Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36654 * 120.11677 * 2 1 4 4 C 1.38797 * 120.53259 * 180.02562 * 3 2 1 5 5 C 1.37783 * 120.65989 * 0.02562 * 4 3 2 6 6 C 1.39090 * 119.78077 * 0.02562 * 5 4 3 7 7 N 1.37691 * 133.50732 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06535 * 0.02562 * 7 6 5 9 9 C 1.36829 * 109.87131 * 179.97438 * 7 6 5 10 10 C 1.50702 * 125.03231 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47414 * 205.02369 * 10 9 7 12 12 C 1.50708 * 109.47072 * 85.02879 * 10 9 7 13 13 H 1.08000 * 119.99208 * 354.54707 * 12 10 9 14 14 C 1.37874 * 119.99932 * 174.55504 * 12 10 9 15 15 N 1.31516 * 120.00156 * 350.62156 * 14 12 10 16 16 Si 1.86804 * 119.99643 * 170.62742 * 14 12 10 17 17 H 1.48498 * 109.47257 * 89.99800 * 16 14 12 18 18 H 1.48495 * 109.46768 * 209.99785 * 16 14 12 19 19 H 1.48495 * 109.47220 * 329.99620 * 16 14 12 20 20 C 1.53001 * 109.47215 * 325.02785 * 10 9 7 21 21 N 1.46894 * 109.47106 * 296.88113 * 20 10 9 22 22 C 1.34240 * 109.93978 * 0.02562 * 9 7 6 23 23 C 1.39593 * 120.11967 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46710 * 269.95130 * 1 2 3 25 25 H 1.08999 * 109.47298 * 29.95197 * 1 2 3 26 26 H 1.08999 * 109.47065 * 149.95454 * 1 2 3 27 27 H 1.08004 * 119.73947 * 0.03199 * 3 2 1 28 28 H 1.08001 * 119.66984 * 180.29393 * 4 3 2 29 29 H 1.08007 * 120.11309 * 179.97438 * 5 4 3 30 30 H 0.96993 * 119.99583 * 180.02562 * 15 14 12 31 31 H 1.09009 * 109.46746 * 56.87830 * 20 10 9 32 32 H 1.08997 * 109.46966 * 176.87720 * 20 10 9 33 33 H 1.00904 * 111.00381 * 184.53601 * 21 20 10 34 34 H 1.00905 * 111.00021 * 308.48975 * 21 20 10 35 35 H 1.07997 * 126.50007 * 180.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0016 6 6 3.6145 -1.2028 -0.0027 7 7 4.0250 -2.5170 -0.0034 8 1 4.9490 -2.8122 -0.0029 9 6 2.9355 -3.3447 -0.0038 10 6 2.9930 -4.8506 -0.0052 11 1 2.0762 -5.2489 -0.4400 12 6 3.1357 -5.3492 1.4098 13 1 3.2687 -4.6464 2.2190 14 6 3.0965 -6.7023 1.6712 15 7 2.7525 -7.5457 0.7225 16 14 3.5319 -7.3378 3.3730 17 1 2.3061 -7.3929 4.2094 18 1 4.1148 -8.6988 3.2589 19 1 4.5208 -6.4270 4.0035 20 6 4.1934 -5.3144 -0.8328 21 7 4.0180 -4.8923 -2.2289 22 6 1.8076 -2.6167 -0.0040 23 6 2.2075 -1.2074 -0.0005 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 1.6503 2.1161 0.0005 28 1 4.1084 2.1344 0.0043 29 1 5.3717 0.0302 -0.0024 30 1 2.7246 -8.4976 0.9065 31 1 5.1047 -4.8713 -0.4310 32 1 4.2674 -6.4009 -0.7882 33 1 4.7609 -5.2497 -2.8108 34 1 3.1154 -5.1740 -2.5812 35 1 0.7971 -2.9978 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = 36.338838 kcal Electronic energy + Delta-G solvation = -17173.338919 eV Core-core repulsion = 14556.546300 eV Total energy + Delta-G solvation = -2616.792620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58726 -36.98924 -34.79291 -32.51591 -32.36341 -29.77566 -29.24983 -27.35209 -25.87140 -24.02878 -21.86922 -21.23942 -19.92994 -19.16174 -16.72753 -16.65064 -15.43993 -15.01326 -14.74798 -14.17034 -13.91843 -13.75934 -13.26098 -12.96737 -12.77765 -12.67153 -12.17938 -12.13971 -11.86085 -11.41626 -11.09213 -11.05178 -10.72504 -10.67639 -10.39434 -10.13964 -9.82566 -9.50400 -8.84809 -8.59339 -7.82946 -7.43983 -6.84432 -6.22729 -4.27899 1.72432 2.21607 3.20062 3.27433 3.31142 3.69307 3.94748 4.30961 4.44354 5.06743 5.22398 5.35908 5.50183 5.56830 5.68067 5.85171 5.89613 5.98542 6.14092 6.16764 6.33086 6.38458 6.53053 6.65734 6.73772 6.75741 6.97711 7.15332 7.22976 7.31428 7.46869 7.72141 7.73586 7.80984 8.03226 8.12452 8.21519 8.40048 8.75996 9.37182 10.83521 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.006409 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.272677 B = 4367.860157 C = 4609.983844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.051 4.051 3 C -0.160 4.160 4 C -0.118 4.118 5 C -0.134 4.134 6 C 0.087 3.913 7 N -0.579 5.579 8 H 0.409 0.591 9 C 0.173 3.827 10 C 0.098 3.902 11 H 0.059 0.941 12 C -0.516 4.516 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.065 3.935 21 N -0.857 5.857 22 C -0.248 4.248 23 C -0.091 4.091 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.322 0.678 34 H 0.335 0.665 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 9.972 -2.930 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.051 4.051 3 C -0.179 4.179 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.020 4.020 7 N -0.180 5.180 8 H 0.246 0.754 9 C 0.063 3.937 10 C 0.078 3.922 11 H 0.076 0.924 12 C -0.555 4.555 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.065 4.065 21 N -0.384 5.384 22 C -0.271 4.271 23 C -0.096 4.096 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.840 10.439 -2.667 10.807 hybrid contribution 0.706 -1.628 0.740 1.922 sum 1.546 8.811 -1.927 9.151 Atomic orbital electron populations 1.20684 0.91958 1.02052 1.01763 1.18983 0.95192 0.91417 0.99526 1.20303 0.93995 0.96678 1.06924 1.20524 0.93957 0.96394 1.02865 1.19898 0.98494 0.89899 1.07202 1.18231 0.93950 0.85231 1.04622 1.41794 1.08757 1.03346 1.64124 0.75413 1.21015 0.84799 0.94115 0.93738 1.17743 0.95885 0.82333 0.96211 0.92350 1.20954 1.51191 0.91765 0.91571 0.92118 1.24955 0.94394 0.96839 0.97315 1.69938 1.46261 1.02994 1.33168 0.86547 0.78990 0.78122 0.84195 1.20390 1.21066 1.19767 1.21959 0.98766 0.99523 0.86247 1.59019 1.06769 1.68010 1.04611 1.21186 0.97671 0.89610 1.18648 1.19096 0.91872 0.93389 1.05274 0.91710 0.92346 0.91570 0.87127 0.86825 0.87223 0.92638 0.93932 0.93095 0.86851 0.85348 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.95 36.01 0.36 -1.16 16 2 C -0.05 -0.87 5.87 -104.69 -0.61 -1.48 16 3 C -0.16 -2.44 9.62 -39.95 -0.38 -2.83 16 4 C -0.12 -1.77 10.01 -39.54 -0.40 -2.17 16 5 C -0.13 -2.21 10.08 -39.43 -0.40 -2.61 16 6 C 0.09 1.69 7.28 -83.99 -0.61 1.08 16 7 N -0.58 -11.43 5.84 -6.95 -0.04 -11.47 16 8 H 0.41 7.42 7.94 -40.82 -0.32 7.09 16 9 C 0.17 3.76 5.43 -81.77 -0.44 3.31 16 10 C 0.10 2.29 2.10 -92.92 -0.20 2.10 16 11 H 0.06 1.50 8.08 -51.93 -0.42 1.08 16 12 C -0.52 -13.41 8.47 -34.44 -0.29 -13.70 16 13 H 0.06 1.62 7.76 -52.49 -0.41 1.21 16 14 C 0.07 1.77 5.18 -17.82 -0.09 1.68 16 15 N -0.89 -23.74 12.15 55.43 0.67 -23.07 16 16 Si 0.89 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.07 1.40 5.87 -3.83 -0.02 1.37 16 21 N -0.86 -15.61 9.32 -10.37 -0.10 -15.71 16 22 C -0.25 -5.27 10.64 -37.67 -0.40 -5.67 16 23 C -0.09 -1.81 6.14 -105.14 -0.65 -2.45 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.68 8.08 -51.93 -0.42 0.27 16 26 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 27 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.04 0.89 7.18 -51.92 -0.37 0.51 16 32 H 0.05 1.21 6.83 -51.93 -0.35 0.85 16 33 H 0.32 5.10 9.08 -39.29 -0.36 4.74 16 34 H 0.33 6.07 8.93 -39.29 -0.35 5.72 16 35 H 0.13 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -27.67 295.30 -8.84 -36.51 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -4.14 Total: -22.53 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.54 Total: -50.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.67 -8.84 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.845 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds