 N 1.37694 * 133.51285 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06712 * 359.93464 * 7 6 5 9 9 C 1.36841 * 109.87424 * 179.97438 * 7 6 5 10 10 C 1.50699 * 125.03055 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47102 * 155.02411 * 10 9 7 12 12 C 1.50701 * 109.47177 * 275.02172 * 10 9 7 13 13 H 1.08001 * 119.99788 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00175 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99941 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47160 * 90.00224 * 16 14 12 18 18 H 1.48500 * 109.47137 * 210.00153 * 16 14 12 19 19 H 1.48501 * 109.47188 * 330.00377 * 16 14 12 20 20 C 1.53002 * 109.47065 * 35.02001 * 10 9 7 21 21 N 1.46906 * 109.47053 * 65.00331 * 20 10 9 22 22 C 1.34230 * 109.93590 * 0.26042 * 9 7 6 23 23 C 1.39584 * 120.11857 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47438 * 270.01751 * 1 2 3 25 25 H 1.09004 * 109.47046 * 30.02364 * 1 2 3 26 26 H 1.09003 * 109.46805 * 150.01864 * 1 2 3 27 27 H 1.08001 * 119.74193 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.66773 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.10874 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00140 * 179.97438 * 15 14 12 31 31 H 1.08992 * 109.47056 * 305.00001 * 20 10 9 32 32 H 1.09004 * 109.47006 * 185.00118 * 20 10 9 33 33 H 1.00897 * 110.99706 * 179.97438 * 21 20 10 34 34 H 1.00899 * 110.99484 * 303.95475 * 21 20 10 35 35 H 1.08006 * 126.50114 * 179.71327 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2918 0.0119 0.0020 6 6 3.6145 -1.2027 0.0019 7 7 4.0249 -2.5171 0.0036 8 1 4.9489 -2.8124 0.0044 9 6 2.9352 -3.3447 0.0031 10 6 2.9927 -4.8506 0.0051 11 1 2.0750 -5.2487 0.4383 12 6 3.1381 -5.3497 -1.4094 13 1 3.1847 -4.6466 -2.2279 14 6 3.2127 -6.7036 -1.6585 15 7 3.1565 -7.5598 -0.6617 16 14 3.3937 -7.3222 -3.4119 17 1 4.8350 -7.4323 -3.7516 18 1 2.7528 -8.6561 -3.5348 19 1 2.7370 -6.3698 -4.3430 20 6 4.1915 -5.3141 0.8352 21 7 3.9923 -4.9310 2.2394 22 6 1.8075 -2.6167 -0.0045 23 6 2.2074 -1.2074 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6503 2.1161 -0.0004 28 1 4.1083 2.1343 0.0001 29 1 5.3716 0.0302 0.0029 30 1 3.2086 -8.5123 -0.8370 31 1 5.0992 -4.8451 0.4558 32 1 4.2854 -6.3978 0.7641 33 1 4.7710 -5.2266 2.8087 34 1 3.8380 -3.9375 2.3246 35 1 0.7969 -2.9976 -0.0111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = 39.150327 kcal Electronic energy + Delta-G solvation = -17205.640651 eV Core-core repulsion = 14588.969946 eV Total energy + Delta-G solvation = -2616.670704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75314 -37.12383 -34.77916 -32.62337 -32.32745 -29.81739 -29.36611 -27.42675 -25.95228 -24.03109 -21.89701 -21.38785 -19.99809 -19.20446 -16.84281 -16.55465 -15.58484 -15.04543 -14.72103 -14.29368 -13.97144 -13.90428 -13.62898 -12.99646 -12.86419 -12.56646 -12.26744 -12.00868 -11.92088 -11.25043 -11.18481 -11.03162 -10.72264 -10.68045 -10.48558 -10.29234 -9.76305 -9.41222 -8.94717 -8.60622 -7.79801 -7.58475 -6.97664 -6.15185 -4.25819 1.59970 2.08316 3.21726 3.29443 3.32894 3.52543 3.77851 4.30569 4.34113 5.09408 5.12280 5.26527 5.43959 5.57732 5.59436 5.73880 5.78237 5.91358 6.03871 6.10425 6.25335 6.33186 6.50133 6.53730 6.64883 6.69109 6.87933 7.08114 7.26083 7.36877 7.44329 7.63039 7.73112 7.92713 8.02078 8.17651 8.19431 8.29345 8.78316 9.40455 10.88272 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.006448 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.220708 B = 4341.518545 C = 4633.529947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.048 4.048 3 C -0.158 4.158 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.086 3.914 7 N -0.592 5.592 8 H 0.409 0.591 9 C 0.149 3.851 10 C 0.100 3.900 11 H 0.064 0.936 12 C -0.516 4.516 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.062 3.938 21 N -0.852 5.852 22 C -0.236 4.236 23 C -0.092 4.092 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.264 0.736 31 H -0.009 1.009 32 H 0.113 0.887 33 H 0.322 0.678 34 H 0.322 0.678 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 11.776 2.401 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.048 4.048 3 C -0.177 4.177 4 C -0.134 4.134 5 C -0.156 4.156 6 C -0.022 4.022 7 N -0.195 5.195 8 H 0.245 0.755 9 C 0.041 3.959 10 C 0.081 3.919 11 H 0.082 0.918 12 C -0.555 4.555 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.068 4.068 21 N -0.379 5.379 22 C -0.259 4.259 23 C -0.098 4.098 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.010 0.990 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.184 11.011 2.394 11.270 hybrid contribution 1.575 0.092 -1.132 1.942 sum 1.759 11.103 1.262 11.313 Atomic orbital electron populations 1.20703 0.91789 1.02274 1.01835 1.19010 0.95323 0.91344 0.99171 1.20341 0.93996 0.96777 1.06607 1.20558 0.93980 0.96450 1.02435 1.19907 0.98548 0.89851 1.07287 1.18254 0.94004 0.85142 1.04751 1.41950 1.08754 1.03589 1.65166 0.75486 1.21391 0.84847 0.94710 0.94969 1.17792 0.96881 0.81233 0.96023 0.91820 1.20982 1.51649 0.91774 0.91114 0.92225 1.24972 0.94630 0.96706 0.97407 1.69866 1.49240 1.02376 1.30514 0.86504 0.78225 0.78317 0.84517 1.20671 1.20953 1.19729 1.22146 0.95652 1.04363 0.84618 1.58906 1.47711 1.19882 1.11419 1.21279 0.97880 0.89494 1.17261 1.19136 0.91835 0.93475 1.05315 0.91599 0.92226 0.91431 0.86947 0.86673 0.87149 0.92559 0.99037 0.86921 0.86709 0.86651 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.95 36.01 0.36 -1.11 16 2 C -0.05 -0.78 5.87 -104.69 -0.61 -1.40 16 3 C -0.16 -2.29 9.62 -39.95 -0.38 -2.68 16 4 C -0.12 -1.63 10.01 -39.54 -0.40 -2.03 16 5 C -0.14 -2.10 10.08 -39.43 -0.40 -2.50 16 6 C 0.09 1.57 7.28 -83.99 -0.61 0.96 16 7 N -0.59 -11.13 5.81 -6.95 -0.04 -11.17 16 8 H 0.41 7.02 7.89 -40.82 -0.32 6.69 16 9 C 0.15 3.17 4.78 -81.77 -0.39 2.78 16 10 C 0.10 2.39 2.34 -92.92 -0.22 2.18 16 11 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 12 C -0.52 -13.54 8.55 -34.44 -0.29 -13.84 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 15 N -0.88 -23.92 11.29 55.43 0.63 -23.30 16 16 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.06 1.38 5.91 -3.82 -0.02 1.36 16 21 N -0.85 -16.48 9.62 -10.37 -0.10 -16.58 16 22 C -0.24 -4.86 10.64 -37.67 -0.40 -5.26 16 23 C -0.09 -1.75 6.14 -105.14 -0.65 -2.40 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 27 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H -0.01 -0.18 7.09 -51.93 -0.37 -0.55 16 32 H 0.11 2.85 5.95 -51.93 -0.31 2.55 16 33 H 0.32 5.43 9.08 -39.29 -0.36 5.07 16 34 H 0.32 5.99 8.05 -39.29 -0.32 5.67 16 35 H 0.14 2.73 8.06 -52.48 -0.42 2.31 16 LS Contribution 292.65 15.07 4.41 4.41 Total: -1.00 -27.77 292.65 -8.82 -36.58 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -4.58 Total: 16.79 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -4.11 Total: -22.30 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.49 Total: -51.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.77 -8.82 -36.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.735 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds