Wall clock time and date at job start Mon Mar 30 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36661 * 120.11452 * 2 1 4 4 C 1.38791 * 120.52678 * 179.97438 * 3 2 1 5 5 C 1.37796 * 120.66408 * 359.95391 * 4 3 2 6 6 C 1.39077 * 119.77869 * 0.05131 * 5 4 3 7 7 N 1.37694 * 133.51285 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06712 * 359.93464 * 7 6 5 9 9 C 1.36841 * 109.87424 * 179.97438 * 7 6 5 10 10 C 1.50699 * 125.03055 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47102 * 155.02411 * 10 9 7 12 12 C 1.50701 * 109.47177 * 275.02172 * 10 9 7 13 13 H 1.08001 * 119.99788 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00175 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99941 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47160 * 90.00224 * 16 14 12 18 18 H 1.48500 * 109.47137 * 210.00153 * 16 14 12 19 19 H 1.48501 * 109.47188 * 330.00377 * 16 14 12 20 20 C 1.53002 * 109.47065 * 35.02001 * 10 9 7 21 21 N 1.46906 * 109.47053 * 65.00331 * 20 10 9 22 22 C 1.34230 * 109.93590 * 0.26042 * 9 7 6 23 23 C 1.39584 * 120.11857 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47438 * 270.01751 * 1 2 3 25 25 H 1.09004 * 109.47046 * 30.02364 * 1 2 3 26 26 H 1.09003 * 109.46805 * 150.01864 * 1 2 3 27 27 H 1.08001 * 119.74193 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.66773 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.10874 * 180.02562 * 5 4 3 30 30 H 0.96996 * 120.00140 * 179.97438 * 15 14 12 31 31 H 1.08992 * 109.47056 * 305.00001 * 20 10 9 32 32 H 1.09004 * 109.47006 * 185.00118 * 20 10 9 33 33 H 1.00897 * 110.99706 * 179.97438 * 21 20 10 34 34 H 1.00899 * 110.99484 * 303.95475 * 21 20 10 35 35 H 1.08006 * 126.50114 * 179.71327 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2918 0.0119 0.0020 6 6 3.6145 -1.2027 0.0019 7 7 4.0249 -2.5171 0.0036 8 1 4.9489 -2.8124 0.0044 9 6 2.9352 -3.3447 0.0031 10 6 2.9927 -4.8506 0.0051 11 1 2.0750 -5.2487 0.4383 12 6 3.1381 -5.3497 -1.4094 13 1 3.1847 -4.6466 -2.2279 14 6 3.2127 -6.7036 -1.6585 15 7 3.1565 -7.5598 -0.6617 16 14 3.3937 -7.3222 -3.4119 17 1 4.8350 -7.4323 -3.7516 18 1 2.7528 -8.6561 -3.5348 19 1 2.7370 -6.3698 -4.3430 20 6 4.1915 -5.3141 0.8352 21 7 3.9923 -4.9310 2.2394 22 6 1.8075 -2.6167 -0.0045 23 6 2.2074 -1.2074 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6503 2.1161 -0.0004 28 1 4.1083 2.1343 0.0001 29 1 5.3716 0.0302 0.0029 30 1 3.2086 -8.5123 -0.8370 31 1 5.0992 -4.8451 0.4558 32 1 4.2854 -6.3978 0.7641 33 1 4.7710 -5.2266 2.8087 34 1 3.8380 -3.9375 2.3246 35 1 0.7969 -2.9976 -0.0111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:21 Heat of formation + Delta-G solvation = 22.098293 kcal Electronic energy + Delta-G solvation = -17206.380083 eV Core-core repulsion = 14588.969946 eV Total energy + Delta-G solvation = -2617.410136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.15446 -38.49961 -36.47302 -34.23265 -33.84583 -31.46515 -30.76264 -28.89360 -27.23348 -25.94001 -23.45258 -22.68507 -21.40997 -20.81524 -18.62730 -18.10549 -16.93529 -16.86162 -16.21111 -15.79630 -15.44979 -15.30438 -15.19912 -14.29394 -14.21111 -14.09299 -13.80388 -13.60797 -13.13499 -13.00384 -12.75887 -12.51229 -12.42792 -12.18069 -12.09578 -11.70837 -11.49268 -11.29419 -10.61957 -10.32478 -9.45149 -8.92979 -8.42554 -8.13322 -6.34465 0.33180 0.83511 1.38480 1.40996 1.50864 1.96105 2.34903 2.41176 3.06312 3.08169 3.88750 3.96200 4.09492 4.21318 4.38438 4.48458 4.54006 4.58824 4.75174 4.82851 4.88664 4.90719 5.03361 5.18737 5.21959 5.38238 5.42123 5.56683 5.68085 5.77910 5.85109 6.01131 6.12188 6.20222 6.41619 6.44194 6.65614 6.75811 6.81831 7.35161 8.85713 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.006448 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.220708 B = 4341.518545 C = 4633.529947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.102 4.102 5 C -0.145 4.145 6 C 0.072 3.928 7 N -0.588 5.588 8 H 0.413 0.587 9 C 0.128 3.872 10 C 0.107 3.893 11 H 0.024 0.976 12 C -0.532 4.532 13 H 0.047 0.953 14 C 0.024 3.976 15 N -0.906 5.906 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.274 1.274 20 C 0.077 3.923 21 N -0.851 5.851 22 C -0.248 4.248 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.266 0.734 31 H 0.000 1.000 32 H 0.083 0.917 33 H 0.339 0.661 34 H 0.330 0.670 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 14.451 2.109 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.062 4.062 3 C -0.174 4.174 4 C -0.121 4.121 5 C -0.166 4.166 6 C -0.034 4.034 7 N -0.191 5.191 8 H 0.251 0.749 9 C 0.019 3.981 10 C 0.087 3.913 11 H 0.042 0.958 12 C -0.571 4.571 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.544 5.544 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.199 1.199 20 C -0.054 4.054 21 N -0.380 5.380 22 C -0.272 4.272 23 C -0.128 4.128 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.893 13.698 2.117 13.890 hybrid contribution 1.319 -0.577 -1.000 1.753 sum 2.211 13.121 1.117 13.353 Atomic orbital electron populations 1.20741 0.90213 1.02867 1.02655 1.19413 0.96818 0.91067 0.98876 1.20801 0.94551 0.97317 1.04728 1.21095 0.94101 0.97439 0.99453 1.20290 0.99999 0.89120 1.07173 1.18653 0.94157 0.85480 1.05148 1.41773 1.08271 1.03738 1.65324 0.74932 1.20879 0.86106 0.93545 0.97558 1.17466 0.95591 0.83297 0.94929 0.95813 1.21179 1.51866 0.91977 0.92038 0.93486 1.25665 0.94294 0.96815 1.00894 1.69987 1.49715 1.02537 1.32168 0.85579 0.78433 0.77650 0.80158 1.19794 1.20451 1.19931 1.21764 0.95248 1.02333 0.86007 1.58740 1.48695 1.20528 1.10070 1.21395 0.97464 0.91194 1.17144 1.19330 0.92714 0.93354 1.07378 0.90615 0.89607 0.92864 0.83560 0.82790 0.84806 0.92472 0.98172 0.89916 0.84819 0.85815 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 9.95 71.24 0.71 -2.01 16 2 C -0.06 -1.88 5.87 -19.91 -0.12 -2.00 16 3 C -0.15 -3.88 9.62 22.03 0.21 -3.67 16 4 C -0.10 -2.44 10.01 22.30 0.22 -2.21 16 5 C -0.15 -4.09 10.08 22.37 0.23 -3.87 16 6 C 0.07 2.58 7.28 39.03 0.28 2.86 16 7 N -0.59 -22.26 5.81 -175.91 -1.02 -23.28 16 8 H 0.41 14.21 7.89 -92.71 -0.73 13.48 16 9 C 0.13 5.64 4.78 40.86 0.20 5.84 16 10 C 0.11 5.35 2.34 -12.29 -0.03 5.32 16 11 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 12 C -0.53 -28.94 8.55 25.60 0.22 -28.72 16 13 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 14 C 0.02 1.28 5.29 84.65 0.45 1.73 16 15 N -0.91 -50.54 11.29 21.45 0.24 -50.30 16 16 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.08 3.54 5.91 86.30 0.51 4.05 16 21 N -0.85 -33.36 9.62 -186.71 -1.80 -35.15 16 22 C -0.25 -10.64 10.64 23.51 0.25 -10.39 16 23 C -0.12 -4.64 6.14 -20.20 -0.12 -4.76 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.67 8.08 -2.38 -0.02 1.65 16 26 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.00 0.01 7.09 -2.39 -0.02 -0.01 16 32 H 0.08 4.34 5.95 -2.38 -0.01 4.32 16 33 H 0.34 11.31 9.08 -89.70 -0.81 10.50 16 34 H 0.33 12.34 8.05 -89.69 -0.72 11.62 16 35 H 0.13 5.53 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -61.49 292.65 1.31 -60.18 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -1.14 Total: 41.53 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.01 Total: -37.83 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -2.58 Total: -108.73 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -61.49 1.31 -60.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.278 kcal (2) G-P(sol) polarization free energy of solvation -61.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds