Wall clock time and date at job start Mon Mar 30 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36654 * 120.11677 * 2 1 4 4 C 1.38797 * 120.53259 * 180.02562 * 3 2 1 5 5 C 1.37783 * 120.65989 * 0.02562 * 4 3 2 6 6 C 1.39090 * 119.78077 * 0.02562 * 5 4 3 7 7 N 1.37691 * 133.50732 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06535 * 0.02562 * 7 6 5 9 9 C 1.36829 * 109.87131 * 179.97438 * 7 6 5 10 10 C 1.50702 * 125.03231 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47414 * 205.02369 * 10 9 7 12 12 C 1.50708 * 109.47072 * 85.02879 * 10 9 7 13 13 H 1.08000 * 119.99208 * 354.54707 * 12 10 9 14 14 C 1.37874 * 119.99932 * 174.55504 * 12 10 9 15 15 N 1.31516 * 120.00156 * 350.62156 * 14 12 10 16 16 Si 1.86804 * 119.99643 * 170.62742 * 14 12 10 17 17 H 1.48498 * 109.47257 * 89.99800 * 16 14 12 18 18 H 1.48495 * 109.46768 * 209.99785 * 16 14 12 19 19 H 1.48495 * 109.47220 * 329.99620 * 16 14 12 20 20 C 1.53001 * 109.47215 * 325.02785 * 10 9 7 21 21 N 1.46894 * 109.47106 * 296.88113 * 20 10 9 22 22 C 1.34240 * 109.93978 * 0.02562 * 9 7 6 23 23 C 1.39593 * 120.11967 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46710 * 269.95130 * 1 2 3 25 25 H 1.08999 * 109.47298 * 29.95197 * 1 2 3 26 26 H 1.08999 * 109.47065 * 149.95454 * 1 2 3 27 27 H 1.08004 * 119.73947 * 0.03199 * 3 2 1 28 28 H 1.08001 * 119.66984 * 180.29393 * 4 3 2 29 29 H 1.08007 * 120.11309 * 179.97438 * 5 4 3 30 30 H 0.96993 * 119.99583 * 180.02562 * 15 14 12 31 31 H 1.09009 * 109.46746 * 56.87830 * 20 10 9 32 32 H 1.08997 * 109.46966 * 176.87720 * 20 10 9 33 33 H 1.00904 * 111.00381 * 184.53601 * 21 20 10 34 34 H 1.00905 * 111.00021 * 308.48975 * 21 20 10 35 35 H 1.07997 * 126.50007 * 180.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 -0.0005 5 6 4.2918 0.0120 -0.0016 6 6 3.6145 -1.2028 -0.0027 7 7 4.0250 -2.5170 -0.0034 8 1 4.9490 -2.8122 -0.0029 9 6 2.9355 -3.3447 -0.0038 10 6 2.9930 -4.8506 -0.0052 11 1 2.0762 -5.2489 -0.4400 12 6 3.1357 -5.3492 1.4098 13 1 3.2687 -4.6464 2.2190 14 6 3.0965 -6.7023 1.6712 15 7 2.7525 -7.5457 0.7225 16 14 3.5319 -7.3378 3.3730 17 1 2.3061 -7.3929 4.2094 18 1 4.1148 -8.6988 3.2589 19 1 4.5208 -6.4270 4.0035 20 6 4.1934 -5.3144 -0.8328 21 7 4.0180 -4.8923 -2.2289 22 6 1.8076 -2.6167 -0.0040 23 6 2.2075 -1.2074 -0.0005 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8896 -0.5145 27 1 1.6503 2.1161 0.0005 28 1 4.1084 2.1344 0.0043 29 1 5.3717 0.0302 -0.0024 30 1 2.7246 -8.4976 0.9065 31 1 5.1047 -4.8713 -0.4310 32 1 4.2674 -6.4009 -0.7882 33 1 4.7609 -5.2497 -2.8108 34 1 3.1154 -5.1740 -2.5812 35 1 0.7971 -2.9978 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:24 Heat of formation + Delta-G solvation = 19.528654 kcal Electronic energy + Delta-G solvation = -17174.067864 eV Core-core repulsion = 14556.546300 eV Total energy + Delta-G solvation = -2617.521564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03679 -38.40912 -36.46607 -34.24286 -33.78856 -31.42830 -30.69388 -28.84297 -27.19966 -25.90124 -23.43704 -22.59661 -21.38110 -20.78972 -18.64245 -18.11594 -16.86679 -16.70199 -16.30392 -15.69601 -15.36870 -15.20942 -14.72524 -14.61976 -14.14211 -14.08732 -13.90750 -13.59691 -13.18825 -12.97958 -12.90902 -12.55520 -12.27909 -12.06325 -11.99435 -11.71873 -11.51278 -11.37325 -10.60031 -10.25435 -9.44236 -8.85023 -8.37742 -8.15846 -6.34177 0.39992 0.90576 1.37556 1.39965 1.49482 2.07819 2.40177 2.48112 3.05947 3.12033 3.91302 3.96690 4.16981 4.25257 4.45536 4.52666 4.55158 4.64685 4.80130 4.87085 4.91087 4.95725 5.06229 5.20911 5.26801 5.35968 5.42199 5.53391 5.70392 5.74018 5.89252 6.02591 6.10865 6.23687 6.38807 6.51293 6.64720 6.79539 6.90579 7.33880 8.82740 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.006409 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.272677 B = 4367.860157 C = 4609.983844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.064 4.064 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.145 4.145 6 C 0.070 3.930 7 N -0.578 5.578 8 H 0.413 0.587 9 C 0.152 3.848 10 C 0.104 3.896 11 H 0.026 0.974 12 C -0.531 4.531 13 H 0.047 0.953 14 C 0.027 3.973 15 N -0.909 5.909 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.271 1.271 20 C 0.083 3.917 21 N -0.847 5.847 22 C -0.262 4.262 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.024 0.976 33 H 0.339 0.661 34 H 0.336 0.664 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 12.432 -2.746 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.176 4.176 4 C -0.125 4.125 5 C -0.166 4.166 6 C -0.037 4.037 7 N -0.179 5.179 8 H 0.251 0.749 9 C 0.042 3.958 10 C 0.085 3.915 11 H 0.044 0.956 12 C -0.570 4.570 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.203 1.203 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.048 4.048 21 N -0.376 5.376 22 C -0.287 4.287 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.150 0.850 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.526 12.910 -2.497 13.238 hybrid contribution 0.456 -2.229 0.646 2.365 sum 1.982 10.681 -1.851 11.020 Atomic orbital electron populations 1.20721 0.90263 1.02904 1.02418 1.19403 0.96776 0.91120 0.99199 1.20772 0.94533 0.97268 1.05020 1.21062 0.94113 0.97364 0.99924 1.20284 0.99923 0.89236 1.07169 1.18660 0.94207 0.85640 1.05188 1.41667 1.08362 1.03557 1.64344 0.74942 1.20668 0.85865 0.93321 0.95931 1.17480 0.95110 0.83807 0.95135 0.95606 1.21147 1.51371 0.91924 0.92554 0.93497 1.25613 0.94232 0.96960 1.00524 1.70030 1.46843 1.03153 1.34718 0.85653 0.78645 0.77711 0.80303 1.20267 1.20320 1.19543 1.21612 0.97934 0.97578 0.87699 1.58916 1.07525 1.67720 1.03415 1.21317 0.97350 0.91205 1.18785 1.19325 0.92713 0.93424 1.07246 0.91075 0.89532 0.92709 0.83673 0.82912 0.84955 0.92532 0.93469 0.95785 0.84950 0.85208 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.95 71.24 0.71 -2.10 16 2 C -0.06 -2.09 5.87 -19.91 -0.12 -2.20 16 3 C -0.16 -4.20 9.62 22.03 0.21 -3.99 16 4 C -0.11 -2.72 10.01 22.30 0.22 -2.50 16 5 C -0.15 -4.41 10.08 22.37 0.23 -4.19 16 6 C 0.07 2.66 7.28 39.03 0.28 2.94 16 7 N -0.58 -23.03 5.84 -175.91 -1.03 -24.06 16 8 H 0.41 15.07 7.94 -92.71 -0.74 14.34 16 9 C 0.15 6.85 5.43 40.87 0.22 7.07 16 10 C 0.10 5.11 2.10 -12.28 -0.03 5.08 16 11 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 12 C -0.53 -28.57 8.47 25.60 0.22 -28.35 16 13 H 0.05 2.59 7.76 -2.91 -0.02 2.57 16 14 C 0.03 1.45 5.18 84.65 0.44 1.89 16 15 N -0.91 -49.97 12.15 21.45 0.26 -49.71 16 16 Si 0.95 42.38 29.55 68.60 2.03 44.41 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.08 3.63 5.87 86.30 0.51 4.14 16 21 N -0.85 -31.17 9.32 -186.72 -1.74 -32.91 16 22 C -0.26 -11.61 10.64 23.51 0.25 -11.36 16 23 C -0.12 -4.83 6.14 -20.20 -0.12 -4.96 16 24 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 26 H 0.05 1.55 7.90 -2.39 -0.02 1.53 16 27 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.05 2.00 7.18 -2.38 -0.02 1.98 16 32 H 0.02 1.18 6.83 -2.39 -0.02 1.16 16 33 H 0.34 10.57 9.08 -89.69 -0.81 9.75 16 34 H 0.34 12.46 8.93 -89.69 -0.80 11.66 16 35 H 0.13 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -60.68 295.30 1.31 -59.36 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -1.23 Total: 41.41 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 3.02 Total: -38.51 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -2.51 Total: -106.68 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.68 1.31 -59.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.891 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds